Csa1G256760 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G256760
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nucleoid-associated protein ybaB; contains IPR004401 (Nucleoid-associated protein YbaB)
Location	Chr1 : 12559341 .. 12563299 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATATGAACGGCCGGTGATGTTTAGGCTTAGTCTCTCAAAGCTAAAATCTTCTTTATAGTTTATCCTCTCCACTTTCTATTCAGCATATTAACAGCAGCTTTGAGCAATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGTTAGTCCCATTCTTCAACTCTTTCTCTCTTTTCATTTTCTTCTGTTTGCTCATACCTTAGGAATTTGAGTTTTTTCGATCCATTGCGAATTGCTGTATCTCTGGATTTAATTCCTTGCTTGGGACTTACTTCTCTATTGTATAGTTTGTACCTATTTCTTAACCACTCAATCTAACGGTGGGATCTAAGTTGGTGCGGGTGGTTAGTTTGGCGTAGATTGGGAAGATTTGCCAATCGGTTGAAGTTTAGACCCTAAATAGAATTGTCTGGCGGCGGTGTCCTTAGTTCTTATTACTGGATGGGTTATGTTCATTTCTATTCAATAAATTATTGTTTTTTCGTAGAATTATAGTAAAATTGTGATAGGTGAGTGGGGGAGATTCTCTTGATTTGAGCATGTAGGCAGATGAGTCTTGTATAATCCATTGAACTTAAAAGAGAAAGACTGTGTTCTGGGTAATTTACTTGAAAACTATTCAATAAGTTTGGATAGACCTCAAAACTTTTTAACTAACTTAGATGCGAGTAGTGTTTTAATAAATTTGATTTTTTTGTAGTTAATAAAGAAGGACAAGCCCTTATTATTACTATTTTCTTAAAATAATACAAAAGCCTCACAGCCCAGAGGAGGCATGCCTTATTTTGTGAACCTATCTTTCTTTTAAGGCGAGGTGCCTTTTAAACCACTGGTTGTGAGGGTAATTTCGTGGAACACAGTTTATTGAGAAGGAATGGCATGAACCAGTCAAGTTTAATTCTTAATTTCTAATATGGACTGAAGATGGTTGCATATCTGATAATGCCAATGTGAGAACTGAACAAATCCCATGTCTGCTTCATGAGAACTCTTTAACAAACTAGATAGATACATCAAAAGAAACAGGGCTGGTTCCAAATGACTTTTTAAGTGCTAAAACAAGCGTTTTCAATTGTACAAACAGAGTGTTTTTAAGTACTCAGGAAGTCATTCCAAACAGAACCTTAGCTGTGTAGGACTGTTTTAGAATTTAGTGTTTTCTTTTCTGTATTTTGCAATTTGAATATAATACTTTGGAGTTTGGACGATAGAAATTTCCAATTTTCCATTCTGAAATTGGAGACAAATTCCACTCTTTGTGAAATTTGATTGTACACAAAACACTTATTAATGCATGTTATGCTTTTCTGTCTGGCTCTTACAGGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGTAGAACTTTTATCTGCAATATGATTAAAGACATCATAACTTTTGATATCATGCTCAATAAAATTGTCATTTTCAGTAATTTAGATATCAAACAGAAATGTTTATCATATTTGAGAGACTGAAAGTGACTTTTGTTTGCAAGTGAGGTGAGACCATCGTTACTTACATGCTAACTTTTTTTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGTAAGACCAAACAAGTTAAATAAATGTATTGCCACTTGGAGATGTCTTTCTGTAATTTACGAAGTTGTTTGAATTTTTTTTTTTCCCTTCCATGTTTCTGTTTTCCAGGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTATGTCCCGCCTTCCTCTCTTGCATCAAGTTCATTTTCACTTTGCCGAGAACTATACGATAAAAGAGGTTGTTAGAGAAGTGAGCGTGTGTTACATTTTTGCTTACGATTGTAAATATGTTTTCCATCTTGATTTTAGGGTACTAGTAAATATGAACGGATTCTAGAGGAATGACTTGAATTTATCTTGGGTACTGCTTAAAAAGGATGCCAGGTCTAGAGCTTGTGATTACTTATCTTTCTATGTCGTTTTAAGATGATAAGTATATCCAATTTCTTGAATAACCGAGTTGTATTGGAATTAAAATCTCTTGGGGCCATCTCCCTGAGATGTTGATTGTTATAAAATATTTTTGTTGCATCAATCGACAGTGTTCCAGTGTTGATTCCCATGGACATGGAAAGTCCAGCGAATTTTAAAAAAGTGAAGTTCACGATTTATCAAAAGAATTAAATAAGCATTGAGCTTGCGACAGAAGGTTATGGATTTGACAATTGGTTTCATACAAGGCTAGGATAGGCTTTTCATTTAATGAAAATTATTATATAAAAGAATGGGTTCATATCATGTTGAATATCACCGCGTATCTACCCTAATATTTTTCTGTCGACTAATATAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAGTGAGTATGCACAATGCTGTAGACTGTAATGCACTCTAACATTTAGCATTTTTACATTGAACTTCTATTTACATCCACTCAAAGTCACAACTTAATGCTGCACCACCTGTCATGTCCTCAATGCAAGCTTGGAGTATATCTTCTCTTGGTGCTAGGTGGAATAATGACTTTTCACTCCACGTGAGTTTGAAAATTGGCTGGCTACAGGAATAAGACCCGCCAACATTGGCACATGGCTCAAAAAAGTTTGACAAGTTGACAACCATACTTGAATATTTTAAGAATAGTTACCAGTAACATTTGTAAAAGTTATGGTCCCTAGAATATTTCTTGAATGGGTGTTTTCCATTGTGAAATAGGTCATTAAAATTTCTGAACGTGGTTAATGATGGATTTCATATTCCAAAAAAGAAATATTCTGATCTTTACTTTCTTATGCAGAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGTAAGAATTCTTCCAATAGTAATTTAATTACCAAGTTTTGTTTCTTCCGAACTGACTGTTGACTCTATGATTCTCAGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAGACATTTTATGTCCGTCGAGCATCAGTTTTGTGAACACAGCCGCAGCGGGACGACTTAATTGTAATCTGACCTCGGCATCAAATTCCATATTAGTTTTTACTGGTGAACTAAATGTTTGGGAACGAAACCTTGTTCTCCATCTCTAAATGTAAAAAAGACAAGCTATGATGTTTATTGTGGTATCAGAACAAAGAATCAAAAGAATGAGATGAGAACGAGATTGTCGAATTGCGCTTCTATCGATGCTGGCATTTGAATTCTTGAAAAGGAGCTTTAAACTTATAATGTGTGTAATCACCGACAAATGTTAGTAAAATAATCTTTGTTCAACCTTTCCATTTGGAACTTGAAATTGGTAATAACATTGACTTGGTGTATCCAATATAAATTGTAGAATGAATACGATTCTAGTCCCCTAAATCTCAGCACTGTTGTGTACTGGAATTGTTTCAAATTTATGACCAATATATATCTAGAAACAAGACAAACGACCAGTATCTTCTTCTGTGTTCATTGGTCTGTTTCTTTGCAGATATTAAATCAAGATTTTGGCAGATGTTTTCCTGCTAAAAACGATCTGAAAAGTGTCAAAGCTCTCTGTGGTTGAATCAATGGAACTTCATGCCCTGCTCCTCTCACTGTGGCAAAGGTTAGCCCTTCATAAACCTCTGTCCAT

