Cp4.1LG18g05680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g05680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUPF0133 protein
LocationCp4.1LG18 : 6194088 .. 6197412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTGGTCCGTTCTTTAAGAAGTGTAAGCGGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATGGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTTAGTGCCATTCTTGAACTCTTTTTCTCTCTGAACTCTTTTTTTTTTCTTTTGGTTGCTGAGACCGTAGGAAATTGAGTTTGGATTGTTTGCTGTATCTCTGTATAGAATTGGTTGCTTGGGATTTAGTTTTGTATTGCATATTATGTAGCTATTTCGTAACCACTCAATCAAACGGAGGGATCTAAGTTGGTGCAGGTGATTAGTATGGCGTTTAGACCTAAAATGGAACTGTCTGGCGGTGCCCTCAGTTCTTATTACTTGATGGGTTAGGTTCATTTCTATATAAGAATTATAAATTTTTCGTAGAATCGAAGTAAATTTGTGATAGATGAGTGGGGGAGATCCTCTTGATTTGAACTTGGAGGCAGATGGGTCCTGTGTACATTTTTTTTTTTTGTAAAGAACATGAAAGAAAAAGGCTGTGATCTGGGAAATTAACTTGAAAACTATTTAATAAGTTTGGATAAGCCTCAAAAATTTCTAGTACTAAGGTTAACTGTAAGATTATCCACCTGAAAAACAGTTCATAGATAAGGAATTACATGAACCAGTCCAGTTTAGTTCTTAATTCGTAACCTAGACTGAAGCAGGTTGCATGTCTCATAATGCCAATGTCAGAACTGAATAAATCCTGTCTACTTCATTAGAAAATTTTAACAAGCTAGATATGTTTTGAATGACTTTCCAATTGTTGAAATGAGTATTTTATGTCAAAGAAAGTAGGAAGTCACTCCGAACGTGCGCGACAATTTTAGAATTTGGTGGTTTGTTTTTTATAATTTGAATGTAATACTTTGGAGTTCGGAGAATATATATTTTTCTGCTGCTGCAAAGTTGTCGTTTATTTCCAAAATTTCATTCTGAAATTGGAGACGAAGACCACTTTTTGTGACATTTGATTGTACACACTACACTTATTAATGTAGAATTTGTTCTTTTCTGGCTGCCTCTTACAGGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGTAGAATTTTGATCCGCAATATGATTAAAACAGTATAAACTTTTATATCATGCTCAATAAATTTGTCATCTTCAGTAATTTAGAGACCAAACAGAAATGTCTTTCAAAGTCAGGGAACCGAAAGTGACTTTTCCTTGACCTGCTAACTTCTTTTAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGTAAGACTAAACAAGTCAAATACATCTTGAAGATGTTTTTCTCTGTTTTATTATGTTGCCTGAACATTTTTTTCCCTCTATGTTTCTGTTTTCCAGGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCCACCTTTATCTCTTGCGCCAAGTTCATCTTCACCTTGACCATAACTATGTGATCGCAAAGGTTGTTAGTGAATTGAACGTGTGTTGAATTTTGCTTAAGATTGTAAAATATGTTTCCCCGTCTTGAGTTTAGGTAGCTAGTAAATAAGAACACATTCTGAAGTAATGACTTGTATTTATCATTAATGTATTTGTTTTAAGTGTTACTTAGAGGGACGAACACGTCTAGAGTTTGTGATTACCAATCTTTCTTTCTTGTTTTAAGATGATAAGTGGATCCAATTTCTTTATATTCAACCAGGTTGTTGTGGATTTAAAATCTCTTGGGGCCATCTCCCTGAGATGTTAATTGGTTCCATGCAAGGCCTAGCATAGCCATCTCATTTGATGAGAATTATTAAATTAAAGAATGGGTTCATAGCCACCTCGCATCTGCCTAACATTTTTTGTTCGACTAATTTAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACTCTAACATTTGAAATGGCATTGCTCCTAATAAGCATCTTTATATTGAACTAATATTTACATCCTCAAGTCGCAACTTAATGCTGCACCACCTGTCCTGTCCTAATCCAAGCTCGGAGTATATCTTCTTCCATGTTGGTGCCCGGTGGAATTAGACCTCACAAGTTTGAAAATTGGCCGGCTACAAGACTAAGGCCTGCCTGCGTTGGAAGTTGGCTATCAAATAAATTGATATCCATAATTGACTATCTAAGAATATAGTTGCCAGTAACGTTGTAAAAAATATGTTTGCTAGGATATTTCTTGAATGGGAGGTTTACCGTAACGGCCCAAACCCACTGCTACCAGATTTCCCCTCAAGATTTTTAAAACGTGTCTGCTAGAAGAGGTTTGTACACCCATCAAAAGAATGTTTCGTTCTTCTCACAAACCAACGTGGGATCTCACATTTACACAGTGAAATAATAACTATTAAAATTTCTGATTGTGTTTAATGATGAACATTCCAAATATTCAGAGATTTACTTTACTATGCAGAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGTAAGACCTGTTCCAATACGAATTTAGTTACCAAGTCTTATTTATGCAGAACTGACGGTTGGTCCTTTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACTGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAACGTTTGGGAACCTTTTTCTCCATCTCTAAATGTATAAAAGACGAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAAAACGAGATTTCAAATTTGAATCTGCTATAGAAGTGATATCGACATTGGCATTTGGGTTTGATCAAGGGAAAGACATTTGATTTCTTGAAAAGAAAAAAGGCCTAATGGAAGAATGAGTGATCTGTTCCCTTGC

