Csa4G083560 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G083560
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	WD-repeat protein, putative; contains IPR011047 (Quinonprotein alcohol dehydrogenase-like superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain)
Location	Chr4 : 5643195 .. 5644820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCATAACCATTAAAACTTGCAGCTTCTTGCTTTATCAAATTCTTCACTTTCATACCTTTCACATGACCATGCCATCTTCTCCACAAGAAGTTGTCCTTGCCAGCTCTCCTGATGGACCCATTGTTGCCTATGATGCCTCCACAGGCACCCATCTGGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATTACCCGAGCCGGGAAAAGTTTCATAGCTGTTTCCCACATTTGCCCAGTCACTGCTTCGGGCTCGATCCATATTTACAATTGGTGGACTTCATCTGCCTTCCAATGCCTAACTGTCCCTGAACCCGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATATTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAAAAGCCGGTATCTTGCCTTAAACTTAGTGCCGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCACAATCGTTGTCATGCCAATCTTTCAACTTGTACAAGCCAAACCACGAGAAAATGCAACCGAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTAACTTCCATTTACTCGGGCATGGGGATATCCAGTACCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAACTTTGGAACTTGCTCTCAGGAACCATCTTGCACACCGTGGTATTCCCTTGTGCCATTTTCAGTGTGGTCTTAGAACCATCAGAGACAGAATTTTTCGCTGCAGGATCTGATGGCTTGGTGTACAAGGGATCGTTGGGACATAACAACAAACGCCGTAGGGGCACAGACTATGAACTAATTCCACAAATCTCCAATGACTTAGTGTATAGGCGCTCATTGAGGCATAAAAACAAACACCTAACAGGCACGAGCTCTGAACTAATTCCATGGTCGACAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTAAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTTGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATGGCCACAGAAAGAAGCCATGGTAAAGAACAGTGTGTCAAAACAGACAGCCATGGAGGAGCAATGGAAATCAGTGAAAGGTTTAGATTACCCATTAAAATGTTGGGGTTGTCAATAAAACAAACAGTTGAAATGCAAGGCGAGGTGGGGGCGGCCGGAAGCGACGTGAGTAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAGGCAAGCTACAATCAAAGAGAAGAAACACAGGGATAGTGATAATATAAGGTCATGCAAATCCATTCCCCCAACATCTAATTTTGCAAATTTTTACTTCCATGGATCAATACTATTCATAATTAAACATAAATCGACCATATTTACAATTTAGAGTCAAATCAATATCACTCAACTTCTGACGTTGATCCCCTCAACTGATAGTATAATATAATGTCATTTGAATGTAATTCGCTCGCTTATGAAATAATTAATGTTATTAATATCTCCGA

mRNA sequence

ATGACCATGCCATCTTCTCCACAAGAAGTTGTCCTTGCCAGCTCTCCTGATGGACCCATTGTTGCCTATGATGCCTCCACAGGCACCCATCTGGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATTACCCGAGCCGGGAAAAGTTTCATAGCTGTTTCCCACATTTGCCCAGTCACTGCTTCGGGCTCGATCCATATTTACAATTGGTGGACTTCATCTGCCTTCCAATGCCTAACTGTCCCTGAACCCGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATATTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAAAAGCCGGTATCTTGCCTTAAACTTAGTGCCGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCACAATCGTTGTCATGCCAATCTTTCAACTTGTACAAGCCAAACCACGAGAAAATGCAACCGAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTAACTTCCATTTACTCGGGCATGGGGATATCCAGTACCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAACTTTGGAACTTGCTCTCAGGAACCATCTTGCACACCGTGGTATTCCCTTGTGCCATTTTCAGTGTGGTCTTAGAACCATCAGAGACAGAATTTTTCGCTGCAGGATCTGATGGCTTGGTGTACAAGGGATCGTTGGGACATAACAACAAACGCCGTAGGGGCACAGACTATGAACTAATTCCACAAATCTCCAATGACTTAGTGTATAGGCGCTCATTGAGGCATAAAAACAAACACCTAACAGGCACGAGCTCTGAACTAATTCCATGGTCGACAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTAAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTTGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATGGCCACAGAAAGAAGCCATGGTAAAGAACAGTGTGTCAAAACAGACAGCCATGGAGGAGCAATGGAAATCAGTGAAAGGTTTAGATTACCCATTAAAATGTTGGGGTTGTCAATAAAACAAACAGTTGAAATGCAAGGCGAGGTGGGGGCGGCCGGAAGCGACGTGAGTAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAGGCAAGCTACAATCAAAGAGAAGAAACACAGGGATAG

Coding sequence (CDS)

