CmaCh16G004250 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	WD repeat-containing protein 18
Location	Cma_Chr16 : 2121975 .. 2123297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCATTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCGATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGATGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACAACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCAAAGCACGACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAAGGAAATACAAAGATGA

mRNA sequence

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCATTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCGATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGATGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACAACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCAAAGCACGACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAAGGAAATACAAAGATGA

Coding sequence (CDS)

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAACGATAGCCATTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCGATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGTTTTTATCTGTTTGCTGGTGGCCTTTCAGGATGCATTCATACGCTCTCTCTTCCATCTGGGGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATATCAGGTGGGGATGATGGCACGATTGTTGTCATCCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATAATGATTCAGTGACTTCCATTTACTCTGTCATGGGGATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACAACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCGCCAAAGCACGACGCTGCAGTTGTATCTATAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGGGGCAGCCATGGAAGAGCAATGAAAAGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCAGGCTACAATCAAAAGGAAATACAAAGATGA

Protein sequence

MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKMLELILKEAKAGYNQKEIQR

Homology

[Close]

BLAST of CmaCh16G004250 vs. Swiss-Prot
Match: RID3_ARATH (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-34
Identity = 100/335 (29.85%), Postives = 153/335 (45.67%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMG 189
           CL  S D SLL+SG  DG+I V  + +L     ++       H F+ H  SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A           
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAG---------- 244

Query: 250 LRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVII 309
                             A D+  Y  ++   +++     ++++    +   A+  +   
Sbjct: 245 ------------------ARDSKIYIGAINATSEY----GTQVLGSVSEKGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of CmaCh16G004250 vs. Swiss-Prot
Match: WDR18_DANRE (WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-22
Identity = 90/351 (25.64%), Postives = 154/351 (43.87%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 65
           +P EVVL++   G +     YD  TG+   S+   ++  R +T      I  + +     
Sbjct: 3   APVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P  V  L A+PDG Y+ AG ++  I+   + +G++L 
Sbjct: 63  -GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLLA 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + +SC++ + D S  +SGG D    +  +  +VQ     + T    H  S H+ 
Sbjct: 123 ILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQL--DSSRTPEPRHILSRHSL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T I+  +    +++ ++S+D   K W + SG +L +V+F   I SV  DP E   F  
Sbjct: 183 PITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG +++ SL       +S D      +  N  ++    H+N                 
Sbjct: 243 GSDGNIFQVSL---CSTSLSRDKTFQSDSEGNQVFK---GHRN----------------- 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVI 351
              V  + +  +G  L+S + D  + +W V   Q I T+ N  G +++  I
Sbjct: 303 --LVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTI-NHRGPVTNAAI 318

[Close]

BLAST of CmaCh16G004250 vs. Swiss-Prot
Match: WDR18_HUMAN (WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-22
Identity = 84/339 (24.78%), Postives = 152/339 (44.84%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +    P+   + ++  +G  L ++    +  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LTA+P+G Y+ AG ++  IH   + +G++L 
Sbjct: 63  -GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + D S  ISGG D  ++V  +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHAL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ +SS+D   K W + SG +L +V+F  +I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GS+G +++  L              T P           R ++ H    + ++      H
Sbjct: 243 GSEGSIFQVDL-------------FTWPGQ---------RERSFHPEQDAGKVFK---GH 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q I T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTV 307

[Close]

BLAST of CmaCh16G004250 vs. Swiss-Prot
Match: WDR18_BOVIN (WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.6e-21
Identity = 82/339 (24.19%), Postives = 147/339 (43.36%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +     +   V ++  +G  L ++    +  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT +P+G Y+ AG +S  I+   + +G++L 
Sbjct: 63  -GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + D S  ISGG D  ++   +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W + SG +L +V+F   I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG +++  L              T P     +++    H  K   G           H
Sbjct: 243 GSDGSIFQVDL-------------CTWPGQREKSFQPEQEH-GKVFRG-----------H 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTV 307

[Close]

BLAST of CmaCh16G004250 vs. Swiss-Prot
Match: WDR18_RAT (WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.6e-21
Identity = 79/339 (23.30%), Postives = 144/339 (42.48%), Query Frame = 1


