Carg09999 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09999
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nucleoid-associated protein
Location	Cucurbita_argyrosperma_scaffold_030 : 906321 .. 910235 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATTACTAAACTACCCCTTTTTTTTTCCCTCTCTTCTTCCCATTTTACCCCTCATCTCCAAGCCTCAAACAGCTTTTTCGAAGATGGAGAAGGTAAAGGACTAAGTTGTCCAAAGTGCTTAATTAACATTTTACTATGATTAAAAAATAAGCCTATTTCTTAGTGTTTTGAATTATGTTTGGATTAATTATCTTTAATAAAACTTAGTGGTATCTTTATAAGCATCTATGTTGAGTGCTACAACATCTATGTGGTATCTTATAAGCATATATGGGTGGAGGGGGTTCGGGAGATGTTACTTGATCTTCACCTTTTTCAACTGTTCAATCCTCTAGCCCCGATCACGATTTAAAAATGCTCAATATGATGCGAAACTAGCTCGAGATTTAGCTTAAATTCTACTTTTATTAACTACACGAAGTTACTTCTACTTACCTCAGATCATCCCACCTCATTAGAACCAAAACGCAATACTTGCCGTAAATATGCATTACAATCAATCTATTTTGTCAAGTAAGTTTAATTTAATATTTTATATTTGTTAAAATAAATATTAAGAAACGTGGTCTTTTTTTATTGGTCCGTTCTTTAAGAAGTGTAAGCCGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATAGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTTAGTGCCATTCTTTAACTCTTTTTCTCTCTGAACTCTTTTTTTTTTTTTGGTTGATGAGACCGTAGGAAATTGAGTTTGGATTGTTTGCTGTATCTCTGTATAGAATTGGTTGCTTGGGACTTAGTTCTGTATTGCATATTATGTAGCTATTTCGTAACCACTCAATCGAACGGAGGGATCTAAGTTGGTGCAGGTGATTAGTATGGCGTTTAAACCTAAAATGGAACTGTCTGGCGGTGTCCTCAGTTCTTATTACTGGATGGGTTAGGTTCATTTCTATATAAGAATTATTAATTTTTCGTAGAATCGAAGTAAATTTGTGATAGATGAGTGGGGGAGATCCTCTTGATTTGAGCTTGGAGGCAGATGGGTCCTGTGTACATTTTTTTTTTTTTTGTAAAGAACATGAAAGAAAAAGACTGTGATCTGGGAAATTAACTTGAAAACTATTTAATAAGTTTGGATAAGCCTCAAAACTTTCTAGTACTAGGGTTAACTGTAAGATTATCCACCTGAAAAACAGTTCATAGATAAGGAATGACATGAACCAGTCAAGTTTAGTTCTTAATTCGTAACCTAGACTGAAGCAGGTTGCATGTCTCATAATGCCAATGTCAGAACTGAACAAATCCCGTCTACTTCATTAGTAAATTTTAACAAGCTAGATATGTTTTGATTGACTTTCCAATTGTTGAAATGAGTATTTTATGTCAAAGAAAGTAGGAAGTCACTCCGAACGTGCACGACAATTTTAGAATTTGGTGGTTTGTTTTTTATAATTTGAATGTAATACTTTGGAGTTTGGAGAATATAAATTTGTCTGCTGCTGCAAAGTCCTCGTTTATTTCCAAAATTTCATTCTGAAATTGGAGACGAAGACCACTTCTTGTGACATTTAACTATACTTATTAATGTAGAATTTGTTCTTTTCTGGCTGCCTCTTACAGGTAACCTAAATTCAATGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGCCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTCTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGTAGAAGTTTGATCCGCAATATGATTAAAACAGTATAAATTTTGATATCATGCTCAATAAATTTGTCATCTTCAGTAATTTAGAGACCAAACAGAAATGTCTTTCAAAGTCAGGGAACCGAAAGTGACTTTTCCTTGACCTGCTAACTTCTTTTAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGTAAGACTAAACAAGTTAAATACCTCTTGAAGATGTTTTTCTCTGTTTTATTATGATGCCTGAACATTTTTTTCCCTCTATGTTTCTGTTTTCCAGGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCCACCTTTTTCTCTTGCGCCAAGTTCATCTTCACCTTGACCATAACTATGTGATCGCAAAGGTTGTTAGTGAAGTGAACATGTGTTGAATTTTGCTTAAGATTGTAAAATATGTTTCCCCGTCTTGAGTTTAGGTAGCTAGTAAATAAGAACAGATTCTGAAGTATTGACTTATCTTTATCATTATTGTATTTGTTTTAGGTGTTACTTAGAGAGATGAACACGTCTAGAGTTTGTGATTACCAATCTTTCTCTCTTGTTTTAAGATGATAAGTGGATCCAATTTCTTCATATTCAACCAGGTTGTTGTGGATTTAAAATCTCTTGGGGCCATCTCCCTGAGATGTTAATTGGTTCCATGCAAGGCCTAGCATAGCCATCTCATTTGATGAGAATTATTAAATTAGAGAATGGGTTCATATCCGTTTTGAATAACACCTCGTATCTGCCTAACAGTTTTCGTTCGACTAATTTAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACTCTAACATTTGAAATGGCATTGCTCCTAATAAGCATCTTTATATTGAACTAATATTTACATCCTCAAGTCACAACTTAATGCTGCACCACCTCTCCTGTCCTAATCCAAGCTCGGAGTATATCTTCTTCCATGTTGGTGCCCGGTGGAATTAGACCTTACAAGTTTGAAAATTGGCCGGCTATAAGACTAAGACCTACCCATTGCTAGCAGATATTGTCTTCTTTGGGCTTTCCTTTTCAGATTTTCCCTCAAGATTTTTGAAACGTGTCTGCTAGGAAGAGGTTTCCACACCCATCAAAAGAATGTTTCGTTCTTCTCACAAACCAATGTGGGATCTCACGTTTACACAGTGAAATAACAACTATTAAAATTTCTGATTGTGGTTAATGATGAACATTCCAAATATTCAGAGCTTTACTTTACTATGCAGAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGATGCACATCAGAAGAGTGTTCAGGTAAGACCTGTTCCAATACGATTTTAGTTACCAAGTCTTATTTATGCAGAACTGACGATTGGTCCTTTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACCGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTTTTCTCCATCTCTAAATGTAAAAAAGACAAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAGAACGAGATTTCAAATTGGAATCTGCTATAGAAGTAATATCGACACTGGCATTTGGGTTTGCTCATAGGAAGGACATTTGATTTCTTGAGAAGAAAAGGCTTAAAACTAATGGCTTAAAATTAATGGAAGAATGAGTGATCTCTTCTGGATCATGATGTTACCACTTGGCCCTCGATGGGCAGTGGGGGATTCAATATAGTAACTCACGTTCGGTTGCGCTGTGCGTTCCCGTTGGACATGTGTTAGC

