Carg14082 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14082
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nucleoid-associated protein
Location	Cucurbita_argyrosperma_scaffold_097 : 728486 .. 732326 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGAAAATCTACTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACATTCACAGCTTTGGGCAATGGCATCGACAATTTCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTTAGTACACCATTTGAACCTTTTCATTTTCTTTTGGTTGCTTAGACAGTAGGAAATTGAGGACTATATTTGAGATTGATTGTTATGTCTCTGAATAGAAGTGGTTGTTTGGAACTTGGATCTGTATTGTATGTTACGTAGCTATCTCACAACCACTCAATCAAACGGAGGGATCTAAGTTGGTGCGGTTGGTTGGTATGGCGTAGTTCATTGGGAAGATTTACCGTTCGCTTGAAGTTTAGACCTAAAATAAAGCTATCTGGTGGTGTCCTCAGTGCATATTATTGAATGGGTTTGGCTCATTTCTTATTAGGAATTATTGTTTGCTTTGTAAAATCAAAGTAAATGTGTGATTGATGAATGGGAGATTCGATTCACATGAACTTGATGGCAGATGCGTATGTCTACAGTTTTGTATAAAGATTATGAAAGAAAAAGGATGTGGTCTGGAAAATTAACCAAGTTTGGATAAGCCTCAAAACTCTTTAGCACCAGGCTCAACTGCAAGATTATCCACCTTAAAAACTGTTCATAGAAAAGGAATTGCATGAACCAATGAGTTGTAGCCTAGACTGAAGCCGGTTGCATACCTGATAATGTGAAAGTCAGAATTGAATAAATCCCGTCTACTTCATTATAACTCTTAACAAGCTATATTAACGTTGTATGACTTAGAATTTAGTGGTTTGATTTTTATAATTTCGAATATAATACTTTGGGCAATAGAAATTTGTGTGCAGCTGCAAAGTCCTCGTTTATTTCCAAATTTTCATTCTGAAATTGTAGATTAAGTCCACTTTTTGAGACAATTGATTGTACACATTACCTATTAATATATAATTTATCCTTTTCTGGTTGCCTCTTACAGGTAACCTTAATTCAATGTCAAAAATAATTGGCACTCGAGGTCCTTGGAAAGTTGAGAAAAATAAAAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGTAGAATTTTGTTTTGCAATATGATTAAACTGTATAAGTTTTGATACCATGCACAATAAAATTGTCATTTCAGTAATTTAGAGACCAAATATAAATGTCTCTCAAAGTTGAGGGACTGTAAGTGACTTTTCCTTGATAGCCAAGTGAGACTATCGTTTCTTACATGCCAACTTTTTGTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGTATGACTAAGCAAGCTAAATAGATGTATTGTCTCTTGAAGATGTTTCTCTGTTTTATGAAGTTTGAACTTTTTCTCCTTCTGTGTTTCTGTTCTACAGGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTATGTTCAGCCTTTCTCTTTTGCATCAAGTTCATTTTCACTTTGCCCATAACTATGGGATTATAATGGTTGTTTGTGAAGTGAACGTGTGTTAGAATTTTGCTTAAGATTGTAAAATACTTTTCACCTCTTGATTTTAGGTGGCTAGTAATTAGTAAATAAGTACAGATACCTGATGCTTGTTTTTATTAATATTGCGTTTGTTGTAGGTGTTACTTAGAGGGAGAAACAGGTCTTGAGTTTGTGATTACCAATTTTTCTTTCTTGTTTTAAGATGATAAGTGAATCCAATTTTTCTTTCTTGTTTTGTGATTACCACCAATATTCAACCTGGTCGATGTGGACTTAAAATCTCTTGGGGCCATCTCCCTCAGATATTAATTGTTATAAAATATGTGTAGGATCAATTGATAGTTCCAGCGTTCATCCCCATGGTCATAGAAAATGAAGTGATTTTTTTTTTCTTGATAAGAAAAGTTTAGGGAATTTCAAAAGAGAGAATCATGATTTATGAAAATGATCAAAGAAGTATTGAGCTCGGGACAAAAGGTTATGAGTTTGACAATTGGGTTCATGCGAGGCTGGACATGGCCTTTTCATTTGATGAGAATTATGATGCTAAAGAATGGGATCATATCATGTTTCCATGTCACATCATATCTGCTTTCATATTTTTTGTCAACTAATTTAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAGTGAGTATGCACAATGATGTGATGCACTCTAACATTTGAAATTGCATTGCTCGCGATAGCATTCTTATATTGAACTTATATTTACATCCTCAAGTCACTCCTTAATGCTGCACTACCTGTCCTGTCCTCAATCTAAGCTTGGAGATATCTTCTTCAATGTTTGTGCCTAGTGGAATCATGACTAACACATCATGAATTTGAAAATTGGCTGGCCTATAGGACTAGGGTCCGCCTGCTTTGGAACATGTCTCATAAATAAATTGACAACCATCATTATATTTAAGAATATAGTTGGCAGTAACATCGTAAAAATTGTGTGCTAGGAATTTTCTTTTGTTGTTGCAGAGTAAGAAACCACACTTTCACAGAGAAATTAAAGAATATTTGGAGTATATCCTCTTCAATGTTTGTCTTGTGGAATCATGACTAACACCTCATGAGTTTGAAATTGGCTGGCCTATAGGACTAGGGTCCGCTTGCTTTGGAACATGGCTAAAATATAAGTTGACAACCATAATTATATTTAAGAATATTGTTGACAGTAAGTAACATTGTAAAAATTGTGTGCTAGGATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTGTTGGGTAAGACACCATATTGAGAGAAATTAAAGAATATTTATGGACGTATGAATAAACAGGCCCCAAGAAAAAGAACTTGACCTTAACCAAATAAATAACTCCAAAAGTTTTATTATTCCTTTCTATTCAAATATCCCACAAACTTGCAAAGAAACTAGAATGCCACAAAAATTTTCCCTTCTTTCTAAAAGGAGGATTTAGAAGTACCTCCTCCAACCGAGCCTATCCCGAGCCCAACTAACACCATTAAGATTTGTTCCAATAGTAATTAAGATTTCTGATTGTGGTTAATGATGGATATTCCAATTATTTAGAGCTTAACTTTCTTATGCAGAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGTAAGACTTGTTCCTTAGTAATTTAATTTCCAAGTTTTGTATCTATAGAACTGACTGTTGGTCCTCTGATTCTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAAAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATCTGACCTTGACAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTAAAAAAAAAAAAAAAACAGCTATGATATTTATTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAGTGAGATTTCAAATTGGAATCTACTTTAGAAGCGATATCGACTATCATTTCGGTTTGTTGAAAGGAAAAGATATTTGACAATATGTGGACATCTGATTTCTTGAAAAGAAAAAGCTTTAAACT