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 65
           +P EVV+ +    P+   + ++  +G  L ++    +  RG+       +  +       
Sbjct: 3   APMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ------ 62

Query: 66  SGSIHIYNWW---NSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT  P+G Y+ AG ++  I+   + +G++L 
Sbjct: 63  QGKNYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHND 185
            L  H + VSCL+ + DGS  +S G D  ++   +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQADPSRILAPR--HVWSQHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W++ SG +L +V+F   I SV +D +E   F  
Sbjct: 183 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG +++  L                         CS     +               H
Sbjct: 243 GSDGSIFQVDL-------------------------CSRPGPREQSFQPEQNTGKVFKGH 302

Query: 306 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D ++ +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSILLSGSHDESVRLWDVKSKQCVRTV 307

[Close]

BLAST of CmaCh16G004250 vs. TrEMBL
Match: A0A0A0L0D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 4.6e-195
Identity = 356/438 (81.28%), Postives = 386/438 (88.13%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN S SPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPCAIFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSL HN K    TD EL P  S++L YR SLRHKNKHL GTSSELI WS KH+
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+ SE  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQKE 438
           KMLELILKEAKA YNQ+E
Sbjct: 421 KMLELILKEAKASYNQRE 438

[Close]

BLAST of CmaCh16G004250 vs. TrEMBL
Match: M5WIZ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 2.0e-110
Identity = 208/360 (57.78%), Postives = 257/360 (71.39%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  S SPRRG+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ VPEPVAPLT T DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSCL +S D SLLISG DDGTIVV+PIFQLV A   ++  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           +I S MG+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P++ EF+ AGSD
Sbjct: 181 AIVSGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTQPEFYVAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G V+KGSL+   + L++                              SELI+W+PKH  A
Sbjct: 241 GSVHKGSLKVGSRQLVT----------------------------QGSELIAWTPKHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDLV AT     K  +V
Sbjct: 301 VVSMVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANDV 332

[Close]

BLAST of CmaCh16G004250 vs. TrEMBL
Match: B9T1J9_RICCO (WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.1e-108
Identity = 217/438 (49.54%), Postives = 278/438 (63.47%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M FS  E+VL SSPDGPI AYD  +GT LA F  S SPR G+   G++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+Y WW+SSA   + +PEPVAPL ATPDG YLFAGGL G ++ LS+PSG++L S P
Sbjct: 61  SGSIHLYTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSC+ +S+D SLLISGGDDG IVV+PIFQLV+A   EN +  ILH F AH+  VT
Sbjct: 121 AHSKPVSCINISSDSSLLISGGDDGNIVVVPIFQLVEAPGSENESNLILHSFPAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
            I   MG+    IVS S D  CK WSLL G  L TV FPC+I  + LDP+E EF+AAGS+
Sbjct: 181 GITVCMGICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSN 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GL+YKGSL+   +  I+                               +LI+W+ KHD A
Sbjct: 241 GLIYKGSLQAGSRKGIAQ----------------------------GRKLITWTQKHDGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V+INEG NL+SAAEDG++++W +  GQ+IM + N M +ISD+V+A      +E   
Sbjct: 301 VVSVVVINEGKNLVSAAEDGSVFIWGIENGQLIMVIGNNMDNISDVVVARGICDGRE--- 360

Query: 363 RRGSHGRAMKSESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
               +G  + +E +      LGL         I  T  ++ A+A    + R+AI+ LESA
Sbjct: 361 ---GYGNRVGNEMNEFGGRNLGLSSKELNFRPIKDTVNVENALAVAAKNSRKAIDKLESA 404

Query: 423 IAMYEKMLELILKEAKAG 433
           I +YE++LELILKEAKAG
Sbjct: 421 IGVYERLLELILKEAKAG 404

[Close]