ATGACCATGCCATCTTCTCCACAAGAAGTTGTCCTTGCCAGCTCTCCTGATGGACCCATTGTTGCCTATGATGCCTCCACAGGCACCCATCTGGCCAGCTTCAACAGTAGCCGTTCGCCTCGCCGTGGCATTACCCGAGCCGGGAAAAGTTTCATAGCTGTTTCCCACATTTGCCCAGTCACTGCTTCGGGCTCGATCCATATTTACAATTGGTGGACTTCATCTGCCTTCCAATGCCTAACTGTCCCTGAACCCGTTGCCCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTACATCCATATTCTCTCTCTTCCATCAGGGGATGTTCTCAACTCTCTACCTGCACACAAAAAGCCGGTATCTTGCCTTAAACTTAGTGCCGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCACAATCGTTGTCATGCCAATCTTTCAACTTGTACAAGCCAAACCACGAGAAAATGCAACCGAACACATTCTGCATCAGTTTTTAGCACATACTGATTCAGTAACTTCCATTTACTCGGGCATGGGGATATCCAGTACCCAAATAGTCTCCTGCTCATTGGATGGCAGATGCAAACTTTGGAACTTGCTCTCAGGAACCATCTTGCACACCGTGGTATTCCCTTGTGCCATTTTCAGTGTGGTCTTAGAACCATCAGAGACAGAATTTTTCGCTGCAGGATCTGATGGCTTGGTGTACAAGGGATCGTTGGGACATAACAACAAACGCCGTAGGGGCACAGACTATGAACTAATTCCACAAATCTCCAATGACTTAGTGTATAGGCGCTCATTGAGGCATAAAAACAAACACCTAACAGGCACGAGCTCTGAACTAATTCCATGGTCGACAAAGCACGAGGCTGCAGTTGTTTCTATAGTCATAGTAAACGAAGGAAAGCACTTAATATCTGCAGCAGAAGATGGGAGCATCTGGGTCTGGGAAGTGAAGAAAGGGCAGGTCATAATGGCCCTTGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATGGCCACAGAAAGAAGCCATGGTAAAGAACAGTGTGTCAAAACAGACAGCCATGGAGGAGCAATGGAAATCAGTGAAAGGTTTAGATTACCCATTAAAATGTTGGGGTTGTCAATAAAACAAACAGTTGAAATGCAAGGCGAGGTGGGGGCGGCCGGAAGCGACGTGAGTAGAGCCATTGAGATGCTGGAATCTGCCATTGCTGTGTATGAGAAGATGTTGGAATTAATCCTCAAGGAAGCCAAGGCAAGCTACAATCAAAGAGAAGAAACACAGGGATAG

Protein sequence

MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQCVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYEKMLELILKEAKASYNQREETQG*

Homology

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BLAST of Csa4G083560 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-37
Identity = 104/335 (31.04%), Postives = 152/335 (45.37%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G+ F+A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVS 129
           +W    A       EP+  L A  +G YL  GG+SG I++  + +G +L     H + V+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSIYSGMG 189
           CL  S D SLL+SG  DG+I V  + +L     R+       H F  HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 ISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGLVYKGS 249
             +  I+S S D  CK+W+L  G +L  ++FP  I ++ L+P    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVVSIVIV 309
           +  N     GT                        + G+ SE          A+  +   
Sbjct: 245 I--NATSEYGT-----------------------QVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGS 345
            +G  LIS +EDG + VW+ K  + +  L +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

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BLAST of Csa4G083560 vs. Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-25
Identity = 87/338 (25.74%), Postives = 156/338 (46.15%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPI---VAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVT 64
           ++P EVV+ +    P+   + ++  +G +L ++   ++  RG+      ++  +      
Sbjct: 2   AAPMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ----- 61

Query: 65  ASGSIHIYNWWTSSAFQC---LTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVL 124
             G  +I  W      Q    +  P PV  LT  P+G Y+ AG ++  I++  + +G++L
Sbjct: 62  -QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLL 121

Query: 125 NSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKP-RENATEHILHQFLAH 184
             L  H + VSCLK + DGS  +S G D  ++   +  ++QA P R  A  H+  Q   H
Sbjct: 122 VILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPRHVWSQ---H 181

Query: 185 TDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFF 244
           T  +T ++ G G    ++ + SLD   KLW + SG +L +V+F   I SV ++ +E   F
Sbjct: 182 TLPITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIF 241

Query: 245 AAGSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWST 304
             GSDG +++  L     R    +    P+ +   V++    H+N+              
Sbjct: 242 CGGSDGSIFQVDL---CSRPGPREQSFQPEQNTGKVFK---GHRNQ-------------- 301

Query: 305 KHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
                V  + +  +G  L+S + D S+ +W+VK  Q +
Sbjct: 302 -----VTCLSVSTDGSILLSGSHDESVRLWDVKSKQCV 304

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BLAST of Csa4G083560 vs. Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-24
Identity = 83/338 (24.56%), Postives = 156/338 (46.15%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPI---VAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVT 64
           ++P EV + +    P+   + ++  +G +L ++   ++  RG+      ++  + +    
Sbjct: 2   AAPMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL---- 61

Query: 65  ASGSIHIYNWWTSSAFQC---LTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVL 124
             G  +I  W      Q    +  P PV  LTA+P+G Y+ AG ++  IH+  + +G++L
Sbjct: 62  --GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLL 121

Query: 125 NSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKP-RENATEHILHQFLAH 184
             L  H + VSCL+ + D S  ISGG D  ++V  +  ++QA P R  A  H+      H
Sbjct: 122 VILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPRHVWSH---H 181

Query: 185 TDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFF 244
              +T ++ G G    ++ + SLD   KLW + SG +L +V+F  +I +V ++ +E   F
Sbjct: 182 ALPITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMF 241

