CsGy1G017930 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G017930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	nucleoid-associated protein At2g24020, chloroplastic-like
Location	Chr1 : 16054805 .. 16057978 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGTTAGTCCCATTCTTCAACTCTTTCTCTCTTTTCATTTTCTTCTGTTTGCTCATACCTTAGGAATTTGAGTTTTTTCGATCCATTGCGAATTGCTGTATCTCTGGATTTAATTCCTTGCTTGGGACTTACTTCTCTATTGTATAGTTTGTACCTATTTCTTAACCACTCAATCTAACGGTGGGATCTAAGTTGGTGCGGGTGGTTAGTTTGGCGTAGATTGGGAAGATTTGCCAATCGGTTGAAGTTTAGACCCTAAATAGAATTGTCTGGCGGCGGTGTCCTTAGTTCTTATTACTGGATGGGTTATGTTCATTTCTATTCAATAAATTATTGTTTTTTCGTAGAATTATAGTAAAATTGTGATAGGTGAGTGGGGGAGATTCTCTTGATTTGAGCATGTAGGCAGATGAGTCTTGTATAATCCATTGAACTTAAAAGAGAAAGACTGTGTTCTGGGTAATTTACTTGAAAACTATTCAATAAGTTTGGATAGACCTCAAAACTTTTTAACTAACTTAGATGCGAGTAGTGTTTTAATAAATTTGATTTTTTTGTAGTTAATAAAGAAGGACAAGCCCTTATTATTACTATTTTCTTAAAATAATACAAAAGCCTCACAGCCCAGAGGAGGCATGCCTTATTTTGTGAACCTATCTTTCTTTTAAGGCGAGGTGCCTTTTAAACCACTGGTTGTGAGGGTAATTTCGTGGAACACAGTTTATTGAGAAGGAATGGCATGAACCAGTCAAGTTTAATTCTTAATTTCTAATATGGACTGAAGATGGTTGCATATCTGATAATGCCAATGTGAGAACTGAACAAATCCCATGTCTGCTTCATGAGAACTCTTTAACAAACTAGATAGATACATCAAAAGAAACAGGGCTGGTTCCAAATGACTTTTTAAGTGCTAAAACAAGCGTTTTCAATTGTACAAACAGAGTGTTTTTAAGTACTCAGGAAGTCATTCCAAACAGAACCTTAGCTGTGTAGGACTGTTTTAGAATTTAGTGTTTTCTTTTCTGTATTTTGCAATTTGAATATAATACTTTGGAGTTTGGACGATAGAAATTTCCAATTTTCCATTCTGAAATTGGAGACAAATTCCACTCTTTGTGAAATTTGATTGTACACAAAACACTTATTAATGCATGTTATGCTTTTCTGTCTGGCTCTTACAGGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGTAGAACTTTTATCTGCAATATGATTAAAGACATCATAACTTTTGATATCATGCTCAATAAAATTGTCATTTTCAGTAATTTAGATATCAAACAGAAATGTTTATCATATTTGAGAGACTGAAAGTGACTTTTGTTTGCAAGTGAGGTGAGACCATCGTTACTTACATGCTAACTTTTTTTAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGTAAGACCAAACAAGTTAAATAAATGTATTGCCACTTGGAGATGTCTTTCTGTAATTTACGAAGTTGTTTGAATTTTTTTTTTTCCCTTCCATGTTTCTGTTTTCCAGGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTATGTCCCGCCTTCCTCTCTTGCATCAAGTTCATTTTCACTTTGCCGAGAACTATACGATAAAAGAGGTTGTTAGAGAAGTGAGCGTGTGTTACATTTTTGCTTACAATTGTAAATATGTTTTCCATCTTGATTTTAGGGTACTAGTAAATATGAACGGATTCTAGAGGAATGACTTGAATTTATCTTGGGTACTACTTAAAAAGGATGCCAGGTCTAGAGCTTGTGATTACTTATCTTTCTATGTCGTTTTAAGATGATAAGTATATCCAATTTCTTGAATAACCGAGTTGTATTGGAATTAAAATCTCTTGGGGCCATCTCCCTGAGATGTTGATTGTTATAAAATATTTTTGTTGCATCAATCGACAGTGTTCCAGTGTTGATTCCCATGGACATGGAAAGTCCAGCGAATTTTAAAAAAGTGAAGTTCACGATTTATCAAAAGAATTAAATAAGCATTGAGCTTGCGACAGAAGGTTATGGATTTGACAATTGGTTTCATACAAGGCTAGGATAGGCTTTTCATTTAATGAAAATATTATATAAAAGAATGGGTTCATATCATGTTGAATATCACCGCGTATCTACCCTAATATTTTTCTGTCGACTAATATAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAGTGAGTATGCACAATGCTGTAGACTGTAATGCACTCTAACATTTAGCATTTTTACATTGAACTTCTATTTACATCCACTCAAAGTCACAACTTAATGCTGCACCACCTGTCATGTCCTCAATGCAAGCTTGGAGTATATCTTCTCTTGGTGCTAGGTGGAATAATGACTTTTCACTCCACGTGAGTTTGAAAATTGGCTGGCTACAGGAATAAGACCCGCCAACATTGGCACATGGCTCAAAAAAGTTTGACAAGTTGACAACCATACTTGAATATTTTAAGAATAGTTACCAGTAACATTTGTAAAAGTTATGGTCCCTAGAATATTTCTTGAATGGGTGTTTTCCATTGTGAAATAGGTCATTAAAATTTCTGAACGTGGTTAATGATGGATTTCATATTCCAAAAAAGAAATATTCTGATCTTTACTTTCTTATGCAGAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGTAAGAATTCTTCCAATAGTAATTTAATTACCAAGTTTTGTTTCTTCCGAACTGACTGTTGACTCTATGATTCTCAGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