mRNA sequence

GGCGAAAATCTACTTTATAGTTTATCCTCTCGAGTTTCTCCTCGGCACATTCACAGCTTTGGGCAATGGCATCGACAATTTCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAAATAATTGGCACTCGAGGTCCTTGGAAAGTTGAGAAAAATAAAAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAAAACCTTTTATGTCTGTCGAGCTTCAGTTTTGTAAATGCAGCGGCAGTGGGACTACGTAATTGTAATCTGACCTTGACAGGAAATTCCATATCAGTTTTTACTGGTGAACTAAATGTTTGGGAACCTTGTTCTCCATCTTTAGATGTAAAAAAAAAAAAAAAACAGCTATGATATTTATTGTGGAATCAGAACAAAGAATCAAAAGAATGAAATGAAAGTGAGATTTCAAATTGGAATCTACTTTAGAAGCGATATCGACTATCATTTCGGTTTGTTGAAAGGAAAAGATATTTGACAATATGTGGACATCTGATTTCTTGAAAAGAAAAAGCTTTAAACT

Coding sequence (CDS)

ATGGCATCGACAATTTCAATCAGTGCTCAAGTACCAAATCTGCGAGGAATTTCTGATTGGAAAAAACGAAGTAACCTTAATTCAATGTCAAAAATAATTGGCACTCGAGGTCCTTGGAAAGTTGAGAAAAATAAAAGATCTCTTTGTGTTTGTGGCCTATTTGGAGGGAAAAAGGAGAATGAGGAGAAGAGCGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAGACTGTGAGGACAGCGCAACAGGTTGTCCAAGTAGAGGCAGTGCGCGTACAAAAGGAACTTGCGGTGGCAGAGTTTGATGGCTACTGCGAAGGAGAGCTAATAAAGGTGACATTATCCGGAAATCAGCAACCTCTTCGGACAGAGATCACTGAGGCTGCAATGAAATTAGGACCAGAAAAATTGTCCCTTCTAGTTACTGAAGCATATCAGGACGCACATCAGAAGAGCGTTCAGGCCATGAAGCAAAGAATGAGTGATCTTGCCCAGAGTTTGGGTATGCCACAAGGCCTCAGTGAGGGATTGAAGTAA

Protein sequence

MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRGPWKVEKNKRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVQAMKQRMSDLAQSLGMPQGLSEGLK