Query: 245 AAGSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWST 304
             GS+G +++                       DL      R ++ H    + ++     
Sbjct: 242 CGGSEGSIFQ----------------------VDLFTWPGQRERSFHPEQDAGKVF---K 301

Query: 305 KHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
            H   V  + +  +G  L+S + D ++ +W+V+  Q I
Sbjct: 302 GHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCI 304

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BLAST of Csa4G083560 vs. Swiss-Prot
Match: WDR18_MOUSE (WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-24
Identity = 87/338 (25.74%), Postives = 155/338 (45.86%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPI---VAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVT 64
           ++P EVV+ +     +   V ++  +G +L ++   ++  RG+      ++  +      
Sbjct: 2   AAPMEVVVCTDAAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ----- 61

Query: 65  ASGSIHIYNWWTSSAFQC---LTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVL 124
             G  +I  W      Q    +  P PV  LT  P+G Y+ AG ++  I++  + +G++L
Sbjct: 62  -QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLL 121

Query: 125 NSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKP-RENATEHILHQFLAH 184
             L  H + VSCLK + DGS  +S G D   +   +  ++QA P R  A  H+  Q   H
Sbjct: 122 VILSRHYQDVSCLKFTGDGSHFVSAGKDCLALAWSLCSVLQADPSRILAPRHVWSQ---H 181

Query: 185 TDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFF 244
           T  +T ++ G G    ++ + SLD   KLW + SG +L +V+F   I SV ++ +E   F
Sbjct: 182 TLPITDLHCGFGGPMARVATASLDQTVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIF 241

Query: 245 AAGSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWST 304
             GSDG +++  L      R   ++   P+ +   V++    H+N+              
Sbjct: 242 CGGSDGSIFQVDLCSWPGLR---EHSFQPEQNTGKVFK---GHRNQ-------------- 301

Query: 305 KHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVI 336
                V  + +  +G  L+S + D S+ +W+VK  Q +
Sbjct: 302 -----VTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCL 304

[Close]

BLAST of Csa4G083560 vs. Swiss-Prot
Match: WDR18_DANRE (WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.2e-24
Identity = 92/350 (26.29%), Postives = 158/350 (45.14%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPI---VAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVT 64
           S+P EVVL++   G +     YD  TG+   S+    +  R +T     +I  + +    
Sbjct: 2   SAPVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL---- 61

Query: 65  ASGSIHIYNWWTSSAFQC---LTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVL 124
             G  +I  W      Q    +  P  V  L A+PDG Y+ AG ++  I++  + +G++L
Sbjct: 62  --GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLL 121

Query: 125 NSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQA-KPRENATEHILHQFLAH 184
             L  H + +SC+K + D S  +SGG D    +  +  +VQ    R     HIL +   H
Sbjct: 122 AILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQLDSSRTPEPRHILSR---H 181

Query: 185 TDSVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFF 244
           +  +T I+ G+     ++ + SLD   K+W + SG +L +V+F   I SV  +P E   F
Sbjct: 182 SLPITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLF 241

Query: 245 AAGSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWST 304
             GSDG +++ SL   +             +S D  + +S    N+   G          
Sbjct: 242 CGGSDGNIFQVSLCSTS-------------LSRDKTF-QSDSEGNQVFKG---------- 301

Query: 305 KHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISD 348
            H   V  + +  +G  L+S + D ++ +W+V+  Q I  + N  G +++
Sbjct: 302 -HRNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTI-NHRGPVTN 315

[Close]

BLAST of Csa4G083560 vs. TrEMBL
Match: A0A0A0L0D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1)

HSP 1 Score: 877.9 bits (2267), Expect = 5.3e-252
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 1


Query: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120
           TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240
           VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300
           SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420
           CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQG 443
           KMLELILKEAKASYNQREETQG
Sbjct: 421 KMLELILKEAKASYNQREETQG 442

[Close]

BLAST of Csa4G083560 vs. TrEMBL
Match: W9R444_9ROSA (WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 3.0e-114
Identity = 228/439 (51.94%), Postives = 297/439 (67.65%), Query Frame = 1


Query: 3   MPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M SSP EV+L SSP+GPI+AYDAS+G  +  F  SRSPRRG+   GK FIA SHI PVTA
Sbjct: 1   MSSSPHEVILTSSPEGPIIAYDASSGASVTCFTGSRSPRRGLALVGKIFIAASHISPVTA 60

Query: 63  SGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLP 122
           SGSIHIYNWW+S+AF  L VPEPVAPL  TPDG YLFAGGLSG ++ LS+PSGDVL S+ 
Sbjct: 61  SGSIHIYNWWSSTAFHKLPVPEPVAPLIGTPDGSYLFAGGLSGSVYALSVPSGDVLRSVH 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVT 182
           AHKK VSCL++S DGSLLISG DDGTIVV+PIFQLV +   ++  + I+H+  AH+ +VT
Sbjct: 121 AHKKSVSCLRISEDGSLLISGSDDGTIVVIPIFQLVGSSINQDMDQLIMHKLAAHSGAVT 180

Query: 183 SIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSD 242
            I SG  + ++QI+SCSLD  CK W+LL GT L TVVFP  I  +VL PSE+EF+AAGSD
Sbjct: 181 DIISGKELCNSQIISCSLDCTCKFWSLLRGTHLRTVVFPSTILGLVLNPSESEFYAAGSD 240