mRNA sequence

TATTGGTCCGTTCTTTAAGAAGTGTAAGCGGTAGGTGATGTTTGGAAGCGAAAATCTACTAAATAGTTCATGGTTTATCCTCTCGAATTTCTCCTCGACACATTCACAGCTTTGAGCAATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAGACTGTTTATGTGCGTCGAGCATCAGTTTTGTAAACGCAGCGGCAGTGAGACGACTAATTGTAATCCGACTTCTGCAGCAAATTCCATATTGGTTTTTACTGGTGAACTAAACGTTTGGGAACCTTTTTCTCCATCTCTAAATGTATAAAAGACGAGCTGTGATACTTACTGTGGTATCAAAGAATCGAAAGAATGAGATGAAAACGAGATTTCAAATTTGAATCTGCTATAGAAGTGATATCGACATTGGCATTTGGGTTTGATCAAGGGAAAGACATTTGATTTCTTGAAAAGAAAAAAGGCCTAATGGAAGAATGAGTGATCTGTTCCCTTGC

Coding sequence (CDS)

ATGGCGTCGACAATATCTCTGAGTGCTCAAGTGCCAAATCTCCGAGGGATTTCTGATTTGAAGAAGCGAAGTAACCTAAATTCAAAGTCAAATATAGTTGGTGCGCGGATCTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAGTAGATCTCTTTGTGTTTGTGGTTTATTTGGGGGAAAAAAGGAGAATGGGGAGAAGAGTGATGATGCGCCTTCAAAGGCAGGAATCTTTGGAAATATGCAGAATTTATATGAGACTGTGAGGACGGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGTGTACAAAAAGAACTTGCAGCGGCAGAATTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGGAACCAGCAACCTCTTCGCACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAACTTTCCCTTCTGGTTACTGAAGCATATCGGGACGCACATCAGAAGAGTGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCTCAGAGCTTAGGCATGCCCCAGGGCCTCGGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK
Homology
[Close]
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match: EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana GN=At2g24020 PE=2 SV=2)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 1 

Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNN-SEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match: EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 114/162 (70.37%), Postives = 131/162 (80.86%), Query Frame = 1 

Query: 27  NSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYE 86
           +S+ NIV       G      N+RSL V GLFGG K++ +  +D  SKAGI GNMQNLYE
Sbjct: 27  SSRQNIVWLNRKQSG-----NNNRSLRVNGLFGGGKKDNK--EDGQSKAGILGNMQNLYE 86

Query: 87  TVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEK 146
           TV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EK
Sbjct: 87  TVKKAQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEK 146

Query: 147 LSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           LSLLVTEAY+DAH KSV AMK+RMSDLAQSLGMP GL +GLK
Sbjct: 147 LSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180

[Close]
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match: Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQV Q  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match: Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1 

Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L +  + AQQV Q  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match: Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 79  GNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEA 138
           G M+ L E  + AQQV Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  
Sbjct: 13  GKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPD 72