mRNA sequence

ATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Coding sequence (CDS)

ATGGCGTCGACGATATCTCTGAGTGCTCAGCTGCCAAATCTCCGAGGAATTTCTGATTTCAAGAAACGAAGCAACTTAAATTCAATGTCAAATATAGTTGGTACGCGACTTTCACCTTATGGTCCTTGGAAAGTTGAGAAAAATAATAGATCTCTTTGTGTTTATGGTCTATTTGGAGGAAAAAAGGATGAGGAGAAGAGTGATGATGCACCTTCAAAGGCAGGAATCTTTGGAAACATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGTTGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTATTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGACCAGAAAAACTTTCCCTTCTAGTTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGATCTTGCCCAGAGCTTAGGCATGCCCCAGGGACTCAGTGAGGGATTAAAGTAG

Protein sequence

MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQGLSEGLK

Homology

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BLAST of CsGy1G017930 vs. NCBI nr
Match: XP_004146679.1 (PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hypothetical protein Csa_1G256760 [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 1.2e-96
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

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BLAST of CsGy1G017930 vs. NCBI nr
Match: XP_022921745.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 2.2e-87
Identity = 170/187 (90.91%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISD KKRSNLNSMSNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KK+  + DDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKENGEKDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GL EGLK
Sbjct: 181 GLGEGLK 187

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BLAST of CsGy1G017930 vs. NCBI nr
Match: XP_023516534.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 1.1e-86
Identity = 171/188 (90.96%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQ+PNLRGISD KKRSNLNS SNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQVPNLRGISDLKKRSNLNSKSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 188
           QGL EGLK
Sbjct: 181 QGLGEGLK 188

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BLAST of CsGy1G017930 vs. NCBI nr
Match: XP_022988592.1 (nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 327.4 bits (838), Expect = 3.2e-86
Identity = 170/188 (90.43%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQ+PNLRGIS  KKR+NLNSMSNIVG R+SPYGPWKVEKN+RSLCV GLFGG
Sbjct: 1   MASTISLSAQVPNLRGISGLKKRNNLNSMSNIVGARISPYGPWKVEKNSRSLCVCGLFGG 60

Query: 61  KKDE-EKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+  EKSDDAPSKAGIFGNMQ LYETVRTAQ+VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENGEKSDDAPSKAGIFGNMQNLYETVRTAQQVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMKQRMSDLAQSLGMP
Sbjct: 121 KVTLSGNQQPLRTEITEAAMKLGPEKLSLLVTEAYRDAHQKSVQAMKQRMSDLAQSLGMP 180