Query: 243 GLVYKGSLGHNNKR---RRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKH 302
           G VYKGS+   ++R    +G D+EL+                              +  H
Sbjct: 241 GSVYKGSIKVGSRRIPSSKGQDHELV-----------------------------IAQNH 300

Query: 303 EAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMG-SISDLVMATERSHGK 362
             A+VS+ +VN G++L+SA+EDG +++ ++  GQV++AL NE G SISDLV+AT    GK
Sbjct: 301 NGAIVSLAMVNSGRNLVSASEDGGVYIQKIDDGQVVLALGNEFGSSISDLVVATGIGCGK 360

Query: 363 E----QCVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLES 422
           +    +    +  G  + +S R    + M    +K+ VEM+  +  A  D SRAI++LES
Sbjct: 361 DIVGSRLGSGEFDGVRIGLSGR---QVMMSSSPVKERVEMEDVLALAEKDRSRAIDLLES 407

Query: 423 AIAVYEKMLELILKEAKAS 434
           AIA+YE++LELILKEAK +
Sbjct: 421 AIAMYERLLELILKEAKGT 407

[Close]

BLAST of Csa4G083560 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 3.0e-114
Identity = 214/350 (61.14%), Postives = 254/350 (72.57%), Query Frame = 1


Query: 3   MPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M SSP E+VL SSPDGPI+AYDAS+G  LA F  SRSPRRG+   GKS+IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF  L VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVT 182
           AH KPVSCL +S D SLLISG DDGTIVV+PIFQLV A   ++  E ILH+F AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSD 242
           +I SGMG+ ++QI+SCSLD  CK W+LL GT+L T+VFPC I  V L P++ EF+ AGSD
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAA 302
           G V+KG                            SL+  ++ L    SELI W+ KH  A
Sbjct: 241 GSVHKG----------------------------SLKVGSRQLVTQGSELIAWTPKHGGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMAT 353
           VVS+V+VN G++LISA+EDGS+WVWEV  GQVIMAL NEMGSISDLV AT
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAAT 322

[Close]

BLAST of Csa4G083560 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.4e-02
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1


Query: 401 AGSDVSRAIEMLESAIAVYEKMLELILKEAK 432
           A +D +RAI+MLESAIA+YE++LELILKEAK
Sbjct: 336 AANDRNRAIDMLESAIAMYERLLELILKEAK 366

HSP 2 Score: 412.9 bits (1060), Expect = 4.9e-112
Identity = 224/445 (50.34%), Postives = 286/445 (64.27%), Query Frame = 1


Query: 3   MPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M  S  E+VL SSPDGPI AYD  +GT LA F  SRSPR G+   GK++IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLP 122
           SGSIH+Y WW+SSA   L +PEPVAPL ATPDG YLFAGGL G ++ LS+PSG++L S P
Sbjct: 61  SGSIHLYTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVT 182
           AH KPVSC+ +S+D SLLISGGDDG IVV+PIFQLV+A   EN +  ILH F AH   VT
Sbjct: 121 AHSKPVSCINISSDSSLLISGGDDGNIVVVPIFQLVEAPGSENESNLILHSFPAHDGPVT 180

Query: 183 SIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSD 242
            I   MGI    IVSCS D  CKLW+LL G  L TV FPC+I  + L+P+E EF+AAGS+
Sbjct: 181 GITVCMGICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSN 240

Query: 243 GLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAA 302
           GL+YKGSL   +  R+G                               +LI W+ KH+ A
Sbjct: 241 GLIYKGSLQAGS--RKG--------------------------IAQGRKLITWTQKHDGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQCV 362
           VVS+V++NEGK+L+SAAEDGS+++W ++ GQ+IM + N M +ISD+V+A     G+E   
Sbjct: 301 VVSVVVINEGKNLVSAAEDGSVFIWGIENGQLIMVIGNNMDNISDVVVARGICDGRE--- 360

Query: 363 KTDSHGGAMEISERFRLPIKMLGLS--------IKQTVEMQGEVGAAGSDVSRAIEMLES 422
               +G  +  +E      + LGLS        IK TV ++  +  A  +  +AI+ LES
Sbjct: 361 ---GYGNRVG-NEMNEFGGRNLGLSSKELNFRPIKDTVNVENALAVAAKNSRKAIDKLES 410

Query: 423 AIAVYEKMLELILKEAKASYNQREE 440
           AI VYE++LELILKEAKA  ++  E
Sbjct: 421 AIGVYERLLELILKEAKAGTSKNGE 410

[Close]

BLAST of Csa4G083560 vs. TrEMBL
Match: U5GSX8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39280g PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.1e-111
Identity = 225/442 (50.90%), Postives = 294/442 (66.52%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASG 64
           SS +E+VL SSPDGPI AYD  +GT LA F+ SRSPR G+  AGK++IA SHI   TASG
Sbjct: 2   SSSREIVLTSSPDGPITAYDIFSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATASG 61

Query: 65  SIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAH 124
           SIH+YNWW+S+AF  L VPEPVAPL ATPDG +LFAGG+SG I+ LS+PSG++L S PAH
Sbjct: 62  SIHLYNWWSSTAFHHLPVPEPVAPLAATPDGSFLFAGGVSGNIYALSIPSGNILKSFPAH 121