Homology

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BLAST of Carg14082 vs. NCBI nr
Match: XP_022932159.1 (nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022965200.1 nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 308.5 bits (789), Expect = 1.5e-80
Identity = 183/188 (97.34%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR    GPWKVEKN RSLCVCGLFGG
Sbjct: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYGPWKVEKNNRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180

Query: 181 XXLSEGLK 185
           XXLSEGLK
Sbjct: 181 XXLSEGLK 188

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BLAST of Carg14082 vs. NCBI nr
Match: XP_023531577.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 2.8e-79
Identity = 181/187 (96.79%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR---GPWKVEKNKRSLCVCGLFGGK 60
           MASTI+ISAQVPNLRGISDWKKRSNLNSMSKIIGTR    PWKVEKN RSLCVCGLFGGK
Sbjct: 1   MASTIAISAQVPNLRGISDWKKRSNLNSMSKIIGTRISPYPWKVEKNNRSLCVCGLFGGK 60

Query: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120
           KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK
Sbjct: 61  KENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXXX 180
           VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXXX
Sbjct: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXXX 180

Query: 181 XLSEGLK 185
           XLSEGLK
Sbjct: 181 XLSEGLK 187

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BLAST of Carg14082 vs. NCBI nr
Match: XP_023516534.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 4.7e-74
Identity = 153/188 (81.38%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTIS+SAQVPNLRGISD KKRSNLNS S I+G R    GPWKVEKN RSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSV                 
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 XXLSEGLK 185
             L EGLK
Sbjct: 181 QGLGEGLK 188

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BLAST of Carg14082 vs. NCBI nr
Match: XP_022988592.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 152/188 (80.85%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTIS+SAQVPNLRGIS  KKR+NLNSMS I+G R    GPWKVEKN RSLCVCGLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KKEN EKSDDAPSKAGIFGNMQ LYETVRTAQQVVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180
           KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAY+DAHQKSV                 
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 XXLSEGLK 185
             L EGLK
Sbjct: 181 QGLGEGLK 188

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BLAST of Carg14082 vs. NCBI nr
Match: XP_004146679.1 (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hypothetical protein Csa_1G256760 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 8.8e-73
Identity = 152/188 (80.85%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTIS+SAQ+PNLRGISD+KKRSNLNSMS I+GTR    GPWKVEKN RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSV                 
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 XXLSEGLK 185
             LSEGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Carg14082 vs. TAIR10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-43
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 44  NKRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 103
           N RSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 104 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSV 160
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSV 156

[Close]

BLAST of Carg14082 vs. TAIR10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 93/146 (63.70%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 39  WKVEKNKRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRV 98
           +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 99  QKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKS 158
           QKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 159 VXXXXXXXXXXXXXXXXXXXLSEGLK 185
           V                   LSEG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

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BLAST of Carg14082 vs. Swiss-Prot
Match: sp|Q9M098|EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.3e-42
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 44  NKRSLCVCGLF-GGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKEL 103
           N RSL V GLF GGKK+N+E   D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKEL
Sbjct: 43  NNRSLRVNGLFGGGKKDNKE---DGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKEL 102

Query: 104 AVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSV 160
           AVAEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAM+LG EKLSLLVTEAY+DAH KSV
Sbjct: 103 AVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSV 156

[Close]

BLAST of Carg14082 vs. Swiss-Prot
Match: sp|O82230|EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-41
Identity = 93/146 (63.70%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 39  WKVEKNKRSLCVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRV 98
           +K +   RSL V GLFGG  + +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRV
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNK-DNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRV 97

Query: 99  QKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKS 158
           QKELA AEFDGYC GEL+KVTLSGNQQP+RT+ITEAAM+LG EKLS LVTEAY+DAH KS
Sbjct: 98  QKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKS 157

Query: 159 VXXXXXXXXXXXXXXXXXXXLSEGLK 185
           V                   LSEG+K
Sbjct: 158 VVAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of Carg14082 vs. Swiss-Prot
Match: sp|Q5N376|Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 75  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 134
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 135 AMKLGPEKLSLLVTEAYQDAHQKS 159
           A+  G E LS LV  A +DA+QKS
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKS 93

[Close]

BLAST of Carg14082 vs. Swiss-Prot
Match: sp|Q8GMT0|Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 75  GNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEA 134
           G M++L +  + AQQ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+PLR EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 135 AMKLGPEKLSLLVTEAYQDAHQKS 159
           A+  G E LS LV  A +DA+QKS
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKS 93

[Close]

BLAST of Carg14082 vs. Swiss-Prot
Match: sp|Q8YM73|Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 77  MQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELIKVTLSGNQQPLRTEITEAAM 136
           M++L E  + AQQ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+
Sbjct: 15  MKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPDAL 74