Query: 139 AMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 181
           A+  G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 73  ALAQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match: A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 6.7e-87
Identity = 171/188 (90.96%), Postives = 179/188 (95.21%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISD KKRSNLNS SNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match: A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 144/196 (73.47%), Postives = 163/196 (83.16%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR-------SNLNSKSNIVGAR-ISPYGPWKVEKNSRSL 60
           M ST ++S +V NL G++D K+         NL+   N+VG + IS  G WK  ++SRSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
           CV GLFGGKK+N EKSDDAPSKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLLV EAY+DAHQKSVQAMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP G+ EGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match: B9IMC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11460g PE=4 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 144/196 (73.47%), Postives = 164/196 (83.67%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR-------SNLNSKSNIVGARISPY-GPWKVEKNSRSL 60
           MAST +++AQV NL G+ D K+         NLN  +N+VG ++  + G  K E+N RS 
Sbjct: 29  MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 88

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
            V GLFGGKKEN EKSDDAPSKAGIFGNMQNLYETV+ AQ VVQVEAVRVQKELA+AEFD
Sbjct: 89  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 148

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTL+GNQQP+RTEITEAAM+LG EKLSLLVTEAY+DAHQKSVQAMK+RM+D
Sbjct: 149 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMND 208

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP G+GEGLK
Sbjct: 209 LAQSLGMPPGVGEGLK 224

[Close]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match: W9RZY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003694 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 132/172 (76.74%), Postives = 149/172 (86.63%), Query Frame = 1 

Query: 17  ISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAG 76
           +S +    N+NS +NIVG +I  YG  K+  N RSLCV GLFGGKKEN EK+DDA SKAG
Sbjct: 2   VSTIPLTGNINSTANIVGKQIPWYGCRKLRHNRRSLCVYGLFGGKKENNEKADDASSKAG 61

Query: 77  IFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEIT 136
           IFGNMQNLYETV+ AQ VVQVEAV+VQKELA AEFDG+CEGELIKVTLSGNQQP+RTEIT
Sbjct: 62  IFGNMQNLYETVKKAQMVVQVEAVKVQKELAVAEFDGFCEGELIKVTLSGNQQPVRTEIT 121

Query: 137 EAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           EAAM+LGPEKLSLL+TEAY+DAHQKSVQAMK+RMSDLAQSLGMP GL + L+
Sbjct: 122 EAAMELGPEKLSLLITEAYKDAHQKSVQAMKERMSDLAQSLGMPPGLNDSLQ 173

[Close]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match: A0A061GJC2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037033 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 142/196 (72.45%), Postives = 159/196 (81.12%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR-------SNLNSKSNIVGAR-ISPYGPWKVEKNSRSL 60
           MAST +++AQ+ NL   +D KK         NLN  +N+ G + +S  G  K  ++ +SL
Sbjct: 1   MASTSAVTAQILNLHEATDWKKPIPSSLALGNLNFSTNLAGKQFLSSSGRRKSGRSYKSL 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
            V GLFGGKKENGEK DDAPSKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  RVYGLFGGKKENGEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIK TLSGNQQP+R EITEAAM+LGPEKLS LV EAY+DAHQKSVQAMK+RMSD
Sbjct: 121 GYCEGELIKATLSGNQQPVRIEITEAAMELGPEKLSELVNEAYKDAHQKSVQAMKERMSD 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMPQGLGEGLK
Sbjct: 181 LAQSLGMPQGLGEGLK 196

[Close]
BLAST of Cp4.1LG18g05680 vs. TAIR10
Match: AT2G24020.1 (AT2G24020.1 Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 207.2 bits (526), Expect = 8.7e-54
Identity = 110/146 (75.34%), Postives = 124/146 (84.93%), Query Frame = 1 

Query: 43  WKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRV 102
           +K +   RSL V GLFGG  ++   S+D  SKAGIFGNMQN+YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNN-SEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 103 QKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKS 162
           QKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 163 VQAMKQRMSDLAQSLGMPQGLGEGLK 189
           V AMK+RMSDLAQSLGMP GL EG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]
BLAST of Cp4.1LG18g05680 vs. TAIR10
Match: AT4G30620.1 (AT4G30620.1 Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 203.8 bits (517), Expect = 9.6e-53
Identity = 114/162 (70.37%), Postives = 131/162 (80.86%), Query Frame = 1 

Query: 27  NSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYE 86
           +S+ NIV       G      N+RSL V GLFGG K++ +  +D  SKAGI GNMQNLYE
Sbjct: 27  SSRQNIVWLNRKQSG-----NNNRSLRVNGLFGGGKKDNK--EDGQSKAGILGNMQNLYE 86

Query: 87  TVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEK 146
           TV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EK
Sbjct: 87  TVKKAQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEK 146