Query: 125 KKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSI 184
            KPVSCL +S DGSLLISGGDDGTI+V+PIFQLV+     N  + +LH F+AH   VT+I
Sbjct: 122 TKPVSCLTISNDGSLLISGGDDGTILVVPIFQLVEQTTDGNCKDLMLHSFVAHDGPVTAI 181

Query: 185 YSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGL 244
            + +G     ++SCS D  CKLW+LL GT L  + FPCAI  + L+P+ TEF+AAG+DGL
Sbjct: 182 -TCIGFCHYTVISCSTDCTCKLWSLLDGTNLRRITFPCAISRIALDPTGTEFYAAGADGL 241

Query: 245 VYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVV 304
           +YKG L      + G+  ++ P +                      EL   + KH  A++
Sbjct: 242 IYKGFL------KVGSRKQVSPML----------------------ELAILADKHGGAII 301

Query: 305 SIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQCVK- 364
           S+V++N GK+L+SAAEDG +++WEV++GQVIM L N M SISDLV+A+     + Q V+ 
Sbjct: 302 SVVMMNAGKNLVSAAEDGRVYLWEVERGQVIMVLGNNMESISDLVVASGICDARRQGVRV 361

Query: 365 ----TDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVY 424
                 S GG + +S       K    S+K TVE++  +  A  D S+ I+MLESAI VY
Sbjct: 362 GENMNKSVGGGIVLSG------KEFTRSVKDTVEIEDVLSVAAKDRSKTIDMLESAIGVY 408

Query: 425 EKMLELILKEAK--ASYNQREE 440
           E++LELILKEAK   S N  E+
Sbjct: 422 ERLLELILKEAKGGTSRNSHED 408

[Close]

BLAST of Csa4G083560 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-38
Identity = 104/335 (31.04%), Postives = 152/335 (45.37%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G+ F+A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVS 129
           +W    A       EP+  L A  +G YL  GG+SG I++  + +G +L     H + V+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSIYSGMG 189
           CL  S D SLL+SG  DG+I V  + +L     R+       H F  HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 ISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGLVYKGS 249
             +  I+S S D  CK+W+L  G +L  ++FP  I ++ L+P    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVVSIVIV 309
           +  N     GT                        + G+ SE          A+  +   
Sbjct: 245 I--NATSEYGT-----------------------QVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGS 345
            +G  LIS +EDG + VW+ K  + +  L +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of Csa4G083560 vs. TAIR10
Match: AT1G58230.1 (AT1G58230.1 binding)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-08
Identity = 37/140 (26.43%), Postives = 61/140 (43.57%), Query Frame = 1


Query: 94   DGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGDDGTIVVMP 153
            + F +  G      H++SL  G V+ S+  HK  VSC+ ++AD ++L +G  D T++V  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQLVQAKPR-ENATEHIL-----------HQFLAHTDSVTSIYSGMGISSTQIVSCSLD 213
            I ++   + R  N    +L           H    H D +T +Y    +    ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDI--VISGSKD 2458

Query: 214  GRCKLWNLLSGTILHTVVFP 222
            G C    L  G  + ++  P
Sbjct: 2459 GTCVFHTLREGRYIRSLKHP 2476

HSP 2 Score: 33.5 bits (75), Expect = 4.1e-01
Identity = 34/110 (30.91%), Postives = 50/110 (45.45%), Query Frame = 1


Query: 86   VAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISGGD 145
            V+ L A+  G  +  G     +H+ S+ +G  L S  ++ + ++CL+LS  G  L+S GD
Sbjct: 2481 VSKLAASHHGRIVLYGDDDLSLHLYSI-NGKHLASSESNGR-INCLELSKCGEFLVSAGD 2540

Query: 146  DGTIVVMPIFQLVQAKPRENATEHILHQ--------FLAHT-DSVTSIYS 187
             G I+V  +  L   K R N    I+          FLA T D    +YS
Sbjct: 2541 QGQIIVRSMNTLEVVK-RYNGAGKIITSLTVTQEECFLAGTKDGALLVYS 2587

[Close]

BLAST of Csa4G083560 vs. TAIR10
Match: AT1G73720.1 (AT1G73720.1 transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 52.8 bits (125), Expect = 6.5e-07
Identity = 42/148 (28.38%), Postives = 63/148 (42.57%), Query Frame = 1


Query: 92  TPDGFYLFAGGLSGYIHILSLPSGDVLNSLP--------AHKKPVSCLKLSADGSLLISG 151
           +PDG +L +  + G+I +    SG +   L          H  PV C+  S D  +L SG
Sbjct: 222 SPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASG 281

Query: 152 GDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSIYSGMGISSTQIVSCSLDGR 211
             DG I +  I            T   + +F AH+  VTS+        +Q++S S D  
Sbjct: 282 SQDGKIKIWRI-----------RTGVCIRRFDAHSQGVTSL--SFSRDGSQLLSTSFDQT 341

Query: 212 CKLWNLLSGTIL-----HTVVFPCAIFS 227
            ++  L SG +L     HT     AIF+
Sbjct: 342 ARIHGLKSGKLLKEFRGHTSYVNHAIFT 356