Query: 137 KLGPEKLSLLVTEAYQDAHQKS 159
             G + LS LVT A +DA+ KS
Sbjct: 75  AQGADLLSDLVTAAMKDAYIKS 95

[Close]

BLAST of Carg14082 vs. TrEMBL
Match: tr|A0A0A0LWF8|A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 5.8e-73
Identity = 152/188 (80.85%), Postives = 160/188 (85.11%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTIS+SAQ+PNLRGISD+KKRSNLNSMS I+GTR    GPWKVEKN RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXXXXXXXXXX 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAHQKSV                 
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180

Query: 181 XXLSEGLK 185
             LSEGLK
Sbjct: 181 QGLSEGLK 187

[Close]

BLAST of Carg14082 vs. TrEMBL
Match: tr|A0A1S3B9T2|A0A1S3B9T2_CUCME (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487347 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKKRSNLNSMSKIIGTR----GPWKVEKNKRSLCVCGLFGG 60
           MASTIS+SAQ+PNLRGISD KKRSNLN MS I+GTR    GPWKVEKN RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELI
Sbjct: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAH 156
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAYQDAH
Sbjct: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAH 158

[Close]

BLAST of Carg14082 vs. TrEMBL
Match: tr|A0A067KR51|A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 2.9e-56
Identity = 123/196 (62.76%), Postives = 141/196 (71.94%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKK-------RSNLNSMSKIIGTR-----GPWKVEKNKRSL 60
           M ST ++S +V NL G++DWK+         NL+    ++G +     G WK  ++ RSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFD 120
           CV GLFGGKK+N EKSDDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA AEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXX 180
           GYCEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLLV EAY+DAHQKSV         
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 XXXXXXXXXXLSEGLK 185
                     +SEGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]

BLAST of Carg14082 vs. TrEMBL
Match: tr|A0A2K1WZ09|A0A2K1WZ09_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G105600v3 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 6.5e-56
Identity = 125/196 (63.78%), Postives = 141/196 (71.94%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKK-------RSNLNSMSKIIGTR-----GPWKVEKNKRSL 60
           MAST +++AQV NL G+ DWK+         NLN  + ++G +     G  K E+N RS 
Sbjct: 1   MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 60

Query: 61  CVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFD 120
            V GLFGGKKEN EKSDDAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELA AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSVXXXXXXXXX 180
           GYCEGELIKVTL+GNQQP+RTEITEAAM+LG EKLSLLVTEAY+DAHQKSV         
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMND 180

Query: 181 XXXXXXXXXXLSEGLK 185
                     + EGLK
Sbjct: 181 LAQSLGMPPGVGEGLK 196

[Close]

BLAST of Carg14082 vs. TrEMBL
Match: tr|A0A2P4LVA8|A0A2P4LVA8_QUESU (Nucleoid-associated protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_41186 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.4e-55
Identity = 121/171 (70.76%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MASTISISAQVPNLRGISDWKK-------RSNLNSMSKIIGTR-----GPWKVEKNKRSL 60
           MAST+S+  Q+ NL+G++DW+K         NL S S  +G +     G  K   N RSL
Sbjct: 1   MASTMSLVGQISNLQGVNDWRKPCPSSLSLCNLTSSSNSVGMQVFSRCGRRKYGHNHRSL 60

Query: 61  CVCGLFGGKKENEEKSDDAPSKAGIFGNMQKLYETVRTAQQVVQVEAVRVQKELAVAEFD 120
            VCGLFGGKKEN EKS+DAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELA AEFD
Sbjct: 61  RVCGLFGGKKENNEKSEDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYQDAHQKSV 160
           GYCEGELIKVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DA+QKS+
Sbjct: 121 GYCEGELIKVTLSGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDAYQKSL 171

The following BLAST results are available for this feature:

BLAST of Carg14082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932159.1	1.5e-80	97.34	nucleoid-associated protein At4g30620, chloroplastic-like isoform X1 [Cucurbita ...	[more]
XP_023531577.1	2.8e-79	96.79	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_023516534.1	4.7e-74	81.38	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_022988592.1	1.4e-73	80.85	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima]	[more]
XP_004146679.1	8.8e-73	80.85	PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hy...	[more]

BLAST of Carg14082 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30620.1	5.2e-43	78.63	Uncharacterised BCR, YbaB family COG0718	[more]
AT2G24020.1	2.0e-42	63.70	Uncharacterised BCR, YbaB family COG0718	[more]