BLAST of CmaCh16G004250 vs. TrEMBL
Match: W9R444_9ROSA (WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 4.7e-107
Identity = 222/440 (50.45%), Postives = 288/440 (65.45%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M  SP EV+L SSP+GPI+AYDAS+G  +  F  S SPRRG+   G+  IA SHI P+TA
Sbjct: 1   MSSSPHEVILTSSPEGPIIAYDASSGASVTCFTGSRSPRRGLALVGKIFIAASHISPVTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWW+S+AF  + VPEPVAPL  TPDG YLFAGGLSG ++ LS+PSGDVL S+ 
Sbjct: 61  SGSIHIYNWWSSTAFHKLPVPEPVAPLIGTPDGSYLFAGGLSGSVYALSVPSGDVLRSVH 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH+KSVSCL +S DGSLLISG DDGTIVVIPIFQLV +   ++  + I+H+ +AH+ +VT
Sbjct: 121 AHKKSVSCLRISEDGSLLISGSDDGTIVVIPIFQLVGSSINQDMDQLIMHKLAAHSGAVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
            I S   + +SQI+S S+D  CKFWSLL GT L TVVFP  I  +VL+PSE+EF+AAGSD
Sbjct: 181 DIISGKELCNSQIISCSLDCTCKFWSLLRGTHLRTVVFPSTILGLVLNPSESEFYAAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G VYKGS++   + + S+                          G   EL+  +  H+ A
Sbjct: 241 GSVYKGSIKVGSRRIPSS-------------------------KGQDHELVI-AQNHNGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMG-SISDLVIATEKRHEKE-- 362
           +VS+ ++N G NL+SA+EDG +++ +++ GQV++ L NE G SISDLV+AT     K+  
Sbjct: 301 IVSLAMVNSGRNLVSASEDGGVYIQKIDDGQVVLALGNEFGSSISDLVVATGIGCGKDIV 360

Query: 363 ---------RNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIEL 422
                      VR G  GR +   SS          + +  EM+  +A    D  RAI+L
Sbjct: 361 GSRLGSGEFDGVRIGLSGRQVMMSSSP---------VKERVEMEDVLALAEKDRSRAIDL 405

Query: 423 LESAIAMYEKMLELILKEAK 431
           LESAIAMYE++LELILKEAK
Sbjct: 421 LESAIAMYERLLELILKEAK 405

[Close]

BLAST of CmaCh16G004250 vs. TrEMBL
Match: A0A067KXT8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 8.2e-104
Identity = 212/446 (47.53%), Postives = 277/446 (62.11%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M FS  E+VL SSP GPI  YD  +GT LA F+ S SPR G+  AG++ IA SHI   TA
Sbjct: 1   MSFSSHEIVLTSSPHGPITVYDTVSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNWW+ +A   + VPEPVAPL +TPDG +LFAGGLSG I  LS+PSG+++ S+P
Sbjct: 61  SGSIHLYNWWSPTALHHLPVPEPVAPLASTPDGLFLFAGGLSGDIFALSIPSGNIIKSVP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VS L++S+D SLLISGGDDG IVV+ IFQL+ A   EN +  ILH F AH+  VT
Sbjct: 121 AHHKPVSSLKISSDSSLLISGGDDGVIVVMAIFQLLDASGNENPSDSILHSFVAHDGPVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           +I S   +S   IVS S D  CK WSLL G  LHTV FPC I  + LD    EF+AAGSD
Sbjct: 181 AIRSCTRLSLPAIVSCSSDCTCKLWSLLEGENLHTVAFPCVILGIALDTMGAEFYAAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GL+YKGS +          +E    AS                   S EL  W+ +H  A
Sbjct: 241 GLIYKGSFK----------AESRKEAS------------------RSRELAIWAERHGGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+V++NEG NL+SA EDG++++W++ +GQVIM L N M  ISD+V+A      K    
Sbjct: 301 VVSVVVVNEGKNLVSAGEDGSVYIWEIERGQVIMVLGNNMEGISDVVVA------KGIGE 360

Query: 363 RRGSHGRAMKSESSRLPSPMLGLL--------INQTAEMQGAVAAGGSDVRRAIELLESA 422
            +G +G  + +E +      LGL         I +  +M+  +    +D R+AI++LESA
Sbjct: 361 GKGYYGNGINNEMNEFVGGSLGLSGKELSSRPIKEAMDMEDVLNVAANDRRKAIDMLESA 412