Query: 147 LSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           LSLLVTEAY+DAH KSV AMK+RMSDLAQSLGMP GL +GLK
Sbjct: 147 LSLLVTEAYKDAHSKSVLAMKERMSDLAQSLGMPPGL-DGLK 180

[Close]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: gi|659086286|ref|XP_008443852.1| (PREDICTED: uncharacterized protein LOC103487347 [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 2.5e-87
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISDLKKRSNLN  SNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSVQAMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: gi|449457887|ref|XP_004146679.1| (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 9.6e-87
Identity = 171/188 (90.96%), Postives = 179/188 (95.21%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60
           MASTISLSAQ+PNLRGISD KKRSNLNS SNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 QGLGEGLK 189
           QGL EGLK
Sbjct: 181 QGLSEGLK 187

[Close]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: gi|743807629|ref|XP_011018043.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X2 [Populus euphratica])

HSP 1 Score: 276.6 bits (706), Expect = 3.3e-71
Identity = 147/196 (75.00%), Postives = 166/196 (84.69%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR-------SNLNSKSNIVGARISPY-GPWKVEKNSRSL 60
           MAST +++AQV NL G+ D K+         NLN  +N+VG ++  + G WK E+N RS 
Sbjct: 1   MASTTAVTAQVTNLNGLCDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKWKSERNYRSF 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
            V GLFGGKKEN EKSDDAPSKAGIFGNMQNLYETV+ AQ VVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTL+GNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSVQAMK+RM+D
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP GLGEGLK
Sbjct: 181 LAQSLGMPPGLGEGLK 196

[Close]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: gi|743807625|ref|XP_011018042.1| (PREDICTED: uncharacterized protein LOC105121190 isoform X1 [Populus euphratica])

HSP 1 Score: 271.2 bits (692), Expect = 1.4e-69
Identity = 147/210 (70.00%), Postives = 166/210 (79.05%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR---------------------SNLNSKSNIVGARISP 60
           MAST +++AQV NL G+ D K+                       NLN  +N+VG ++  
Sbjct: 1   MASTTAVTAQVTNLNGLCDWKRPFPASLPLACSALWIEVAGRHYGNLNLNANVVGKQLLS 60

Query: 61  Y-GPWKVEKNSRSLCVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVE 120
           + G WK E+N RS  V GLFGGKKEN EKSDDAPSKAGIFGNMQNLYETV+ AQ VVQVE
Sbjct: 61  WSGKWKSERNYRSFRVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVE 120

Query: 121 AVRVQKELAAAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDA 180
           AVRVQKELA+AEFDGYCEGELIKVTL+GNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DA
Sbjct: 121 AVRVQKELASAEFDGYCEGELIKVTLTGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDA 180

Query: 181 HQKSVQAMKQRMSDLAQSLGMPQGLGEGLK 189
           HQKSVQAMK+RM+DLAQSLGMP GLGEGLK
Sbjct: 181 HQKSVQAMKERMNDLAQSLGMPPGLGEGLK 210

[Close]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match: gi|802592327|ref|XP_012071523.1| (PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas])

HSP 1 Score: 267.7 bits (683), Expect = 1.5e-68
Identity = 144/196 (73.47%), Postives = 163/196 (83.16%), Query Frame = 1 