Query: 181 QGLSEGLK 188
           QGL EGLK
Sbjct: 181 QGLGEGLK 188

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BLAST of CsGy1G017930 vs. NCBI nr
Match: XP_022135106.1 (nucleoid-associated protein At4g30620, chloroplastic-like [Momordica charantia])

HSP 1 Score: 317.8 bits (813), Expect = 2.5e-83
Identity = 164/188 (87.23%), Postives = 177/188 (94.15%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPN+RGISD+K+RSNLNSMSNIVG R++ +GPWKV KNNRS CVYGLFG 
Sbjct: 1   MASTISLSAQLPNMRGISDWKQRSNLNSMSNIVGVRITSHGPWKVHKNNRSFCVYGLFGK 60

Query: 61  KKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELI 120
           KK+ EEKSDDAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFDGYCEGELI
Sbjct: 61  KKENEEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELI 120

Query: 121 KVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           KVTLSGNQQP+RTEITEAAM+LGPEKLSLLVTEAY+DAHQKSV AMK RM+DLAQSLGMP
Sbjct: 121 KVTLSGNQQPVRTEITEAAMKLGPEKLSLLVTEAYKDAHQKSVQAMKLRMNDLAQSLGMP 180

Query: 181 QGLSEGLK 188
           QGL+EGLK
Sbjct: 181 QGLNEGLK 188

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BLAST of CsGy1G017930 vs. TAIR10
Match: AT2G24020.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 214.2 bits (544), Expect = 7.1e-56
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 LAMKQRMSDLAQSLGMPQGLSEGLK 188
           +AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of CsGy1G017930 vs. TAIR10
Match: AT4G30620.1 (Uncharacterised BCR, YbaB family COG0718)

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-54
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSVLAMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

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BLAST of CsGy1G017930 vs. Swiss-Prot
Match: sp|O82230|EBFC2_ARATH (Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=STIC2 PE=1 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 0


Query: 43  WKVEKNNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQ 102
           +K +   RSL V GLFGG   +  S+D  SKAGIFGNMQ +YETV+ AQ VVQVEAVRVQ
Sbjct: 38  YKSKNGYRSLRVNGLFGGGNKDNNSEDGQSKAGIFGNMQNMYETVKKAQMVVQVEAVRVQ 97

Query: 103 KELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSV 162
           KELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG EKLS LVTEAY+DAH KSV
Sbjct: 98  KELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSEKLSQLVTEAYKDAHAKSV 157

Query: 163 LAMKQRMSDLAQSLGMPQGLSEGLK 188
           +AMK+RMSDLAQSLGMP GLSEG+K
Sbjct: 158 VAMKERMSDLAQSLGMPPGLSEGMK 182

[Close]

BLAST of CsGy1G017930 vs. Swiss-Prot
Match: sp|Q9M098|EBFC1_ARATH (Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30620 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-53
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 48  NNRSLCVYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAA 107
           NNRSL V GLFGG K + K +D  SKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELA 
Sbjct: 43  NNRSLRVNGLFGGGKKDNK-EDGQSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAV 102

Query: 108 AEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQ 167
           AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG EKLSLLVTEAY+DAH KSVLAMK+
Sbjct: 103 AEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSEKLSLLVTEAYKDAHSKSVLAMKE 162

Query: 168 RMSDLAQSLGMPQGLSEGLK 188
           RMSDLAQSLGMP GL +GLK
Sbjct: 163 RMSDLAQSLGMPPGL-DGLK 180

[Close]

BLAST of CsGy1G017930 vs. Swiss-Prot
Match: sp|Q5N376|Y1054_SYNP6 (Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=syc1054_d PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of CsGy1G017930 vs. Swiss-Prot
Match: sp|Q8GMT0|Y464_SYNE7 (Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=Synpcc7942_0464 PE=3 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-14
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 78  GNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEA 137
           G M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   
Sbjct: 11  GKMKELADAFKKAQQ-VQEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAPE 70