Query: 423 IAMYEKMLELILKEAKAGYNQKEIQR 441
           I +YE++LELILKEAK   ++   +R
Sbjct: 421 IGVYERLLELILKEAKGSTSKNGEKR 412

[Close]

BLAST of CmaCh16G004250 vs. TAIR10
Match: AT3G49180.1 (AT3G49180.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-35
Identity = 100/335 (29.85%), Postives = 153/335 (45.67%), Query Frame = 1


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSIYSVMG 189
           CL  S D SLL+SG  DG+I V  + +L     ++       H F+ H  SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A           
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAG---------- 244

Query: 250 LRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSIVII 309
                             A D+  Y  ++   +++     ++++    +   A+  +   
Sbjct: 245 ------------------ARDSKIYIGAINATSEY----GTQVLGSVSEKGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of CmaCh16G004250 vs. TAIR10
Match: AT1G58230.1 (AT1G58230.1 binding)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-09
Identity = 46/181 (25.41%), Postives = 76/181 (41.99%), Query Frame = 1


Query: 94   DGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGTIVVIP 153
            + F +  G      H +SL  G V+ S+  H+  VSC+ ++AD ++L +G  D T++V  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQL-VQAKPQENATKHIL-----------HQFSAHNDSVTSIYSVMGMSSSQIVSSSMD 213
            I ++    K   N    +L           H    H+D +T +Y  +      ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLY--VSTDLDIVISGSKD 2458

Query: 214  GRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGSLRHNIKHLISTD 263
            G C F +L  G  + ++  P       L  S         D  +       N KHL S++
Sbjct: 2459 GTCVFHTLREGRYIRSLKHPSGSAVSKLAASHHGRIVLYGDDDLSLHLYSINGKHLASSE 2517

[Close]

BLAST of CmaCh16G004250 vs. TAIR10
Match: AT2G43770.1 (AT2G43770.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.2e-06
Identity = 50/247 (20.24%), Postives = 100/247 (40.49%), Query Frame = 1


Query: 11  VLASSPDGPIVAYDASTGTPL------ASFNDSHSPRRGITRAGRSSIAVSHICPITASG 70
           ++++SPD  + A+D  TG  +      +SF +S  P    TR G   I        +  G
Sbjct: 111 IVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCP----TRRGPPLIISG-----SDDG 170

Query: 71  SIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAH 130
           +  +++     A Q+      +  ++ +     +F GG+   +    L  G+   +L  H
Sbjct: 171 TAKLWDMRQRGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGH 230

Query: 131 RKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVTSI 190
           + +++ + LS DGS L++ G D  + V   + +    PQ    K  + +   HN     +
Sbjct: 231 QDTITGMSLSPDGSYLLTNGMDNKLCV---WDMRPYAPQNRCVK--IFEGHQHNFEKNLL 290

Query: 191 YSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVV-FPCAIFSVVLDPSETEFFAAGSDG 250
                   +++ + S D     W   S   ++ +     ++   V  P+E    +  SD 
Sbjct: 291 KCSWSPDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDK 343

[Close]

BLAST of CmaCh16G004250 vs. NCBI nr
Match: gi|659101671|ref|XP_008451730.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo])

HSP 1 Score: 691.4 bits (1783), Expect = 1.0e-195
Identity = 353/438 (80.59%), Postives = 389/438 (88.81%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN S SPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYL AGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPCAIFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHN KH   TD +L P  S++L Y+ SLRHKNKHL GTSSELI WSPKH+
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR   HGR +K SE  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQKE 438
           KMLELILKEA+A YNQ+E
Sbjct: 421 KMLELILKEAEASYNQRE 438

[Close]

BLAST of CmaCh16G004250 vs. NCBI nr
Match: gi|778697541|ref|XP_011654344.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus])

HSP 1 Score: 688.7 bits (1776), Expect = 6.5e-195
Identity = 356/438 (81.28%), Postives = 386/438 (88.13%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGT LASFN S SPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LPAH+K VSCL+LSADGSLLISGGDDGTIVV+PIFQLVQAKP+ENAT+HILHQF AH DS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS+QIVS S+DGRCK W+LLSGT+LHTVVFPCAIFSVVL+PSETEFFAAG
Sbjct: 181 VTSIYSGMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSL HN K    TD EL P  S++L YR SLRHKNKHL GTSSELI WS KH+
Sbjct: 241 SDGLVYKGSLGHNNKRRRGTDYELIPQISNDLVYRRSLRHKNKHLTGTSSELIPWSTKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSIVI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERSHGKEQ 360