BLAST of Carg14082 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M098\|EBFC1_ARATH	9.3e-42	78.63	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|O82230\|EBFC2_ARATH	3.5e-41	63.70	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q5N376\|Y1054_SYNP6	1.5e-10	47.62	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
sp\|Q8GMT0\|Y464_SYNE7	1.5e-10	47.62	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
sp\|Q8YM73\|Y5067_NOSS1	1.0e-08	47.56	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of Carg14082 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWF8\|A0A0A0LWF8_CUCSA	5.8e-73	80.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]
tr\|A0A1S3B9T2\|A0A1S3B9T2_CUCME	1.5e-68	88.68	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=365...	[more]
tr\|A0A067KR51\|A0A067KR51_JATCU	2.9e-56	62.76	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1	[more]
tr\|A0A2K1WZ09\|A0A2K1WZ09_POPTR	6.5e-56	63.78	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G105600v3 PE=...	[more]
tr\|A0A2P4LVA8\|A0A2P4LVA8_QUESU	1.4e-55	70.76	Nucleoid-associated protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_41...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004401	YbaB/EbfC
IPR036894	YbaB-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14082-RA	Carg14082-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	G3DSA:3.30.1310.10		coord: 73..181 e-value: 5.7E-20 score: 73.1
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	SSF82607	YbaB-like	coord: 89..177
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 88..173 e-value: 2.0E-16 score: 59.9
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	FAMILY NOT NAMED	coord: 1..184
None	No IPR available	PANTHER	PTHR33449:SF3	SUBFAMILY NOT NAMED	coord: 1..184

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14082	Cla018740	Watermelon (97103) v1	carwmB0507
Carg14082	Csa1G256760	Cucumber (Chinese Long) v2	carcuB0532
Carg14082	MELO3C010214	Melon (DHL92) v3.5.1	carmeB0509
Carg14082	ClCG06G012460	Watermelon (Charleston Gray)	carwcgB0496
Carg14082	CSPI01G17750	Wild cucumber (PI 183967)	carcpiB0539
Carg14082	Cucsa.093440	Cucumber (Gy14) v1	carcgyB0579
Carg14082	CmaCh10G004630	Cucurbita maxima (Rimu)	carcmaB0709
Carg14082	CmaCh11G004550	Cucurbita maxima (Rimu)	carcmaB0710
Carg14082	CmoCh11G004550	Cucurbita moschata (Rifu)	carcmoB0689
Carg14082	CmoCh10G004970	Cucurbita moschata (Rifu)	carcmoB0688
Carg14082	Lsi06G011480	Bottle gourd (USVL1VR-Ls)	carlsiB461
Carg14082	Cp4.1LG04g08680	Cucurbita pepo (Zucchini)	carcpeB0717
Carg14082	Cp4.1LG18g05680	Cucurbita pepo (Zucchini)	carcpeB0715
Carg14082	CsGy1G017930	Cucumber (Gy14) v2	carcgybB0508
Carg14082	CsGy1G016280	Cucumber (Gy14) v2	carcgybB0509
Carg14082	MELO3C010214.2	Melon (DHL92) v3.6.1	carmedB0515
Carg14082	CsaV3_1G029020	Cucumber (Chinese Long) v3	carcucB0537
Carg14082	Cla97C06G121700	Watermelon (97103) v2	carwmbB0534
Carg14082	Bhi02G000678	Wax gourd	carwgoB0620

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14082	Carg09999	Silver-seed gourd	carcarB151

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14082	Watermelon (97103) v2	carwmbB0532
Carg14082	Wax gourd	carwgoB0619
Carg14082	Silver-seed gourd	carcarB492
Carg14082	Cucumber (Gy14) v2	carcgybB0512
Carg14082	Cucumber (Gy14) v1	carcgyB0584
Carg14082	Cucurbita maxima (Rimu)	carcmaB0708
Carg14082	Cucurbita maxima (Rimu)	carcmaB0715
Carg14082	Cucurbita moschata (Rifu)	carcmoB0687
Carg14082	Cucurbita pepo (Zucchini)	carcpeB0716
Carg14082	Cucurbita pepo (Zucchini)	carcpeB0719
Carg14082	Wild cucumber (PI 183967)	carcpiB0541
Carg14082	Cucumber (Chinese Long) v2	carcuB0531
Carg14082	Cucumber (Chinese Long) v2	carcuB0534
Carg14082	Cucumber (Chinese Long) v3	carcucB0540
Carg14082	Melon (DHL92) v3.5.1	carmeB0514
Carg14082	Melon (DHL92) v3.6.1	carmedB0520
Carg14082	Watermelon (Charleston Gray)	carwcgB0494
Carg14082	Watermelon (97103) v1	carwmB0502