Lsi06G008060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G008060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Calcium-binding EF hand family protein
Location	chr06 : 16872415 .. 16872804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAATTTCATCAATGACACAAAGATATTTGACGATTGCATCAAGGAAAGTTTTAAGAAGCTTGACACAGACAATGATGGGGTCCTCAATGTGAATGAACTTCGAGTCGGGTTTCGAGGTCAGCCATTAGAATTCGAATTAATGGATCCTGTGGATGATCTATCTGAGGTTGTTTGTCATAAGTTTCATGTGGAGAAAAATGGTGGGATTGATGAAAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCTCATGGGATTGGAAACTTTCCTCTCCAAGTTGCACTTCAACAAGATAGTTTTCTCATGAAGGCTGTTGAACATGAAAAGGCCAAAGAACAAAAATAG

mRNA sequence

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAATTTCATCAATGACACAAAGATATTTGACGATTGCATCAAGGAAAGTTTTAAGAAGCTTGACACAGACAATGATGGGGTCCTCAATGTGAATGAACTTCGAGTCGGGTTTCGAGGTCAGCCATTAGAATTCGAATTAATGGATCCTGTGGATGATCTATCTGAGGTTGTTTGTCATAAGTTTCATGTGGAGAAAAATGGTGGGATTGATGAAAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCTCATGGGATTGGAAACTTTCCTCTCCAAGTTGCACTTCAACAAGATAGTTTTCTCATGAAGGCTGTTGAACATGAAAAGGCCAAAGAACAAAAATAG

Coding sequence (CDS)

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAATTTCATCAATGACACAAAGATATTTGACGATTGCATCAAGGAAAGTTTTAAGAAGCTTGACACAGACAATGATGGGGTCCTCAATGTGAATGAACTTCGAGTCGGGTTTCGAGGTCAGCCATTAGAATTCGAATTAATGGATCCTGTGGATGATCTATCTGAGGTTGTTTGTCATAAGTTTCATGTGGAGAAAAATGGTGGGATTGATGAAAAAGAGTTTAAGTCTGTAATAAGGGACATTCTTCTTGCCATGGCTCATGGGATTGGAAACTTTCCTCTCCAAGTTGCACTTCAACAAGATAGTTTTCTCATGAAGGCTGTTGAACATGAAAAGGCCAAAGAACAAAAATAG

Protein sequence

MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLMKAVEHEKAKEQK

Homology

[Close]

BLAST of Lsi06G008060 vs. TrEMBL
Match: A0A0A0LYD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.2e-60
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLDTDNDG LN+NELRVGFR  PLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKF VEK+GGIDE+EFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 EHEKAKEQK 130
           E EKA+EQK
Sbjct: 121 ELEKAREQK 129

[Close]

BLAST of Lsi06G008060 vs. TrEMBL
Match: B9MZG7_POPTR (Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0005s05150g PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF---RGQPLEFE 60
           MS+A +N+TTVT F+ D K F++C+KE F+ LD D DGVL+ +ELR GF        E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  ++NG ID +EFK +IR+++ AM  G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVEHE 124
           KAVEHE
Sbjct: 121 KAVEHE 126

[Close]

BLAST of Lsi06G008060 vs. TrEMBL
Match: W9QVC9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006174 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 64/128 (50.00%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF-RGQPLEFELM 60
           M +A LN++TVT FI D + FD CI +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  ++NG ID +EFKS+ ++++LAMA GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVEHE 124
           LM+AVEHE
Sbjct: 121 LMRAVEHE 127

[Close]

BLAST of Lsi06G008060 vs. TrEMBL
Match: A0A068ULR0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027520001 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-20
Identity = 52/126 (41.27%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNEL--RVG-FRGQPLEFE 60
           MSV F++   +T F+ND+  F + + E F +LD D DGVL+ +EL  R G F  +  E +
Sbjct: 1   MSVVFVDGPVITKFVNDSGAFTEFVDEHFNRLDADGDGVLSRDELQKRFGRFSSRGFELQ 60

Query: 61  LMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLM 120
             + + +L  V+  KF V++NG ID +EF+S++++I++A A  IGN P+ + LQ+DS LM
Sbjct: 61  SQEEIGNLYNVLFEKFDVDQNGTIDREEFRSLMKEIMVAKARAIGNSPVPIILQEDSLLM 120

Query: 121 KAVEHE 124
           +AV+H+
Sbjct: 121 RAVQHK 126

[Close]