mRNA sequence

ATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Coding sequence (CDS)

ATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQGLSEGLK*

Homology

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BLAST of Csa1G256760 vs. Swiss-Prot
Match: EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana GN=At2g24020 PE=2 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 8.7e-56
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 1


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 LAMKQRMSDLAQSLGMPQGLSEGLK 188
           +AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

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BLAST of Csa1G256760 vs. Swiss-Prot
Match: EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-54
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSVLAMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

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BLAST of Csa1G256760 vs. Swiss-Prot
Match: Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

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BLAST of Csa1G256760 vs. Swiss-Prot
Match: Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

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BLAST of Csa1G256760 vs. Swiss-Prot
Match: Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-14
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L E  + AQ+V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  
Sbjct: 13  GKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPD 72

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           A+  G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 73  ALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

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BLAST of Csa1G256760 vs. TrEMBL
Match: A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 2.2e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

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BLAST of Csa1G256760 vs. TrEMBL
Match: A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.1e-68
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKR-------SNLNSMSNIVGTRL-SPYGPWKVEKNNRSL 60
           M ST ++S ++ NL G++D+K+         NL+   N+VG +L S  G WK  +++RSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVYGLFGGKKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFD 120
           CV+GLFGGKKD  EKSDDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSD 180
           GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLV EAY+DAHQKSV AMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLSEGLK 188
           LAQSLGMP G+SEGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]

BLAST of Csa1G256760 vs. TrEMBL
Match: B9IMC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11460g PE=4 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 3.8e-66
Identity = 140/196 (71.43%), Postives = 161/196 (82.14%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKR-------SNLNSMSNIVGTRLSPY-GPWKVEKNNRSL 60
           MAST +++AQ+ NL G+ D+K+         NLN  +N+VG +L  + G  K E+N RS 
Sbjct: 29  MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 88

Query: 61  CVYGLFGGKKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFD 120
            V GLFGGKK+  EKSDDAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELA+AEFD
Sbjct: 89  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 148

Query: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSD 180
           GYCEGELIKVTL+GNQQP+RTEITEAAMELG EKLSLLVTEAY+DAHQKSV AMK+RM+D
Sbjct: 149 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMND 208

Query: 181 LAQSLGMPQGLSEGLK 188
           LAQSLGMP G+ EGLK
Sbjct: 209 LAQSLGMPPGVGEGLK 224

[Close]

BLAST of Csa1G256760 vs. TrEMBL
Match: W9RZY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003694 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.6e-64
Identity = 129/172 (75.00%), Postives = 147/172 (85.47%), Query Frame = 1


Query: 17  ISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGGKKD-EEKSDDAPSKAG 76
           +S      N+NS +NIVG ++  YG  K+  N RSLCVYGLFGGKK+  EK+DDA SKAG
Sbjct: 2   VSTIPLTGNINSTANIVGKQIPWYGCRKLRHNRRSLCVYGLFGGKKENNEKADDASSKAG 61

Query: 77  IFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEIT 136
           IFGNMQ LYETV+ AQ VVQVEAV+VQKELA AEFDG+CEGELIKVTLSGNQQP+RTEIT
Sbjct: 62  IFGNMQNLYETVKKAQMVVQVEAVKVQKELAVAEFDGFCEGELIKVTLSGNQQPVRTEIT 121

Query: 137 EAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQGLSEGLK 188
           EAAMELGPEKLSLL+TEAY+DAHQKSV AMK+RMSDLAQSLGMP GL++ L+
Sbjct: 122 EAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMSDLAQSLGMPPGLNDSLQ 173

[Close]

BLAST of Csa1G256760 vs. TrEMBL
Match: A0A067F7L8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029494mg PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.7e-64
Identity = 139/192 (72.40%), Postives = 155/192 (80.73%), Query Frame = 1


Query: 1   MASTISLSAQLPNL---RGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNN-RSLCVYG 60
           MAST + +AQ+ ++   +  S     +NLN  SN+ G  +  +   +   +  RSL VYG
Sbjct: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60

Query: 61  LFGGKKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD  EK DDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFDGYCE
Sbjct: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120

Query: 121 GELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQS 180
           GELIKVTLSGNQQP+RTEITEAAMELG EKLSLLVTEAY+DAHQKSVLAMK+RMSDLAQS
Sbjct: 121 GELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVLAMKERMSDLAQS 180

Query: 181 LGMPQGLSEGLK 188
           LGMPQGLSEGLK
Sbjct: 181 LGMPQGLSEGLK 192

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BLAST of Csa1G256760 vs. TAIR10
Match: AT2G24020.1 (AT2G24020.1 Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-57
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 1


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 LAMKQRMSDLAQSLGMPQGLSEGLK 188
           +AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Csa1G256760 vs. TAIR10
Match: AT4G30620.1 (AT4G30620.1 Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 213.0 bits (541), Expect = 1.6e-55
Identity = 113/140 (80.71%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSVLAMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of Csa1G256760 vs. NCBI nr
Match: gi|449457887|ref|XP_004146679.1| (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 3.2e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of Csa1G256760 vs. NCBI nr
Match: gi|659086286|ref|XP_008443852.1| (PREDICTED: uncharacterized protein LOC103487347 [Cucumis melo])