HSP 2 Score: 43.1 bits (100), Expect = 5.1e-04
Identity = 42/160 (26.25%), Postives = 67/160 (41.88%), Query Frame = 1


Query: 84  EPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKPVSCLKLSADGSLLISG 143
           +PV  +  + D   L +G   G I I  + +G  +    AH + V+ L  S DGS L+S 
Sbjct: 264 DPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLST 323

Query: 144 GDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVT-SIYSGMGISSTQIVSCSLDG 203
             D T           A+     +  +L +F  HT  V  +I++  G   ++I++ S D 
Sbjct: 324 SFDQT-----------ARIHGLKSGKLLKEFRGHTSYVNHAIFTSDG---SRIITASSDC 383

Query: 204 RCKLWNLLSGTILHTVVFP-------CAIFSVVLEPSETE 236
             K+W+  +   L T   P        ++ S+ L P  TE
Sbjct: 384 TVKVWDSKTTDCLQTFKPPPPLRGTDASVNSIHLFPKNTE 409

[Close]

BLAST of Csa4G083560 vs. NCBI nr
Match: gi|778697541|ref|XP_011654344.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus])

HSP 1 Score: 877.9 bits (2267), Expect = 7.7e-252
Identity = 442/442 (100.00%), Postives = 442/442 (100.00%), Query Frame = 1


Query: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120
           TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240
           VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300
           SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420
           CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQG 443
           KMLELILKEAKASYNQREETQG
Sbjct: 421 KMLELILKEAKASYNQREETQG 442

[Close]

BLAST of Csa4G083560 vs. NCBI nr
Match: gi|659101671|ref|XP_008451730.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo])

HSP 1 Score: 827.4 bits (2136), Expect = 1.2e-236
Identity = 415/441 (94.10%), Postives = 428/441 (97.05%), Query Frame = 1


Query: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60
           MTMPSSPQEVVLASSPDGPIVAYDASTGT LA+FNSSRSPRRGITRAGKSFIAVSHICPV
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120
           TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYL AGGLSGYIHILSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180
           LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240
           VTSIYSGMGISST+IVSCSLD RCK W+LLSGTILHTVVFPCAIFSVVLEPSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300
           SDGLVYKGSL HNNK RRGTDY+LIPQISNDLVY+RSLRHKNKHLTGTSSELIPWS KHE
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360
           AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATER+HGKEQ
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420
           CV+TD HG  ++ISERFRLPIKMLGLSIK+TV+MQGE+ AAGSDV RAIEMLESAIAVYE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKASYNQREETQ 442
           KMLELILKEA+ASYNQREETQ
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Csa4G083560 vs. NCBI nr
Match: gi|645239874|ref|XP_008226336.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume])

HSP 1 Score: 461.5 bits (1186), Expect = 1.7e-126
Identity = 252/442 (57.01%), Postives = 305/442 (69.00%), Query Frame = 1


Query: 3   MPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M SSP E+VL SSPDGPI+AYDAS+G  LA F  SRSPR G+   GKS+IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF  L V EPVAPLTAT DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVT 182
           AH KPVSCL +S D SLLISG DDGTIVV+PIFQLV A   +N  E ILH+F AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT 180

Query: 183 SIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSD 242
           +I SG G+ ++QI+SCSLD  CK W+LL GT+L T+VFPC I  V L P+E EF+ AGSD
Sbjct: 181 AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD 240

Query: 243 GLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAA 302
           G V+KGSL      + GT                      + L    SELI W+ KH  A
Sbjct: 241 GSVHKGSL------KVGT----------------------RQLVTQGSELISWTPKHSGA 300

Query: 303 VVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQCV 362
           VVS+V+VN G++LISA+EDGS+WVWEV  GQVIMAL NEMGSISDLV AT  +     C 
Sbjct: 301 VVSVVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGIN-----CS 360

Query: 363 KTDSHG---GAMEISE-RFRLPIK-MLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIA 422
           K +  G   GA       FR   K ++ + IK+ +EM+  +  A +D +RAI+MLESAIA
Sbjct: 361 KANGFGMRNGAYGSGNCHFRSSGKELMNMPIKKILEMEDALKVAANDRNRAIDMLESAIA 409

Query: 423 VYEKMLELILKEAKASYNQREE 440
           +YE++LELILKEAK      E+
Sbjct: 421 MYERLLELILKEAKRGSRNNEQ 409

[Close]

BLAST of Csa4G083560 vs. NCBI nr
Match: gi|1009162129|ref|XP_015899270.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba])

HSP 1 Score: 433.7 bits (1114), Expect = 3.8e-118
Identity = 227/433 (52.42%), Postives = 296/433 (68.36%), Query Frame = 1


Query: 5   SSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASG 64
           S P E++L SSPDGPI+A+DAS+G  L  F+ SRSPRRG+  AG +FIA SHI P TA G
Sbjct: 4   SFPYEIILTSSPDGPIIAHDASSGATLTHFSDSRSPRRGLAVAGNTFIAASHISPTTACG 63