BLAST of Lsi06G008060 vs. TrEMBL
Match: B9RES5_RICCO (Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1428190 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-19
Identity = 52/129 (40.31%), Postives = 86/129 (66.67%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF-RGQPLEFEL- 60
           M++A +N  TV  F+ D+  F+ C+KE F  LD + DGV++ +EL  GF +   LE  L 
Sbjct: 1   MTLAVINGPTVVEFVEDSNTFEICVKECFGMLDVNGDGVISKDELCDGFYKLMSLECGLH 60

Query: 61  -MDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLM 120
               +++L + +  +F  +KNG I++++F+S++R+++ AMA GIGN P+ +AL  +S +M
Sbjct: 61  PKQEINNLYDAIFERFDEDKNGSINKQQFRSLMRELMFAMARGIGNSPILMALDTESMMM 120

Query: 121 KAVEHEKAK 127
           KAVEHE +K
Sbjct: 121 KAVEHEHSK 129

[Close]

BLAST of Lsi06G008060 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 46/139 (33.09%), Postives = 82/139 (58.99%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPL-----E 60
           M V  ++ +TV +F++D + F   + E F  LD + DGVL+ +ELR  F    L      
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  FELMDPVDDLSEV---VCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVAL-- 120
            +++ P D+L+ +   +  KF  +++G +D +EF+S ++ I+LA+A G+G+ P+ + L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 QQDSFLMKAVEHEKAKEQK 130
             D+FL KA + E +K +K
Sbjct: 121 DDDNFLKKAADLEASKLEK 139

[Close]

BLAST of Lsi06G008060 vs. TAIR10
Match: AT1G54530.1 (AT1G54530.1 Calcium-binding EF hand family protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 1


Query: 6   LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQ-PLEFELM--DPV 65
           +   T+  F++DTK F+    + F+ LD D +G+L+ +ELR G      +E E+   D  
Sbjct: 6   ITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAPGDET 65

Query: 66  DDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLMKAVEH 124
           D++   +  +F  +    +  K F+ +I +IL AMA GIGN P+ + +  D  +MKAV H
Sbjct: 66  DNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLIMKAVLH 122

[Close]

BLAST of Lsi06G008060 vs. TAIR10
Match: AT4G38810.2 (AT4G38810.2 Calcium-binding EF-hand family protein)

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-08
Identity = 35/114 (30.70%), Postives = 58/114 (50.88%), Query Frame = 1


Query: 6   LNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFR------GQPLEFELM 65
           L+ + +   + + K+FD  +++ F++LD D DG L+V EL+          G P +    
Sbjct: 15  LDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGTSP 74

Query: 66  DPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQD 114
           D  D +   V ++F       + + EFK V+ DILL MA G+   P+ V L+ D
Sbjct: 75  DS-DHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI-VILRMD 126

[Close]

BLAST of Lsi06G008060 vs. NCBI nr
Match: gi|449449633|ref|XP_004142569.1| (PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 8.9e-60
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLDTDNDG LN+NELRVGFR  PLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKF VEK+GGIDE+EFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 EHEKAKEQK 130
           E EKA+EQK
Sbjct: 121 ELEKAREQK 129

[Close]

BLAST of Lsi06G008060 vs. NCBI nr
Match: gi|659125605|ref|XP_008462771.1| (PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 5.4e-57
Identity = 116/129 (89.92%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGFRGQPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDC+KESFKKLD DNDG LN NELR GF  QPLE ELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDRDNDGFLNKNELRNGFGSQPLELELMD 60

Query: 61  PVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLMKAV 120
           PVDDL EVVCHKF+VEK+GGIDEKEFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLCEVVCHKFNVEKSGGIDEKEFKSVIRDILLAMALGIGNFPLQVALQQDSFLMKAV 120

Query: 121 EHEKAKEQK 130
           E EKAKEQK
Sbjct: 121 ELEKAKEQK 129

[Close]

BLAST of Lsi06G008060 vs. NCBI nr
Match: gi|703076147|ref|XP_010090267.1| (hypothetical protein L484_006174 [Morus notabilis])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 64/128 (50.00%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF-RGQPLEFELM 60
           M +A LN++TVT FI D + FD CI +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  ++NG ID +EFKS+ ++++LAMA GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVEHE 124
           LM+AVEHE
Sbjct: 121 LMRAVEHE 127

[Close]

