Lsi06G011480 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATGTCGTACTTGTTAAACAAATATTAACAAACGTGGGCTTTGTTTATTGGTCTGTCTTCATCCAATATAACCGGCGGGTGAAGTTTGGGCGTTGTATCTCGAAGCGAAAATCTACTTTATAGTTTATCCTCTCGACTTTCTCCTCAGCACACTCACAGCAGCTTTCAACAATGGCGTCGACAATATCTCTGAGTGCTCAACTGCCAAATCTCCGAGGAATTTCTGATTTGAAAAAGCGAAGTTAGTTCCATTCTATAACTCCTTTTCTCTTTTTCATTTTCTTTGGTTGCTGAGACCGTAGGAATTTGAGTTTATATTGATTCCTGTATCTCTGAATTGAATTGGTTGCTTGGGGCTTACTTCTCTATTGTATAGCATGTAACTATTTCGCAACCACTCAATCGAACGGTGGGATCTCGGTTGGTGCGGGTGGTTAGTATGGCGTAGTTCATTGGGAAGATTTGCCGATCGGTTGAAGTTTAGATCTAAAATAGGATTGTCTGGCGGTGTCCTCAGTTCTTATTACTGGATGGGTTAGGTTCATTTCTATTTAAGAATTATTGGTTTCTTCGTAGAATCAAAGTAAAATTGTGATAGCTGAGTGGGGGAGACTCTCTTGATTTGAAGGCAAATGTGTTCTGTGTACATTATTGTGTAAAGAACATGAAAGAAGAAGGCTGTAATCTGGGAAATTAACTTTGAAAACTATTTAATAAGTTTGGATAAGCCTCAAAACTTTCTACCACTAGGGTTAACTTAGCTGTAAGATTATCCTCCTGAAAAACAGTTTATTGAGAAGGAATGCCATGAACCAGTCAAGTTTAATTCTTAATTTGTAACCTAGACTGAAGCTGGTTGCATATCTGATAATGCCAATGTCAGAACTGAATACATCCCCTTTCTACTTCATTAGAACTCTTTAACAAGCTCGATATATCAAAAGAATCTCGGCTGGTTTAGAGTGACCTTTTGAGTGCTGAAAAAAGTGTTTTTGAGTGTTAAAAGAAGTCATTTTAAGCACTTAGGAAGTCATTACAAACAGGCCTTGTTGTGCAGGATGGTTTTGGAATTTAGTGTTACATTTGATTGTGAAAATGGATATAACACATGGAGTTTGGACAATAGAAATTTCCAAATTTTCATTCTGAAAATGGAGACGTAGTCCACTTTATGTGACATTTGATTGTGCACACTATACTTATTGATATATAATTTATCCTTTTTCTGGCTGCCTCTTACAGGCAACCTTAGTTCAATGTTAAATATAGTTGGTGCGCGGATCTCGCCATATGGTCCTTGGAAAGTGGAGAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATAACGAGGAGAAGAGTGATGATGCACCTTCAAAGGTAGAACTTTTATCTGTAATATGTTTAAAACAGTACAAATTTTGATATCATGCTCAATTAAAATTGTCATTTTCAGTAATTTAGTCCAAACAGAAATGTCTCTCAAAGTATTGAAAGTGACTTTTCATTGCAAGTGAGGTGAGACCATCGTCACTTACATGCTAACTTTTTTTAGGCAGGAATCTTTGGAAACATGCAGAAATTATATGAAACTGTGAGGACAGCTCAAAAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCGGCGTAAGACCAAACAAGTTAAATAAATGTATTGTCACTTGAAGACGTTTTTCTCTGTTTTGTGAATTTGTCTGAACTTTTTTCCCCCCTTCTATGTCTCTGTTTTCCAGGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTATGTTCTGCCTTTCTCTCTTGCACCAAGTTCATCTTCACTTTGCCCCGAACTATGCGATCACAAAGGTTGTTAGAGAAGTGAACGTGTGTAAGAATTTTGCTTAAGATTGTAAAGTATGTTTTCCCTCTTGATTTTAGGTAGCTAGTAAATAAGTACAGATTTTAGAGTAGTGACCTGTATTTATTTTGGGTACTACTTGTAAGGATGAACAGGTCTAGAGTTTGTGATTACTAATCTTTCTTTCTCGTTTTAAGATGATAAGTGTATCCAATTTCCTTATATTCAACCGGGTTGTTGTGGATTTAAAATCTCTTGGGGCCTCTCCCTGAGATGTTAATTGTAAATATTTTTGTAGTATCAATGATAGTTACACCGGGAATTCCTACGGGCATGGAAAGTTCAGGGAATTTTGAAAGAGTAAAAATCACGATTTTTGAAAAGAATTATAGAAGTATAGAGCTCGCGACAAAAGGTTGTGGATTTGAAATTGGTTTCATGCAAGGCCTAGCATAGTCTTTTCATTTGATGAGAATTATGATATAAAAGAATGGGTTCATATCATGTTTGAATCAGCTCATATCTGCCCTAATAATTCTCTGTCGACTAATATAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATTACTGAGGCTGCCATGAAGTTAGGACCAGAAGTGAGTATGCACAGTGCTGTAGTGCACTCTAACATTTGAAATGGCATTGCTCGTAATAGGCATTTTTATGTTGAACTTCTATTTACATCTTCAAGTCACAATTTAATGCTGCACCACCTGTCCTTTCCTCAATCCAAGCTTGGAGTACATCTTCTGTTGGTGCCGGGTGAAATGGAATTATGACTCTTAACACCACACATGAGTTTGAAAATTGGTTGCCTATACAACTAAGACTCGCCTACATTGGCACATGGCTCAAAAAAGTTTGACAACCATACTTGAATATTTTAAGGATGGTTGTCAGTAACATTGTAAAAGTTATGTTTCTTAGGATATTTCTTGAATGGGTGGTTTCCATGGTGAAATAATGACCATTAAACTTTCTAATTGTGCTTAATGATAGATATTTATTCCAAATATTCAGATCTTTACTTTCATATGCAGAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGTAAACTTATTCCAATTGTAATTTAGTTACCAAGTTTTATTTCTGCAGAACTGACTGTTGGCCCTTTGATTCTCAGGCTATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGCCTCAATGAGGGATTAAAGTAGACGTTTTATGTTCGTCGAGCATCAGTTTTGAGAATGCAGCAGTAGTGGGACGACTCCATTGTAATCTGACCTTGGCAGCAAATTCCATATTAGTTTTTATTGGCGAACTAAATGTTTGGTTACAAACCTTGTTCTCCATCTCTAGATGTAAAAAAGACAAGCTGTGATATTTATTGTGGTATCAGAACAAAGAATCAAAAGAATGGGATGAGAATGAGATTTCAAATTGGAATCTTCTGTAGAAGCGATATCGACACTGGCATTTGGGTTTGCTAAGGGGAAAGTTATTTGACAATGTATGGAAATTTGATTTCTTGAAAAGAAAGAGCTTAAAACTTCTACTTTGTGTAATAACTGGCAAATGTTAGTAAAATAATCTTTGTCCAACCTTTTCATTTGGAACTTGAAATGGGTAATAACATTGACATGGTGTATCCCATATAAATTGTAGAATGAATAATACGTTTCTAGTTCCCTAAATCTCAGCACTGTTATGTACTGGAATTGTTGCAAATTTATGACCAATATCTAGAAACGAGACAAATGACCAGTTTCTTGTTCTGTGTTCATTGGTCTGTTTCTCTGCAGATTATAAATCAAGATCTTGGCAGATGTTTTCCTGCTAGAAACGATCTGAAAAGTGTCAAAGCTCTCTGTGGTTGGATCAATGGAACTTCATGCCCTGCTCCTCTCACTGTGGCAAAGGTTAGCCCTTCATAAACCTCTGTCCATCCACCAACCTGCCAAGTACATTTCATTCAATTTGATTAAAGCATTTCATTCAAACAAAGAACAAAATAAATAAATAAATAAATAAAAATAAGGCAGAGTTCTTCATATGTAACCTGTCTTCTGGAGTACCATGGATACCAGCGAGTTTTAATGGGGAGGTTGAGATGGCTGAGGGCAAATCTTGTGGCTGTCACTGGAACCACTGAATCTGTGTCCCCACTGCATTTTTCCAAATGTACATGTCACATTGAAGAAGTATAATAGCACTAAACTTTGGAGTTGTATCAATTAAAACTATGAACTTTTGTAAGTGTATTGATCTACACCTTCCTCCAGATTTCATTCGAC TATGTCGTACTTGTTAAACAAATATTAACAAACGTGGGCTTTGTTTATTGGTCTGTCTTCATCCAATATAACCGGCGGGTGAAGTTTGGGCGTTGTATCTCGAAGCGAAAATCTACTTTATAGTTTATCCTCTCGACTTTCTCCTCAGCACACTCACAGCAGCTTTCAACAATGGCGTCGACAATATCTCTGAGTGCTCAACTGCCAAATCTCCGAGGAATTTCTGATTTGAAAAAGCGAAGCAACCTTAGTTCAATGTTAAATATAGTTGGTGCGCGGATCTCGCCATATGGTCCTTGGAAAGTGGAGAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATAACGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAATTATATGAAACTGTGAGGACAGCTCAAAAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCGGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATTACTGAGGCTGCCATGAAGTTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGCTATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGCCTCAATGAGGGATTAAAGTAGACGTTTTATGTTCGTCGAGCATCAGTTTTGAGAATGCAGCAGTAGTGGGACGACTCCATTGTAATCTGACCTTGGCAGCAAATTCCATATTAGTTTTTATTGGCGAACTAAATGTTTGGTTACAAACCTTGTTCTCCATCTCTAGATGTAAAAAAGACAAGCTGTGATATTTATTGTGGTATCAGAACAAAGAATCAAAAGAATGGGATGAGAATGAGATTTCAAATTGGAATCTTCTGTAGAAGCGATATCGACACTGGCATTTGGGTTTGCTAAGGGGAAAGTTATTTGACAATGTATGGAAATTTGATTTCTTGAAAAGAAAGAGCTTAAAACTTCTACTTTGTGTAATAACTGGCAAATGTTAGTAAAATAATCTTTGTCCAACCTTTTCATTTGGAACTTGAAATGGGTAATAACATTGACATGGTGTATCCCATATAAATTGTAGAATGAATAATACGTTTCTAGTTCCCTAAATCTCAGCACTGTTATGTACTGGAATTGTTGCAAATTTATGACCAATATCTAGAAACGAGACAAATGACCAGTTTCTTGTTCTGTGTTCATTGGTCTGTTTCTCTGCAGATTATAAATCAAGATCTTGGCAGATGTTTTCCTGCTAGAAACGATCTGAAAAGTGTCAAAGCTCTCTGTGGTTGGATCAATGGAACTTCATGCCCTGCTCCTCTCACTGTGGCAAAGGTTAGCCCTTCATAAACCTCTGTCCATCCACCAACCTGCCAAGTACATTTCATTCAATTTGATTAAAGCATTTCATTCAAACAAAGAACAAAATAAATAAATAAATAAATAAAAATAAGGCAGAGTTCTTCATATGTAACCTGTCTTCTGGAGTACCATGGATACCAGCGAGTTTTAATGGGGAGGTTGAGATGGCTGAGGGCAAATCTTGTGGCTGTCACTGGAACCACTGAATCTGTGTCCCCACTGCATTTTTCCAAATGTACATGTCACATTGAAGAAGTATAATAGCACTAAACTTTGGAGTTGTATCAATTAAAACTATGAACTTTTGTAAGTGTATTGATCTACACCTTCCTCCAGATTTCATTCGAC ATGGCGTCGACAATATCTCTGAGTGCTCAACTGCCAAATCTCCGAGGAATTTCTGATTTGAAAAAGCGAAGCAACCTTAGTTCAATGTTAAATATAGTTGGTGCGCGGATCTCGCCATATGGTCCTTGGAAAGTGGAGAAAAATAATAGATCTCTTTGCGTTTATGGTCTATTTGGAGGAAAAAAGGATAACGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAATTATATGAAACTGTGAGGACAGCTCAAAAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCGGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAATCAGCAACCTATTCGCACAGAGATTACTGAGGCTGCCATGAAGTTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCAGGCTATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGTATGCCCCAGGGCCTCAATGAGGGATTAAAGTAG MASTISLSAQLPNLRGISDLKKRSNLSSMLNIVGARISPYGPWKVEKNNRSLCVYGLFGGKKDNEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLNEGLK
BLAST of Lsi06G011480 vs. Swiss-Prot
Match: EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana GN=At2g24020 PE=2 SV=2) HSP 1 Score: 207.6 bits (527), Expect = 1.2e-52 Identity = 113/147 (76.87%), Postives = 125/147 (85.03%), Query Frame = 1
BLAST of Lsi06G011480 vs. Swiss-Prot
Match: EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana GN=At4g30620 PE=1 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 3.4e-52 Identity = 114/142 (80.28%), Postives = 124/142 (87.32%), Query Frame = 1
BLAST of Lsi06G011480 vs. Swiss-Prot
Match: Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2) HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1
BLAST of Lsi06G011480 vs. Swiss-Prot
Match: Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.7e-14 Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 1
BLAST of Lsi06G011480 vs. Swiss-Prot
Match: Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 7.0e-13 Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 1
BLAST of Lsi06G011480 vs. TrEMBL
Match: A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256760 PE=4 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 2.6e-91 Identity = 179/188 (95.21%), Postives = 183/188 (97.34%), Query Frame = 1