Query: 138 AMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
           A+  G E LS LV  A +DA+QKS  AMK++M  L   LG+P
Sbjct: 71  ALNEGAEVLSELVAAAMKDAYQKSTAAMKEKMEALTAGLGIP 111

[Close]

BLAST of CsGy1G017930 vs. Swiss-Prot
Match: sp|Q8YM73|Y5067_NOSS1 (Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr5067 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 80  MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAM 139
           M++L E  + AQ+ VQ  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+  A+
Sbjct: 15  MKELAEAFKKAQQ-VQEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISPDAL 74

Query: 140 ELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMP 180
             G + LS LVT A +DA+ KS   M++RM DL   L +P
Sbjct: 75  AQGADLLSDLVTAAMKDAYIKSTATMRERMEDLTSGLELP 113

[Close]

BLAST of CsGy1G017930 vs. TrEMBL
Match: tr|A0A0A0LWF8|A0A0A0LWF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 7.7e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQSLGMPQ 180

Query: 181 GLSEGLK 188
           GLSEGLK
Sbjct: 181 GLSEGLK 187

[Close]

BLAST of CsGy1G017930 vs. TrEMBL
Match: tr|A0A1S3B9T2|A0A1S3B9T2_CUCME (nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487347 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 6.5e-80
Identity = 156/158 (98.73%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60
           MASTISLSAQLPNLRGISD KKRSNLN MSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG
Sbjct: 1   MASTISLSAQLPNLRGISDLKKRSNLNLMSNIVGTRLSPYGPWKVEKNNRSLCVYGLFGG 60

Query: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120
           KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK
Sbjct: 61  KKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIK 120

Query: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAH 159
           VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAH
Sbjct: 121 VTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAH 158

[Close]

BLAST of CsGy1G017930 vs. TrEMBL
Match: tr|A0A067KR51|A0A067KR51_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.4e-66
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKK-------RSNLNSMSNIVGTRL-SPYGPWKVEKNNRSL 60
           M ST ++S ++ NL G++D+K+         NL+   N+VG +L S  G WK  +++RSL
Sbjct: 1   MVSTSAVSPRVSNLSGLADWKRPRLSSFHLGNLSLNPNVVGKQLISQSGHWKSGRSSRSL 60

Query: 61  CVYGLFGGKKD-EEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFD 120
           CV+GLFGGKKD  EKSDDAPSKAGI GNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFD
Sbjct: 61  CVHGLFGGKKDNNEKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSD 180
           GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLV EAY+DAHQKSV AMK+RMS+
Sbjct: 121 GYCEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVNEAYKDAHQKSVQAMKERMSN 180

Query: 181 LAQSLGMPQGLSEGLK 188
           LAQSLGMP G+SEGLK
Sbjct: 181 LAQSLGMPPGMSEGLK 196

[Close]

BLAST of CsGy1G017930 vs. TrEMBL
Match: tr|A0A2I4F9R0|A0A2I4F9R0_9ROSI (nucleoid-associated protein At4g30620, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108996811 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 4.5e-65
Identity = 140/194 (72.16%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MASTISLSAQLPNLRGISDFKKRSNLNSMSNIVGT-------RLSPYGPWKVEKNNRSLC 60
           MASTISL+ Q+P+LRG++D++K  + +S+ N+           LS     K     RSL 
Sbjct: 1   MASTISLTGQMPSLRGVNDWRKPFSSHSLCNLTSNANSVDLQMLSQARQGKYGHKGRSLR 60

Query: 61  VYGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGY 120
           VYGLFGGKKD EKS+DAPSKAGI GNMQ L+ETV+ AQ VVQVEAVRVQKELAAAEFDGY
Sbjct: 61  VYGLFGGKKD-EKSEDAPSKAGILGNMQNLFETVKKAQMVVQVEAVRVQKELAAAEFDGY 120

Query: 121 CEGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLA 180
           CEGELIKVTL+GNQQP+RTEITEAAMELGPEKLSLLVTEAY+DAHQKSV AMK+RMSDLA
Sbjct: 121 CEGELIKVTLTGNQQPVRTEITEAAMELGPEKLSLLVTEAYKDAHQKSVQAMKERMSDLA 180