BLAST of Lsi06G008060 vs. NCBI nr
Match: gi|566169581|ref|XP_006382759.1| (calcium-binding EF hand family protein [Populus trichocarpa])

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-24
Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF---RGQPLEFE 60
           MS+A +N+TTVT F+ D K F++C+KE F+ LD D DGVL+ +ELR GF        E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  ++NG ID +EFK +IR+++ AM  G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVEHE 124
           KAVEHE
Sbjct: 121 KAVEHE 126

[Close]

BLAST of Lsi06G008060 vs. NCBI nr
Match: gi|743866448|ref|XP_011032468.1| (PREDICTED: uncharacterized protein LOC105131264 [Populus euphratica])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-23
Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 1   MSVAFLNDTTVTNFINDTKIFDDCIKESFKKLDTDNDGVLNVNELRVGF---RGQPLEFE 60
           MS+A +N+TTVT F+ D K F++C+KE F+ LD D DGVL+ +ELR GF        E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKNGGIDEKEFKSVIRDILLAMAHGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  ++NG ID  EFK +IR+++ AM  G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPHEFKCLIRELMSAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVEHE 124
           KAVEHE
Sbjct: 121 KAVEHE 126

The following BLAST results are available for this feature:

BLAST of Lsi06G008060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G008060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYD8_CUCSA	6.2e-60	91.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1	[more]
B9MZG7_POPTR	1.9e-24	47.62	Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0005s0515...	[more]
W9QVC9_9ROSA	1.9e-24	50.00	Uncharacterized protein OS=Morus notabilis GN=L484_006174 PE=4 SV=1	[more]
A0A068ULR0_COFCA	4.8e-20	41.27	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027520001 PE=4 SV=1	[more]
B9RES5_RICCO	1.8e-19	40.31	Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1428190 PE=4 S...	[more]

BLAST of Lsi06G008060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44310.1	1.1e-15	33.09	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	1.9e-12	33.88	Calcium-binding EF hand family protein	[more]
AT4G38810.2	8.4e-08	30.70	Calcium-binding EF-hand family protein	[more]

BLAST of Lsi06G008060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449633\|ref\|XP_004142569.1\|	8.9e-60	91.47	PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus]	[more]
gi\|659125605\|ref\|XP_008462771.1\|	5.4e-57	89.92	PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo]	[more]
gi\|703076147\|ref\|XP_010090267.1\|	2.7e-24	50.00	hypothetical protein L484_006174 [Morus notabilis]	[more]
gi\|566169581\|ref\|XP_006382759.1\|	2.7e-24	47.62	calcium-binding EF hand family protein [Populus trichocarpa]	[more]
gi\|743866448\|ref\|XP_011032468.1\|	1.0e-23	47.62	PREDICTED: uncharacterized protein LOC105131264 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055074	calcium ion homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005432	calcium:sodium antiporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G008060.1	Lsi06G008060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 score: 0.0064coord: 65..93 score:
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 77..96 score: 6.284coord: 20..55 score: 11
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 25..94 score: 1.
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 25..94 score: 3.78
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 1..102 score: 3.0
None	No IPR available	PANTHER	PTHR10891:SF597	SUBFAMILY NOT NAMED	coord: 1..102 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G008060	Csa1G695380	Cucumber (Chinese Long) v2	culsiB058
Lsi06G008060	CSPI01G33770	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G008060	Cucsa.332270	Cucumber (Gy14) v1	cgylsiB540
Lsi06G008060	Cla003752	Watermelon (97103) v1	lsiwmB418
Lsi06G008060	MELO3C024676	Melon (DHL92) v3.5.1	lsimeB401
Lsi06G008060	ClCG06G009130	Watermelon (Charleston Gray)	lsiwcgB377
Lsi06G008060	MELO3C024676.2	Melon (DHL92) v3.6.1	lsimedB424
Lsi06G008060	Cla97C06G118920	Watermelon (97103) v2	lsiwmbB378
Lsi06G008060	Bhi02G001014	Wax gourd	lsiwgoB513
Lsi06G008060	CsGy1G032340	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G008060	CsaV3_1G045660	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G008060	Cucurbita pepo (Zucchini)	cpelsiB559
Lsi06G008060	Watermelon (97103) v1	lsiwmB419
Lsi06G008060	Silver-seed gourd	carlsiB830
Lsi06G008060	Wax gourd	lsiwgoB521
Lsi06G008060	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G008060	Cucurbita moschata (Rifu)	cmolsiB118