BLAST of Lsi06G011480 vs. TrEMBL
Match: A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 1.4e-68 Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 1
BLAST of Lsi06G011480 vs. TrEMBL
Match: B9IMC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11460g PE=4 SV=2) HSP 1 Score: 258.1 bits (658), Expect = 8.5e-66 Identity = 139/196 (70.92%), Postives = 161/196 (82.14%), Query Frame = 1
BLAST of Lsi06G011480 vs. TrEMBL
Match: W9RZY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003694 PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65 Identity = 131/172 (76.16%), Postives = 149/172 (86.63%), Query Frame = 1
BLAST of Lsi06G011480 vs. TrEMBL
Match: D7U1C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g00330 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63 Identity = 136/196 (69.39%), Postives = 156/196 (79.59%), Query Frame = 1
BLAST of Lsi06G011480 vs. TAIR10
Match: AT2G24020.1 (AT2G24020.1 Uncharacterised BCR, YbaB family COG0718) HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54 Identity = 113/147 (76.87%), Postives = 125/147 (85.03%), Query Frame = 1
BLAST of Lsi06G011480 vs. TAIR10
Match: AT4G30620.1 (AT4G30620.1 Uncharacterised BCR, YbaB family COG0718) HSP 1 Score: 206.1 bits (523), Expect = 1.9e-53 Identity = 114/142 (80.28%), Postives = 124/142 (87.32%), Query Frame = 1
BLAST of Lsi06G011480 vs. NCBI nr
Match: gi|659086286|ref|XP_008443852.1| (PREDICTED: uncharacterized protein LOC103487347 [Cucumis melo]) HSP 1 Score: 344.7 bits (883), Expect = 9.9e-92 Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 1
BLAST of Lsi06G011480 vs. NCBI nr
Match: gi|449457887|ref|XP_004146679.1| (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus]) HSP 1 Score: 342.8 bits (878), Expect = 3.8e-91 Identity = 179/188 (95.21%), Postives = 183/188 (97.34%), Query Frame = 1
BLAST of Lsi06G011480 vs. NCBI nr
Match: gi|802592327|ref|XP_012071523.1| (PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]) HSP 1 Score: 267.3 bits (682), Expect = 2.0e-68 Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 1
BLAST of Lsi06G011480 vs. NCBI nr
Match: gi|743807629|ref|XP_011018043.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X2 [Populus euphratica]) HSP 1 Score: 266.9 bits (681), Expect = 2.6e-68 Identity = 142/196 (72.45%), Postives = 163/196 (83.16%), Query Frame = 1
BLAST of Lsi06G011480 vs. NCBI nr
Match: gi|743807625|ref|XP_011018042.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X1 [Populus euphratica]) HSP 1 Score: 261.5 bits (667), Expect = 1.1e-66 Identity = 142/210 (67.62%), Postives = 163/210 (77.62%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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