mRNA sequence

CAGAATTACTAAACTACCCCTTTTTTTTTCCCTCTCTTCTTCCCATTTTACCCCTCATCTCCAAGCCTCAAACAGCTTTTTCGAAGATGGAGAAGAAGTGTAAGCCGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATAGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAATGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGCCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTCTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGATGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACCGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTTTTCTCCATCTCTAAATGTAAAAAAGACAAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAGAACGAGATTTCAAATTGGAATCTGCTATAGAAGTAATATCGACACTGGCATTTGGGTTTGCTCATAGGAAGGACATTTGATTTCTTGAGAAGAAAAGGCTTAAAACTAATGGCTTAAAATTAATGGAAGAATGAGTGATCTCTTCTGGATCATGATGTTACCACTTGGCCCTCGATGGGCAGTGGGGGATTCAATATAGTAACTCACGTTCGGTTGCGCTGTGCGTTCCCGTTGGACATGTGTTAGC

Coding sequence (CDS)

ATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAATGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGCCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTCTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGATGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK

Homology

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BLAST of Carg09999 vs. NCBI nr
Match: XP_023516534.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 1.2e-96
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGISDLKKRSNLNS SNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

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BLAST of Carg09999 vs. NCBI nr
Match: XP_022988592.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 360.5 bits (924), Expect = 3.4e-96
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQVPNLRGIS LKKR+NLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGLGEGLK
Sbjct: 181 QGLGEGLK 188

[Close]

BLAST of Carg09999 vs. NCBI nr
Match: XP_022921745.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 357.1 bits (915), Expect = 3.7e-95
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKENGEK DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEK-DDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGLGEGLK
Sbjct: 181 QGLGEGLK 187

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BLAST of Carg09999 vs. NCBI nr
Match: XP_004146679.1 (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hypothetical protein Csa_1G256760 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 2.9e-87
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISD KKRSNLNSMSNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Carg09999 vs. NCBI nr
Match: XP_022135106.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Momordica charantia])