Query: 361 NVRRGSHGRAMK-SESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            V+  SHG AM+ SE  RLP  MLGL I QT EMQG V A GSDV RAIE+LESAIA+YE
Sbjct: 361 CVKTDSHGGAMEISERFRLPIKMLGLSIKQTVEMQGEVGAAGSDVSRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQKE 438
           KMLELILKEAKA YNQ+E
Sbjct: 421 KMLELILKEAKASYNQRE 438

[Close]

BLAST of CmaCh16G004250 vs. NCBI nr
Match: gi|645239874|ref|XP_008226336.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume])

HSP 1 Score: 446.8 bits (1148), Expect = 4.3e-122
Identity = 241/440 (54.77%), Postives = 300/440 (68.18%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M  SP E+VL SSPDGPI+AYDAS+G  LA F  S SPR G+   G+S IA SHI P TA
Sbjct: 1   MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGS+H+YNWW+S+AF ++ V EPVAPLTAT DG YLFAGGLSG +H +S+PSGDVL  LP
Sbjct: 61  SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 182
           AH K VSCL +S D SLLISG DDGTIVV+PIFQLV A   +N  + ILH+F+AH+DSVT
Sbjct: 121 AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           +I S  G+ +SQI+S S+D  CKFWSLL GT+L T+VFPC I  V L+P+E EF+ AGSD
Sbjct: 181 AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           G V+KGSL+   + L++                              SELISW+PKH  A
Sbjct: 241 GSVHKGSLKVGTRQLVT----------------------------QGSELISWTPKHSGA 300

Query: 303 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER-- 362
           VVS+V++N G NLISA+EDG++WVW+V+ GQVIM L NEMGSISDLV AT     K    
Sbjct: 301 VVSVVMVNGGRNLISASEDGSVWVWEVDAGQVIMALGNEMGSISDLVAATGINCSKANGF 360

Query: 363 NVRRGSHGRA---MKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAM 422
            +R G++G      +S    L    + + I +  EM+ A+    +D  RAI++LESAIAM
Sbjct: 361 GMRNGAYGSGNCHFRSSGKEL----MNMPIKKILEMEDALKVAANDRNRAIDMLESAIAM 408

Query: 423 YEKMLELILKEAKAGYNQKE 438
           YE++LELILKEAK G    E
Sbjct: 421 YERLLELILKEAKRGSRNNE 408

[Close]

BLAST of CmaCh16G004250 vs. NCBI nr
Match: gi|657978316|ref|XP_008381094.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica])

HSP 1 Score: 419.1 bits (1076), Expect = 9.7e-114
Identity = 228/431 (52.90%), Postives = 282/431 (65.43%), Query Frame = 1


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 62
           M  S  E+VL SSPDGPI+AYDAS+GT LA F  S SPRRG+T  G+  IA SH+ P T 
Sbjct: 1   MSSSSHEIVLXSSPDGPIIAYDASSGTALAQFTGSRSPRRGLTIVGKPYIAASHVSPTTG 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIH+YNW +SSA  +  VPEPVAPL A  DG YLFAGGLSG +HTLS+PSGDVL SL 
Sbjct: 61  SGSIHLYNWCSSSALHNXQVPEPVAPLAAMSDGAYLFAGGLSGSVHTLSIPSGDVLKSLA 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKP---QENATKHILHQFSAHND 182
            H K VSCL +S D SLLISG DDG+IVV+PIFQLV A      +N    +LH+FSAH+D
Sbjct: 121 VHNKXVSCLGISDDESLLISGSDDGSIVVVPIFQLVAASGYVLYDNVEDLVLHRFSAHSD 180

Query: 183 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 242
           SVT++ S +G+ +SQ++S S+DG CKFWSLL   +L TVVFPCAI  + L+P E EF+AA
Sbjct: 181 SVTAVVSGVGLYTSQVISCSLDGTCKFWSLLXAALLLTVVFPCAIXXIALNPREPEFYAA 240