HSP 1 Score: 359.4 bits (921), Expect = 3.9e-96
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISD KKRSNLN MSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV AMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of Csa1G256760 vs. NCBI nr
Match: gi|743807629|ref|XP_011018043.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X2 [Populus euphratica])

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKR-------SNLNSMSNIVGTRLSPY-GPWKVEKNNRSL 60
           MAST +++AQ+ NL G+ D+K+         NLN  +N+VG +L  + G WK E+N RS 
Sbjct: 1   MASTTAVTAQVTNLNGLCDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKWKSERNYRSF 60

Query: 61  CVYGLFGGKKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFD 120
            V GLFGGKK+  EKSDDAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSD 180
           GYCEGELIKVTL+GNQQP+RTEITEAAMELGPEKLSLLVTEAY+DAHQKSV AMK+RM+D
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 181 LAQSLGMPQGLSEGLK 188
           LAQSLGMP GL EGLK
Sbjct: 181 LAQSLGMPPGLGEGLK 196

[Close]

BLAST of Csa1G256760 vs. NCBI nr
Match: gi|802592327|ref|XP_012071523.1| (PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas])

HSP 1 Score: 265.8 bits (678), Expect = 5.8e-68
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKR-------SNLNSMSNIVGTRL-SPYGPWKVEKNNRSL 60
           M ST ++S ++ NL G++D+K+         NL+   N+VG +L S  G WK  +++RSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVYGLFGGKKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFD 120
           CV+GLFGGKKD  EKSDDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSD 180
           GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLV EAY+DAHQKSV AMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLSEGLK 188
           LAQSLGMP G+SEGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]

BLAST of Csa1G256760 vs. NCBI nr
Match: gi|743807625|ref|XP_011018042.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X1 [Populus euphratica])

HSP 1 Score: 262.7 bits (670), Expect = 4.9e-67
Identity = 143/210 (68.10%), Postives = 163/210 (77.62%), Query Frame = 1


Query: 1   MASTISLSAQLPNLRGISDFKKR---------------------SNLNSMSNIVGTRLSP 60
           MAST +++AQ+ NL G+ D+K+                       NLN  +N+VG +L  
Sbjct: 1   MASTTAVTAQVTNLNGLCDWKRPFPASLPLACSALWIEVAGRHYGNLNLNANVVGKQLLS 60

Query: 61  Y-GPWKVEKNNRSLCVYGLFGGKKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVE 120
           + G WK E+N RS  V GLFGGKK+  EKSDDAPSKAGIFGNMQ LYETV+ AQ VVQVE
Sbjct: 61  WSGKWKSERNYRSFRVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVE 120

Query: 121 AVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDA 180
           AVRVQKELA+AEFDGYCEGELIKVTL+GNQQP+RTEITEAAMELGPEKLSLLVTEAY+DA
Sbjct: 121 AVRVQKELASAEFDGYCEGELIKVTLTGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDA 180

Query: 181 HQKSVLAMKQRMSDLAQSLGMPQGLSEGLK 188
           HQKSV AMK+RM+DLAQSLGMP GL EGLK
Sbjct: 181 HQKSVQAMKERMNDLAQSLGMPPGLGEGLK 210

The following BLAST results are available for this feature:

BLAST of Csa1G256760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EBFC2_ARATH	8.7e-56	77.24	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana GN=...	[more]
EBFC1_ARATH	2.8e-54	80.71	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana GN=...	[more]
Y1054_SYNP6	2.6e-15	45.10	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
Y464_SYNE7	2.6e-15	45.10	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
Y5067_NOSS1	4.9e-14	45.10	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) ...	[more]

BLAST of Csa1G256760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWF8_CUCSA	2.2e-98	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256760 PE=4 SV=1	[more]
A0A067KR51_JATCU	4.1e-68	72.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1	[more]
B9IMC7_POPTR	3.8e-66	71.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11460g PE=4 SV=2	[more]
W9RZY9_9ROSA	3.6e-64	75.00	Uncharacterized protein OS=Morus notabilis GN=L484_003694 PE=4 SV=1	[more]
A0A067F7L8_CITSI	4.7e-64	72.40	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029494mg PE=4 SV=1	[more]