Query: 181 QSLGMPQGLSEGLK 188
           QSLGMP G  EGLK
Sbjct: 181 QSLGMPPGAGEGLK 193

[Close]

BLAST of CsGy1G017930 vs. TrEMBL
Match: tr|A0A2R6QZB5|A0A2R6QZB5_ACTCH (Nucleoid-associated protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12409 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.9e-65
Identity = 139/193 (72.02%), Postives = 156/193 (80.83%), Query Frame = 0


Query: 2   ASTISLSAQLPNLRGISDFKKRSN-------LNSMSNIVGTRLSPYGPWKVEKNNRSLCV 61
           AST +L+ QL N  G+ D +  S+       LNS +N VG  +  +   K+ K  RSL +
Sbjct: 3   ASTSALAGQLSNCYGLIDRRNPSSSSFSFCKLNSYTNQVGPSIVSWPAGKIGKTQRSLRI 62

Query: 62  YGLFGGKKDEEKSDDAPSKAGIFGNMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYC 121
           YGLFGGKK+  +SDDAPSKAGIFGNMQ LYETV+ AQ VVQVEAVRVQKELAAAEFDGYC
Sbjct: 63  YGLFGGKKENNESDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYC 122

Query: 122 EGELIKVTLSGNQQPIRTEITEAAMELGPEKLSLLVTEAYQDAHQKSVLAMKQRMSDLAQ 181
           EGELIKVTLSGNQQP+RTEITEAAMELG EKLSLLVTEAY+DAHQKSV AMK+RMS+LAQ
Sbjct: 123 EGELIKVTLSGNQQPVRTEITEAAMELGAEKLSLLVTEAYKDAHQKSVQAMKERMSNLAQ 182

Query: 182 SLGMPQGLSEGLK 188
           SLGMPQGL EGLK
Sbjct: 183 SLGMPQGLGEGLK 195

The following BLAST results are available for this feature:

BLAST of CsGy1G017930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146679.1	1.2e-96	100.00	PREDICTED: uncharacterized protein LOC101209466 [Cucumis sativus] >KGN65167.1 hy...	[more]
XP_022921745.1	2.2e-87	90.91	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita moschata]	[more]
XP_023516534.1	1.1e-86	90.96	nucleoid-associated protein At4g30620, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_022988592.1	3.2e-86	90.43	nucleoid-associated protein At2g24020, chloroplastic-like [Cucurbita maxima]	[more]
XP_022135106.1	2.5e-83	87.23	nucleoid-associated protein At4g30620, chloroplastic-like [Momordica charantia]	[more]

BLAST of CsGy1G017930 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24020.1	7.1e-56	77.24	Uncharacterised BCR, YbaB family COG0718	[more]
AT4G30620.1	2.3e-54	80.71	Uncharacterised BCR, YbaB family COG0718	[more]

BLAST of CsGy1G017930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82230\|EBFC2_ARATH	1.3e-54	77.24	Nucleoid-associated protein At2g24020, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9M098\|EBFC1_ARATH	4.1e-53	80.71	Nucleoid-associated protein At4g30620, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q5N376\|Y1054_SYNP6	2.9e-14	45.10	Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / ...	[more]
sp\|Q8GMT0\|Y464_SYNE7	2.9e-14	45.10	Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain P...	[more]
sp\|Q8YM73\|Y5067_NOSS1	2.7e-12	45.00	Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 /...	[more]