Query: 1   MASTISLSAQVPNLRGISDLKKR-------SNLNSKSNIVGAR-ISPYGPWKVEKNSRSL 60
           M ST ++S +V NL G++D K+         NL+   N+VG + IS  G WK  ++SRSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVCGLFGGKKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFD 120
           CV GLFGGKK+N EKSDDAPSKAGI GNMQNLYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSD 180
           GYCEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLLV EAY+DAHQKSVQAMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLGEGLK 189
           LAQSLGMP G+ EGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g05680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EBFC2_ARATH1.5e-5275.34Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana GN=... [more]
EBFC1_ARATH1.7e-5170.37Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana GN=... [more]
Y1054_SYNP65.7e-1547.06Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ... [more]
Y464_SYNE75.7e-1547.06Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P... [more]
Y5067_NOSS11.4e-1346.08Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) ... [more]
BLAST of Cp4.1LG18g05680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWF8_CUCSA6.7e-8790.96Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256760 PE=4 SV=1[more]
A0A067KR51_JATCU1.1e-6873.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1[more]
B9IMC7_POPTR1.1e-6873.47Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11460g PE=4 SV=2[more]
W9RZY9_9ROSA1.9e-6576.74Uncharacterized protein OS=Morus notabilis GN=L484_003694 PE=4 SV=1[more]
A0A061GJC2_THECC1.9e-6572.45Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037033 PE=4 SV=1[more]
BLAST of Cp4.1LG18g05680 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G24020.18.7e-5475.34 Uncharacterised BCR, YbaB family COG0718[more]
AT4G30620.19.6e-5370.37 Uncharacterised BCR, YbaB family COG0718[more]
BLAST of Cp4.1LG18g05680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086286|ref|XP_008443852.1|2.5e-8791.49PREDICTED: uncharacterized protein LOC103487347 [Cucumis melo][more]
gi|449457887|ref|XP_004146679.1|9.6e-8790.96PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus][more]
gi|743807629|ref|XP_011018043.1|3.3e-7175.00PREDICTED: uncharacterized protein LOC105121190 isoform X2 [Populus euphratica][more]
gi|743807625|ref|XP_011018042.1|1.4e-6970.00PREDICTED: uncharacterized protein LOC105121190 isoform X1 [Populus euphratica][more]
gi|802592327|ref|XP_012071523.1|1.5e-6873.47PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004401YbaB/EbfC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g05680.1Cp4.1LG18g05680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004401Nucleoid-associated protein YbaB/EbfC familyGENE3DG3DSA:3.30.1310.10coord: 79..183
score: 3.8
IPR004401Nucleoid-associated protein YbaB/EbfC familyPFAMPF02575YbaB_DNA_bdcoord: 92..177
score: 3.9
IPR004401Nucleoid-associated protein YbaB/EbfC familyunknownSSF82607YbaB-likecoord: 93..181
score: 1.02
NoneNo IPR availablePANTHERPTHR33449FAMILY NOT NAMEDcoord: 1..188
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g05680Cucsa.093440Cucumber (Gy14) v1cgycpeB0183
Cp4.1LG18g05680CmaCh11G004550Cucurbita maxima (Rimu)cmacpeB132
Cp4.1LG18g05680CmoCh11G004550Cucurbita moschata (Rifu)cmocpeB108
Cp4.1LG18g05680Cla018740Watermelon (97103) v1cpewmB372
Cp4.1LG18g05680Csa1G256760Cucumber (Chinese Long) v2cpecuB356
Cp4.1LG18g05680MELO3C010214Melon (DHL92) v3.5.1cpemeB334
Cp4.1LG18g05680ClCG06G012460Watermelon (Charleston Gray)cpewcgB335
Cp4.1LG18g05680CSPI01G17750Wild cucumber (PI 183967)cpecpiB351
Cp4.1LG18g05680Lsi06G011480Bottle gourd (USVL1VR-Ls)cpelsiB307
Cp4.1LG18g05680MELO3C010214.2Melon (DHL92) v3.6.1cpemedB392
Cp4.1LG18g05680CsaV3_1G029020Cucumber (Chinese Long) v3cpecucB0429
Cp4.1LG18g05680Bhi02G000678Wax gourdcpewgoB0466
Cp4.1LG18g05680CsGy1G016280Cucumber (Gy14) v2cgybcpeB051
Cp4.1LG18g05680CsGy1G017930Cucumber (Gy14) v2cgybcpeB040
Cp4.1LG18g05680Carg09999Silver-seed gourdcarcpeB0185
Cp4.1LG18g05680Carg14082Silver-seed gourdcarcpeB0715
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g05680Cp4.1LG04g08680Cucurbita pepo (Zucchini)cpecpeB360
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g05680Wax gourdcpewgoB0454
Cp4.1LG18g05680Cucurbita pepo (Zucchini)cpecpeB370
Cp4.1LG18g05680Cucurbita maxima (Rimu)cmacpeB038
Cp4.1LG18g05680Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g05680Cucurbita moschata (Rifu)cmocpeB013
Cp4.1LG18g05680Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g05680Cucumber (Chinese Long) v2cpecuB350
Cp4.1LG18g05680Watermelon (Charleston Gray)cpewcgB334
Cp4.1LG18g05680Watermelon (97103) v1cpewmB362
Cp4.1LG18g05680Cucumber (Gy14) v2cgybcpeB499
Cp4.1LG18g05680Melon (DHL92) v3.6.1cpemedB405
Cp4.1LG18g05680Silver-seed gourdcarcpeB0897
Cp4.1LG18g05680Cucumber (Chinese Long) v3cpecucB0460