BLAST of Csa1G256760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24020.1	4.9e-57	77.24	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	1.6e-55	80.71	Uncharacterised BCR, YbaB family COG0718	[more]

BLAST of Csa1G256760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457887\|ref\|XP_004146679.1\|	3.2e-98	100.00	PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus]	[more]
gi\|659086286\|ref\|XP_008443852.1\|	3.9e-96	98.40	PREDICTED: uncharacterized protein LOC103487347 [Cucumis melo]	[more]
gi\|743807629\|ref\|XP_011018043.1\|	1.2e-68	72.96	PREDICTED: uncharacterized protein LOC105121190 isoform X2 [Populus euphratica]	[more]
gi\|802592327\|ref\|XP_012071523.1\|	5.8e-68	72.96	PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]	[more]
gi\|743807625\|ref\|XP_011018042.1\|	4.9e-67	68.10	PREDICTED: uncharacterized protein LOC105121190 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004401	YbaB/EbfC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU096702	cucumber EST collection version 3.0	transcribed_cluster
CU100144	cucumber EST collection version 3.0	transcribed_cluster
CU101801	cucumber EST collection version 3.0	transcribed_cluster
CU109570	cucumber EST collection version 3.0	transcribed_cluster
CU140255	cucumber EST collection version 3.0	transcribed_cluster
CU177569	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G256760.1	Csa1G256760.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU109570	CU109570	transcribed_cluster
CU100144	CU100144	transcribed_cluster
CU096702	CU096702	transcribed_cluster
CU140255	CU140255	transcribed_cluster
CU177569	CU177569	transcribed_cluster
CU101801	CU101801	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004401	Nucleoid-associated protein YbaB/EbfC family	GENE3D	G3DSA:3.30.1310.10		coord: 78..182 score: 1.3
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 91..176 score: 6.7
IPR004401	Nucleoid-associated protein YbaB/EbfC family	unknown	SSF82607	YbaB-like	coord: 92..180 score: 8.76
None	No IPR available	PANTHER	PTHR33449	FAMILY NOT NAMED	coord: 1..187 score: 4.6
None	No IPR available	PANTHER	PTHR33449:SF1	NUCLEOID-ASSOCIATED PROTEIN YBAB	coord: 1..187 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G256760	Cla018740	Watermelon (97103) v1	cuwmB085
Csa1G256760	MELO3C010214	Melon (DHL92) v3.5.1	cumeB060
Csa1G256760	ClCG06G012460	Watermelon (Charleston Gray)	cuwcgB072
Csa1G256760	Lsi06G011480	Bottle gourd (USVL1VR-Ls)	culsiB076
Csa1G256760	MELO3C010214.2	Melon (DHL92) v3.6.1	cumedB053
Csa1G256760	Cla97C06G121700	Watermelon (97103) v2	cuwmbB071
Csa1G256760	Bhi02G000678	Wax gourd	cuwgoB103
Csa1G256760	CSPI01G17750	Wild cucumber (PI 183967)	cpicuB004
Csa1G256760	Cucsa.093440	Cucumber (Gy14) v1	cgycuB099
Csa1G256760	CmaCh11G004550	Cucurbita maxima (Rimu)	cmacuB102
Csa1G256760	CmoCh11G004550	Cucurbita moschata (Rifu)	cmocuB091
Csa1G256760	Cp4.1LG18g05680	Cucurbita pepo (Zucchini)	cpecuB356
Csa1G256760	Cp4.1LG04g08680	Cucurbita pepo (Zucchini)	cpecuB641
Csa1G256760	CsGy1G017930	Cucumber (Gy14) v2	cgybcuB006
Csa1G256760	CsGy1G016280	Cucumber (Gy14) v2	cgybcuB008
Csa1G256760	Carg09999	Silver-seed gourd	carcuB0136
Csa1G256760	Carg14082	Silver-seed gourd	carcuB0532

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G256760	Bottle gourd (USVL1VR-Ls)	culsiB066
Csa1G256760	Cucurbita maxima (Rimu)	cmacuB067
Csa1G256760	Cucurbita moschata (Rifu)	cmocuB056