Query: 65  SIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAH 124
           SIH+YNWW+S+AF  L VPEPVAP+TAT DG  +FAGGLSG ++ LSLPSGD+L SLP+H
Sbjct: 64  SIHLYNWWSSTAFHNLPVPEPVAPITATSDGALIFAGGLSGCVYALSLPSGDILKSLPSH 123

Query: 125 KKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDSVTSI 184
            KPVSCL +S DGSLL+SG DDGTI V+PIFQL+ +   EN+   ++ +F AH+DSVT+I
Sbjct: 124 SKPVSCLGISDDGSLLVSGSDDGTIAVVPIFQLMGSSENENSDYAVMQKFTAHSDSVTAI 183

Query: 185 YSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGL 244
             G G+ ++QI+S SLD  CK W+LL GT L TV F C I  +VL+P+E+EF+AAGSDG 
Sbjct: 184 VFGSGLCTSQIISSSLDFTCKFWSLLRGTQLKTVSFRCGILGIVLDPTESEFYAAGSDGS 243

Query: 245 VYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHEAAVV 304
           VYK S+                               ++ L     EL+ W  KHE  VV
Sbjct: 244 VYKASINAG----------------------------SRELANPGHELVEWKEKHEGPVV 303

Query: 305 SIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGS-ISDLVMATERSHGKEQCVK 364
           S+ +V EG++LI+A+EDGS+WVW+V++G+V++ L N MGS ISD+V+A   S+GK     
Sbjct: 304 SLAMVKEGRNLITASEDGSVWVWDVERGKVVIELGNTMGSMISDMVVAKGISYGKGHGSG 363

Query: 365 TDSHGGAMEI-SERFRLPI----KMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAV 424
             S GG     SE +R+       M+GL +K+T+EM+  +  A  D SRAI+MLESAI +
Sbjct: 364 AGSGGGGSNNGSEEWRIGFCGEELMMGLGMKETMEMEDVLRVAEKDRSRAIDMLESAIGM 408

Query: 425 YEKMLELILKEAK 432
           YEK+LELILKEAK
Sbjct: 424 YEKLLELILKEAK 408

[Close]

BLAST of Csa4G083560 vs. NCBI nr
Match: gi|657978316|ref|XP_008381094.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica])

HSP 1 Score: 431.4 bits (1108), Expect = 1.9e-117
Identity = 237/447 (53.02%), Postives = 293/447 (65.55%), Query Frame = 1


Query: 3   MPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTA 62
           M SS  E+VL SSPDGPI+AYDAS+GT LA F  SRSPRRG+T  GK +IA SH+ P T 
Sbjct: 1   MSSSSHEIVLXSSPDGPIIAYDASSGTALAQFTGSRSPRRGLTIVGKPYIAASHVSPTTG 60

Query: 63  SGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLP 122
           SGSIH+YNW +SSA     VPEPVAPL A  DG YLFAGGLSG +H LS+PSGDVL SL 
Sbjct: 61  SGSIHLYNWCSSSALHNXQVPEPVAPLAAMSDGAYLFAGGLSGSVHTLSIPSGDVLKSLA 120

Query: 123 AHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKP---RENATEHILHQFLAHTD 182
            H K VSCL +S D SLLISG DDG+IVV+PIFQLV A      +N  + +LH+F AH+D
Sbjct: 121 VHNKXVSCLGISDDESLLISGSDDGSIVVVPIFQLVAASGYVLYDNVEDLVLHRFSAHSD 180

Query: 183 SVTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAA 242
           SVT++ SG+G+ ++Q++SCSLDG CK W+LL   +L TVVFPCAI  + L P E EF+AA
Sbjct: 181 SVTAVVSGVGLYTSQVISCSLDGTCKFWSLLXAALLLTVVFPCAIXXIALNPREPEFYAA 240

Query: 243 GSDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKH 302
           GSDG V KG L    KR+                           L     +LI WS KH
Sbjct: 241 GSDGSVXKG-LWRTGKRQ---------------------------LVMQGKDLITWSPKH 300

Query: 303 EAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKE 362
           +  VVS+V+VNEG++L+SA+EDGS+WVW+V  GQV+M L NEMGSISDLV AT  ++ K 
Sbjct: 301 DGGVVSVVMVNEGRNLLSASEDGSVWVWQVDAGQVVMVLANEMGSISDLVAATGTNYSKG 360

Query: 363 QCVKTDSHG---GAMEI----SERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEML 422
                 + G   G+ E      E   +PIKML        +M   +  A  D SRAI+ML
Sbjct: 361 XDFSASNRGYRNGSCEFGLTGKELTSMPIKML--------KMDEMLKVAARDRSRAIDML 411

Query: 423 ESAIAVYEKMLELILKEAKASYNQREE 440
           ESAI +YE++LELILKEAK S +  ++
Sbjct: 421 ESAIGMYERLLELILKEAKKSSSNNKQ 411

The following BLAST results are available for this feature:

BLAST of Csa4G083560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RID3_ARATH	1.9e-37	31.04	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1	[more]
WDR18_RAT	1.7e-25	25.74	WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1	[more]
WDR18_HUMAN	3.2e-24	24.56	WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2	[more]
WDR18_MOUSE	3.2e-24	25.74	WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1	[more]
WDR18_DANRE	4.2e-24	26.29	WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1	[more]