Query: 243 GSDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKH 302
           GSDG V KG  R   + L+                                +LI+WSPKH
Sbjct: 241 GSDGSVXKGLWRTGKRQLVM----------------------------QGKDLITWSPKH 300

Query: 303 DAAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKE 362
           D  VVS+V++NEG NL+SA+EDG++WVWQV+ GQV+M L NEMGSISDLV AT   + K 
Sbjct: 301 DGGVVSVVMVNEGRNLLSASEDGSVWVWQVDAGQVVMVLANEMGSISDLVAATGTNYSKG 360

Query: 363 RNVRRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 422
            +    + G    S    L    L  +  +  +M   +     D  RAI++LESAI MYE
Sbjct: 361 XDFSASNRGYRNGSCEFGLTGKELTSMPIKMLKMDEMLKVAARDRSRAIDMLESAIGMYE 403

Query: 423 KMLELILKEAK 431
           ++LELILKEAK
Sbjct: 421 RLLELILKEAK 403

[Close]

BLAST of CmaCh16G004250 vs. NCBI nr
Match: gi|1009162129|ref|XP_015899270.1| (PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba])

HSP 1 Score: 415.6 bits (1067), Expect = 1.1e-112
Identity = 223/437 (51.03%), Postives = 290/437 (66.36%), Query Frame = 1


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPI 60
           MS  F P E++L SSPDGPI+A+DAS+G  L  F+DS SPRRG+  AG + IA SHI P 
Sbjct: 1   MSSSF-PYEIILTSSPDGPIIAHDASSGATLTHFSDSRSPRRGLAVAGNTFIAASHISPT 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TA GSIH+YNWW+S+AF ++ VPEPVAP+TAT DG  +FAGGLSGC++ LSLPSGD+L S
Sbjct: 61  TACGSIHLYNWWSSTAFHNLPVPEPVAPITATSDGALIFAGGLSGCVYALSLPSGDILKS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDS 180
           LP+H K VSCL +S DGSLL+SG DDGTI V+PIFQL+ +   EN+   ++ +F+AH+DS
Sbjct: 121 LPSHSKPVSCLGISDDGSLLVSGSDDGTIAVVPIFQLMGSSENENSDYAVMQKFTAHSDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VT+I    G+ +SQI+SSS+D  CKFWSLL GT L TV F C I  +VLDP+E+EF+AAG
Sbjct: 181 VTAIVFGSGLCTSQIISSSLDFTCKFWSLLRGTQLKTVSFRCGILGIVLDPTESEFYAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDG VYK S+                               ++ L     EL+ W  KH+
Sbjct: 241 SDGSVYKASINAG----------------------------SRELANPGHELVEWKEKHE 300

Query: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS-ISDLVIATEKRHEKE 360
             VVS+ ++ EG NLI+A+EDG++WVW V +G+V++ L N MGS ISD+V+A    + K 
Sbjct: 301 GPVVSLAMVKEGRNLITASEDGSVWVWDVERGKVVIELGNTMGSMISDMVVAKGISYGKG 360

Query: 361 RNVRRGSHGRAMK--SESSRL----PSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLES 420
                GS G      SE  R+       M+GL + +T EM+  +     D  RAI++LES
Sbjct: 361 HGSGAGSGGGGSNNGSEEWRIGFCGEELMMGLGMKETMEMEDVLRVAEKDRSRAIDMLES 408

Query: 421 AIAMYEKMLELILKEAK 431
           AI MYEK+LELILKEAK
Sbjct: 421 AIGMYEKLLELILKEAK 408

The following BLAST results are available for this feature:

BLAST of CmaCh16G004250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RID3_ARATH	4.4e-34	29.85	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana GN=RID3 PE=1 SV=1	[more]
WDR18_DANRE	1.0e-22	25.64	WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1	[more]
WDR18_HUMAN	3.0e-22	24.78	WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2	[more]
WDR18_BOVIN	5.6e-21	24.19	WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1	[more]
WDR18_RAT	9.6e-21	23.30	WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1	[more]