HSP 1 Score: 322.0 bits (824), Expect = 1.3e-84
Identity = 166/188 (88.30%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PN+RGISD K+RSNLNSMSNIVG RI+ +GPWKV KN+RS CV GLFG 
Sbjct: 1   MASTISLSAQLPNMRGISDWKQRSNLNSMSNIVGVRITSHGPWKVHKNNRSFCVYGLFGK 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAMKLGPEKLSLLVTEAY+DAHQKSVQAMK RM+DLAQSLGMP
Sbjct: 121 KVTLSGNQQPVRTEITEAAMKLGPEKLSLLVTEAYKDAHQKSVQAMKLRMNDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLNEGLK 188

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BLAST of Carg09999 vs. TAIR10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 207.6 bits (527), Expect = 6.7e-54
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKD-NNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Carg09999 vs. TAIR10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-53
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 48  NSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELA 107
           N+RSL V GLFGG K+  +  +D  SKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELA
Sbjct: 43  NNRSLRVNGLFGGGKK--DNKEDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELA 102

Query: 108 AAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMK 167
            AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AMK
Sbjct: 103 VAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMK 162

Query: 168 QRMSDLAQSLGMPQGLGEGLK 189
           +RMSDLAQSLGMP GL +GLK
Sbjct: 163 ERMSDLAQSLGMPPGL-DGLK 180

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BLAST of Carg09999 vs. Swiss-Prot
Match: sp|O82230|EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-52
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKD-NNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Carg09999 vs. Swiss-Prot
Match: sp|Q9M098|EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 48  NSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELA 107
           N+RSL V GLFGG K+  +  +D  SKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELA
Sbjct: 43  NNRSLRVNGLFGGGKK--DNKEDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELA 102

Query: 108 AAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMK 167
            AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV AMK
Sbjct: 103 VAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMK 162

Query: 168 QRMSDLAQSLGMPQGLGEGLK 189
           +RMSDLAQSLGMP GL +GLK
Sbjct: 163 ERMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of Carg09999 vs. Swiss-Prot
Match: sp|Q5N376|Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Carg09999 vs. Swiss-Prot
Match: sp|Q8GMT0|Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.8e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of Carg09999 vs. Swiss-Prot
Match: sp|Q8YM73|Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 81  MQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAM 140
           M+ L E  + AQQ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+
Sbjct: 15  MKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPDAL 74

Query: 141 KLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
             G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 75  AQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]

BLAST of Carg09999 vs. TrEMBL
Match: tr|A0A0A0LWF8|A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.9e-87
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISD KKRSNLNSMSNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Carg09999 vs. TrEMBL
Match: tr|A0A1S3B9T2|A0A1S3B9T2_CUCME (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487347 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 7.8e-73
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLN MSNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAH 160
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAH
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAH 158

[Close]

BLAST of Carg09999 vs. TrEMBL
Match: tr|A0A2K1WZ09|A0A2K1WZ09_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G105600v3 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKK-------RSNLNSMSNIVGARISPY-GPWKVEKNSRSL 60
           MAST +++AQV NL G+ D K+         NLN  +N+VG ++  + G  K E+N RS 
Sbjct: 1   MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
            V GLFGGKKEN EKSDDAPSKAGIFGNMQNLYETV+ AQ VVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTL+GNQQP+RTEITEAAM+LG EKLSLLVTEAY+DAHQKSVQAMK+RM+D
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP G+GEGLK
Sbjct: 181 LAQSLGMPPGVGEGLK 196

[Close]

BLAST of Carg09999 vs. TrEMBL
Match: tr|A0A067KR51|A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 144/196 (73.47%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 1   MASTISLSAQVPNLRGISDLKK-------RSNLNSMSNIVGAR-ISPYGPWKVEKNSRSL 60
           M ST ++S +V NL G++D K+         NL+   N+VG + IS  G WK  ++SRSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
           CV GLFGGKK+N EKSDDAPSKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLLV EAY+DAHQKSVQAMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP G+ EGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]

BLAST of Carg09999 vs. TrEMBL
Match: tr|A0A2P5AZF3|A0A2P5AZF3_PARAD (Nucleoid-associated protein YbaB/EbfC family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_285900 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 143/194 (73.71%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MASTISLSAQVPN------LRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCV 60
           MASTI L+ Q+ N       R  S     SN++S +++VG +IS      V  NSRSL V
Sbjct: 1   MASTIPLTGQISNPQMTDWRRPSSFSVSPSNVSSSASVVGNKISWCEYRNVRHNSRSLSV 60

Query: 61  CGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGY 120
            GLFGGKK+N EKS+DAPSKAGIFGNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFDGY
Sbjct: 61  HGLFGGKKDNNEKSEDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGY 120