BLAST of CsGy1G017930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWF8\|A0A0A0LWF8_CUCSA	7.7e-97	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256760 PE=4 SV=1	[more]
tr\|A0A1S3B9T2\|A0A1S3B9T2_CUCME	6.5e-80	98.73	nucleoid-associated protein At2g24020, chloroplastic-like OS=Cucumis melo OX=365...	[more]
tr\|A0A067KR51\|A0A067KR51_JATCU	1.4e-66	72.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04044 PE=4 SV=1	[more]
tr\|A0A2I4F9R0\|A0A2I4F9R0_9ROSI	4.5e-65	72.16	nucleoid-associated protein At4g30620, chloroplastic-like OS=Juglans regia OX=51...	[more]
tr\|A0A2R6QZB5\|A0A2R6QZB5_ACTCH	5.9e-65	72.02	Nucleoid-associated protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004401	YbaB/EbfC
IPR036894	YbaB-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017930.1	CsGy1G017930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	GENE3D	G3DSA:3.30.1310.10		coord: 76..184 e-value: 7.4E-20 score: 72.8
IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	SUPERFAMILY	SSF82607	YbaB-like	coord: 92..180
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PFAM	PF02575	YbaB_DNA_bd	coord: 90..176 e-value: 6.6E-16 score: 58.2
IPR004401	Nucleoid-associated protein YbaB/EbfC family	PANTHER	PTHR33449	FAMILY NOT NAMED	coord: 1..187
None	No IPR available	PANTHER	PTHR33449:SF3	SUBFAMILY NOT NAMED	coord: 1..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G017930	Cla018740	Watermelon (97103) v1	cgybwmB079
CsGy1G017930	Csa1G256760	Cucumber (Chinese Long) v2	cgybcuB006
CsGy1G017930	MELO3C010214	Melon (DHL92) v3.5.1	cgybmeB049
CsGy1G017930	ClCG06G012460	Watermelon (Charleston Gray)	cgybwcgB063
CsGy1G017930	CSPI01G17750	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G017930	CmaCh11G004550	Cucurbita maxima (Rimu)	cgybcmaB039
CsGy1G017930	CmoCh11G004550	Cucurbita moschata (Rifu)	cgybcmoB037
CsGy1G017930	Lsi06G011480	Bottle gourd (USVL1VR-Ls)	cgyblsiB071
CsGy1G017930	Cp4.1LG18g05680	Cucurbita pepo (Zucchini)	cgybcpeB040
CsGy1G017930	Cp4.1LG04g08680	Cucurbita pepo (Zucchini)	cgybcpeB109
CsGy1G017930	MELO3C010214.2	Melon (DHL92) v3.6.1	cgybmedB045
CsGy1G017930	CsaV3_1G029020	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G017930	Cla97C06G121700	Watermelon (97103) v2	cgybwmbB063
CsGy1G017930	Bhi02G000678	Wax gourd	cgybwgoB093
CsGy1G017930	Carg14082	Silver-seed gourd	carcgybB0508
CsGy1G017930	Carg09999	Silver-seed gourd	carcgybB0132

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsGy1G017930	CsGy1G016280	Cucumber (Gy14) v2	cgybcgybB003

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G017930	Watermelon (97103) v2	cgybwmbB060
CsGy1G017930	Wax gourd	cgybwgoB072
CsGy1G017930	Cucumber (Gy14) v2	cgybcgybB026
CsGy1G017930	Cucurbita maxima (Rimu)	cgybcmaB003
CsGy1G017930	Cucurbita maxima (Rimu)	cgybcmaB014
CsGy1G017930	Cucurbita maxima (Rimu)	cgybcmaB109
CsGy1G017930	Cucurbita moschata (Rifu)	cgybcmoB004
CsGy1G017930	Cucurbita moschata (Rifu)	cgybcmoB014
CsGy1G017930	Cucurbita pepo (Zucchini)	cgybcpeB104
CsGy1G017930	Cucurbita pepo (Zucchini)	cgybcpeB141
CsGy1G017930	Cucumber (Chinese Long) v2	cgybcuB030
CsGy1G017930	Bottle gourd (USVL1VR-Ls)	cgyblsiB060
CsGy1G017930	Melon (DHL92) v3.5.1	cgybmeB072
CsGy1G017930	Melon (DHL92) v3.6.1	cgybmedB068
CsGy1G017930	Watermelon (Charleston Gray)	cgybwcgB061
CsGy1G017930	Watermelon (97103) v1	cgybwmB039
CsGy1G017930	Wild cucumber (PI 183967)	cgybcpiB027
CsGy1G017930	Cucumber (Chinese Long) v3	cgybcucB035