BLAST of CmaCh16G004250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0D5_CUCSA	4.6e-195	81.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083560 PE=4 SV=1	[more]
M5WIZ4_PRUPE	2.0e-110	57.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017540mg PE=4 SV=1	[more]
B9T1J9_RICCO	1.1e-108	49.54	WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0216610 PE=4 SV=1	[more]
W9R444_9ROSA	4.7e-107	50.45	WD repeat-containing protein 18 OS=Morus notabilis GN=L484_017513 PE=4 SV=1	[more]
A0A067KXT8_JATCU	8.2e-104	47.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03563 PE=4 SV=1	[more]

BLAST of CmaCh16G004250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49180.1	2.5e-35	29.85	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	9.0e-09	25.41	binding	[more]
AT2G43770.1	3.2e-06	20.24	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of CmaCh16G004250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101671\|ref\|XP_008451730.1\|	1.0e-195	80.59	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis melo]	[more]
gi\|778697541\|ref\|XP_011654344.1\|	6.5e-195	81.28	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Cucumis sativus]	[more]
gi\|645239874\|ref\|XP_008226336.1\|	4.3e-122	54.77	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Prunus mume]	[more]
gi\|657978316\|ref\|XP_008381094.1\|	9.7e-114	52.90	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Malus domestica]	[more]
gi\|1009162129\|ref\|XP_015899270.1\|	1.1e-112	51.03	PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR011047	Quinoprotein_ADH-like_supfam
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004250.1	CmaCh16G004250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 171..208 score: 0.0082coord: 117..151 score: 1.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 114..153 score: 5.2E-6coord: 167..208 score: 0.0085coord: 289..328 score: 0.015coord: 211..249 score:
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 296..337 score: 11.845coord: 121..151 score: 10.375coord: 174..217 score: 9
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	unknown	SSF50998	Quinoprotein alcohol dehydrogenase-like	coord: 10..251 score: 1.18E-42coord: 288..345 score: 1.18
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 288..350 score: 4.1E-20coord: 176..251 score: 4.1E-20coord: 4..175 score: 7.8
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 79..217 score: 13.211coord: 296..337 score: 11
None	No IPR available	unknown	Coil	Coil	coord: 408..428 scor
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 6..252 score: 1.4E-149coord: 273..440 score: 1.4E
None	No IPR available	PANTHER	PTHR18763:SF3	SUBFAMILY NOT NAMED	coord: 6..252 score: 1.4E-149coord: 273..440 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004250	Cucsa.273600	Cucumber (Gy14) v1	cgycmaB0759
CmaCh16G004250	Cla002443	Watermelon (97103) v1	cmawmB311
CmaCh16G004250	Csa4G083560	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004250	MELO3C016114	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004250	ClCG07G010110	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004250	CSPI04G08000	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004250	CmoCh16G004570	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004250	Lsi07G002910	Bottle gourd (USVL1VR-Ls)	cmalsiB329
CmaCh16G004250	Cp4.1LG14g03560	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004250	MELO3C016114.2	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004250	CsaV3_4G008220	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004250	Cla97C07G136790	Watermelon (97103) v2	cmawmbB350
CmaCh16G004250	Bhi01G002500	Wax gourd	cmawgoB0437
CmaCh16G004250	CsGy4G007870	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004250	Carg11356	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004250	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G004250	Cucurbita maxima (Rimu)	cmacmaB353
CmaCh16G004250	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G004250	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004250	Wild cucumber (PI 183967)	cmacpiB345
CmaCh16G004250	Watermelon (Charleston Gray)	cmawcgB288
CmaCh16G004250	Watermelon (97103) v1	cmawmB325
CmaCh16G004250	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G004250	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004250	Bottle gourd (USVL1VR-Ls)	cmalsiB311
CmaCh16G004250	Cucumber (Gy14) v2	cgybcmaB500
CmaCh16G004250	Silver-seed gourd	carcmaB0052
CmaCh16G004250	Silver-seed gourd	carcmaB0053
CmaCh16G004250	Cucumber (Chinese Long) v3	cmacucB0396
CmaCh16G004250	Watermelon (97103) v2	cmawmbB340
CmaCh16G004250	Wax gourd	cmawgoB0451