BLAST of Csa4G083560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D5_CUCSA	5.3e-252	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1	[more]
W9R444_9ROSA	3.0e-114	51.94	WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1	[more]
M5WIZ4_PRUPE	3.0e-114	61.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
M5WIZ4_PRUPE	5.4e-02	74.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
U5GSX8_POPTR	1.1e-111	50.90	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39280g PE=4 SV=1	[more]

BLAST of Csa4G083560 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	1.1e-38	31.04	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	1.5e-08	26.43	binding	[more]
AT1G73720.1	6.5e-07	28.38	transducin family protein / WD-40 repeat family protein	[more]

BLAST of Csa4G083560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697541\|ref\|XP_011654344.1\|	7.7e-252	100.00	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus]	[more]
gi\|659101671\|ref\|XP_008451730.1\|	1.2e-236	94.10	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo]	[more]
gi\|645239874\|ref\|XP_008226336.1\|	1.7e-126	57.01	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume]	[more]
gi\|1009162129\|ref\|XP_015899270.1\|	3.8e-118	52.42	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba]	[more]
gi\|657978316\|ref\|XP_008381094.1\|	1.9e-117	53.02	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR011047	Quinoprotein_ADH-like_supfam
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU084940	cucumber EST collection version 3.0	transcribed_cluster
CU149021	cucumber EST collection version 3.0	transcribed_cluster
CU150239	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G083560.1	Csa4G083560.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU084940	CU084940	transcribed_cluster
CU149021	CU149021	transcribed_cluster
CU150239	CU150239	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 171..208 score: 0.039coord: 117..150 score: 6.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 73..111 score: 180.0coord: 289..328 score: 0.01coord: 211..249 score: 330.0coord: 167..208 score: 4.2E-4coord: 114..153 score: 4.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 174..217 score: 8.704coord: 121..151 score: 10.275coord: 296..337 score: 12
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 10..251 score: 2.04E-44coord: 288..341 score: 2.04
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 9..252 score: 3.6E-39coord: 290..351 score: 3.6
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 79..217 score: 13.712coord: 296..337 score: 1
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 315..329 score: -coord: 195..209 scor
None	No IPR available	unknown	Coil	Coil	coord: 409..429 scor
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 278..439 score: 3.0E-154coord: 5..252 score: 3.0E
None	No IPR available	PANTHER	PTHR18763:SF3	SUBFAMILY NOT NAMED	coord: 278..439 score: 3.0E-154coord: 5..252 score: 3.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G083560	Cla002443	Watermelon (97103) v1	cuwmB314
Csa4G083560	MELO3C016114	Melon (DHL92) v3.5.1	cumeB314
Csa4G083560	ClCG07G010110	Watermelon (Charleston Gray)	cuwcgB324
Csa4G083560	Lsi07G002910	Bottle gourd (USVL1VR-Ls)	culsiB305
Csa4G083560	MELO3C016114.2	Melon (DHL92) v3.6.1	cumedB299
Csa4G083560	Cla97C07G136790	Watermelon (97103) v2	cuwmbB321
Csa4G083560	Bhi01G002500	Wax gourd	cuwgoB365
Csa4G083560	CSPI04G08000	Wild cucumber (PI 183967)	cpicuB182
Csa4G083560	Cucsa.273600	Cucumber (Gy14) v1	cgycuB389
Csa4G083560	CmaCh16G004250	Cucurbita maxima (Rimu)	cmacuB337
Csa4G083560	CmoCh16G004570	Cucurbita moschata (Rifu)	cmocuB325
Csa4G083560	Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cpecuB221
Csa4G083560	CsGy4G007870	Cucumber (Gy14) v2	cgybcuB165
Csa4G083560	Carg11356	Silver-seed gourd	carcuB0677

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G083560	Watermelon (97103) v2	cuwmbB282
Csa4G083560	Wax gourd	cuwgoB424
Csa4G083560	Cucurbita maxima (Rimu)	cmacuB480
Csa4G083560	Cucurbita maxima (Rimu)	cmacuB708
Csa4G083560	Cucurbita maxima (Rimu)	cmacuB715
Csa4G083560	Cucurbita moschata (Rifu)	cmocuB468
Csa4G083560	Cucurbita moschata (Rifu)	cmocuB699
Csa4G083560	Cucurbita moschata (Rifu)	cmocuB706
Csa4G083560	Melon (DHL92) v3.5.1	cumeB311
Csa4G083560	Watermelon (Charleston Gray)	cuwcgB282
Csa4G083560	Watermelon (97103) v1	cuwmB353
Csa4G083560	Cucurbita pepo (Zucchini)	cpecuB399
Csa4G083560	Cucurbita pepo (Zucchini)	cpecuB409
Csa4G083560	Cucurbita pepo (Zucchini)	cpecuB570
Csa4G083560	Bottle gourd (USVL1VR-Ls)	culsiB287
Csa4G083560	Cucumber (Gy14) v2	cgybcuB170
Csa4G083560	Melon (DHL92) v3.6.1	cumedB296
Csa4G083560	Silver-seed gourd	carcuB0045
Csa4G083560	Silver-seed gourd	carcuB0046
Csa4G083560	Silver-seed gourd	carcuB0047
Csa4G083560	Silver-seed gourd	carcuB0340