Query: 121 CEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLA 180
           CEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLL+TEAY+DAHQKSVQAMK+RMSDLA
Sbjct: 121 CEGELIKVTLSGNQQPVRTEITEAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMSDLA 180

Query: 181 QSLGMPQGLGEGLK 189
           QSLGMPQGL + LK
Sbjct: 181 QSLGMPQGLNDALK 194

The following BLAST results are available for this feature:

BLAST of Carg09999 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516534.1	1.2e-96	99.47	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_022988592.1	3.4e-96	98.94	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima]	[more]
XP_022921745.1	3.7e-95	98.94	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata]	[more]
XP_004146679.1	2.9e-87	91.49	PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hy...	[more]
XP_022135106.1	1.3e-84	88.30	nucleoid-associated protein At4g30620, chloroplastic-like [Momordica charantia]	[more]

BLAST of Carg09999 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24020.1	6.7e-54	75.34	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	9.6e-53	77.30	Uncharacterised BCR, YbaB family COG0718	[more]

BLAST of Carg09999 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82230\|EBFC2_ARATH	1.2e-52	75.34	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9M098\|EBFC1_ARATH	1.7e-51	77.30	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q5N376\|Y1054_SYNP6	5.8e-15	47.06	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
sp\|Q8GMT0\|Y464_SYNE7	5.8e-15	47.06	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
sp\|Q8YM73\|Y5067_NOSS1	7.1e-13	46.00	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of Carg09999 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWF8\|A0A0A0LWF8_CUCSA	1.9e-87	91.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]
tr\|A0A1S3B9T2\|A0A1S3B9T2_CUCME	7.8e-73	91.19	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=365...	[more]
tr\|A0A2K1WZ09\|A0A2K1WZ09_POPTR	2.0e-68	73.47	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G105600v3 PE=...	[more]
tr\|A0A067KR51\|A0A067KR51_JATCU	2.0e-68	73.47	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1	[more]
tr\|A0A2P5AZF3\|A0A2P5AZF3_PARAD	3.2e-66	73.71	Nucleoid-associated protein YbaB/EbfC family OS=Parasponia andersonii OX=3476 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036894	YbaB-like_sf
IPR004401	YbaB/EbfC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09999-RA	Carg09999-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 92..177 e-value: 3.9E-17 score: 62.2
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	FAMILY NOT NAMED	coord: 1..188
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	G3DSA:3.30.1310.10		coord: 77..185 e-value: 5.6E-21 score: 76.4
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	SSF82607	YbaB-like	coord: 93..181
None	No IPR available	PANTHER	PTHR33449:SF3	SUBFAMILY NOT NAMED	coord: 1..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09999	Cla018740	Watermelon (97103) v1	carwmB0126
Carg09999	Csa1G256760	Cucumber (Chinese Long) v2	carcuB0136
Carg09999	MELO3C010214	Melon (DHL92) v3.5.1	carmeB0131
Carg09999	ClCG06G012460	Watermelon (Charleston Gray)	carwcgB0125
Carg09999	CSPI01G17750	Wild cucumber (PI 183967)	carcpiB0138
Carg09999	CmaCh11G004550	Cucurbita maxima (Rimu)	carcmaB0169
Carg09999	CmoCh11G004550	Cucurbita moschata (Rifu)	carcmoB0175
Carg09999	Lsi06G011480	Bottle gourd (USVL1VR-Ls)	carlsiB117
Carg09999	Cp4.1LG04g08680	Cucurbita pepo (Zucchini)	carcpeB0186
Carg09999	Cp4.1LG18g05680	Cucurbita pepo (Zucchini)	carcpeB0185
Carg09999	CsGy1G017930	Cucumber (Gy14) v2	carcgybB0132
Carg09999	MELO3C010214.2	Melon (DHL92) v3.6.1	carmedB0135
Carg09999	CsaV3_1G029020	Cucumber (Chinese Long) v3	carcucB0142
Carg09999	Cla97C06G121700	Watermelon (97103) v2	carwmbB0133
Carg09999	Bhi02G000678	Wax gourd	carwgoB0165

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09999	Carg14082	Silver-seed gourd	carcarB151

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09999	Silver-seed gourd	carcarB154
Carg09999	Cucurbita maxima (Rimu)	carcmaB0165
Carg09999	Cucurbita maxima (Rimu)	carcmaB0166
Carg09999	Cucurbita moschata (Rifu)	carcmoB0172
Carg09999	Cucumber (Chinese Long) v2	carcuB0133
Carg09999	Watermelon (97103) v2	carwmbB0132
Carg09999	Wax gourd	carwgoB0160