CSPI01G33770 (gene) Wild cucumber (PI 183967)

NameCSPI01G33770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCalcium-binding EF hand family protein
LocationChr1 : 28736841 .. 28737296 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCAATATTAATTATTCTCTGTCGCTCTTCTTTCTCTTAAAATAAAATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCACGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAGGAAATAGATCAATTGCA

mRNA sequence

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCACGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAG

Coding sequence (CDS)

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCACGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAG
BLAST of CSPI01G33770 vs. TrEMBL
Match: A0A0A0LYD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-65
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKF VEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKAREQK
Sbjct: 121 ELEKAREQK 129

BLAST of CSPI01G33770 vs. TrEMBL
Match: W9QVC9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006174 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF-RSHPLEFELM 60
           M +A LN++TVT FI D + FD C+ +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  +++G ID +EFKS+ ++++LAMA+GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVELEKAR 127
           LM+AVE E  R
Sbjct: 121 LMRAVEHELER 130

BLAST of CSPI01G33770 vs. TrEMBL
Match: B9MZG7_POPTR (Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0005s05150g PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-22
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF---RSHPLEFE 60
           MS+A +N+TTVT F+ D K F++CVKE F+ LD D DG L+ +ELR GF    S   E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  +++G ID  EFK +IR+++ AM +G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVELE 124
           KAVE E
Sbjct: 121 KAVEHE 126

BLAST of CSPI01G33770 vs. TrEMBL
Match: A0A068ULR0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027520001 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-19
Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNEL--RVG-FRSHPLEFE 60
           MSV F++   +T F+ND+  F + V E F +LD D DG L+ +EL  R G F S   E +
Sbjct: 1   MSVVFVDGPVITKFVNDSGAFTEFVDEHFNRLDADGDGVLSRDELQKRFGRFSSRGFELQ 60

Query: 61  LMDPVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + + +L  V+  KF V+++G ID EEF+S++++I++A A+ IGN P+ + LQ+DS LM
Sbjct: 61  SQEEIGNLYNVLFEKFDVDQNGTIDREEFRSLMKEIMVAKARAIGNSPVPIILQEDSLLM 120

Query: 121 KAVE 122
           +AV+
Sbjct: 121 RAVQ 124

BLAST of CSPI01G33770 vs. TrEMBL
Match: A0A022Q1Y7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018466mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.5e-18
Identity = 50/124 (40.32%), Postives = 83/124 (66.94%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNEL--RVG-FRSHPLEFE 60
           MS+ F++  TV  F+ND++ F+    E FK LD D DG L+ +EL  RVG   S   + +
Sbjct: 1   MSIEFVDGQTVMEFVNDSQAFEKWTNEKFKTLDADADGVLSRDELQKRVGKLSSMKFDLQ 60

Query: 61  LMDPVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             D ++ L +++ +KF V+KSG ID +EF++++++++LA A+GIGN P+ + +  DS LM
Sbjct: 61  SKDEINSLYDLLFNKFDVDKSGTIDPDEFRALMKEMMLAKARGIGNSPISIIVHGDSLLM 120

Query: 121 KAVE 122
           +AV+
Sbjct: 121 RAVQ 124

BLAST of CSPI01G33770 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-17
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPL-----E 60
           M V  ++ +TV +F++D + F   V E F  LD + DG L+ +ELR  F S  L      
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  FELMDPVDDLSEV---VCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVAL-- 120
            +++ P D+L+ +   +  KF  ++SG +D EEF+S ++ I+LA+A G+G+ P+ + L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 QQDSFLMKAVELEKAREQK 130
             D+FL KA +LE ++ +K
Sbjct: 121 DDDNFLKKAADLEASKLEK 139

BLAST of CSPI01G33770 vs. TAIR10
Match: AT1G54530.1 (AT1G54530.1 Calcium-binding EF hand family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 40/127 (31.50%), Postives = 72/127 (56.69%), Query Frame = 1

Query: 6   LNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSH-PLEFELM--DPV 65
           +   T+  F++DTK F+    + F+ LD D +G L+ +ELR G  +   +E E+   D  
Sbjct: 6   ITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAPGDET 65

Query: 66  DDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAVEL 125
           D++   +  +F  +    +  + F+ +I +IL AMA+GIGN P+ + +  D  +MKAV L
Sbjct: 66  DNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLIMKAV-L 125

Query: 126 EKAREQK 130
            ++++ K
Sbjct: 126 HESKQGK 127

BLAST of CSPI01G33770 vs. TAIR10
Match: AT4G38810.2 (AT4G38810.2 Calcium-binding EF-hand family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 1

Query: 6   LNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFEL-----MD 65
           L+ + +   + + K+FD  V++ F++LD D DG L++ EL+           L       
Sbjct: 15  LDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGTSP 74

Query: 66  PVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQD 114
             D +   V ++F       + + EFK V+ DILL MA G+   P+ V L+ D
Sbjct: 75  DSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI-VILRMD 126

BLAST of CSPI01G33770 vs. NCBI nr
Match: gi|449449633|ref|XP_004142569.1| (PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.5e-65
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKF VEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKAREQK
Sbjct: 121 ELEKAREQK 129

BLAST of CSPI01G33770 vs. NCBI nr
Match: gi|659125605|ref|XP_008462771.1| (PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-58
Identity = 118/129 (91.47%), Postives = 121/129 (93.80%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLD DNDGFLN NELR GF S PLE ELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDRDNDGFLNKNELRNGFGSQPLELELMD 60

Query: 61  PVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDL EVVCHKF+VEKSGGIDE+EFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLCEVVCHKFNVEKSGGIDEKEFKSVIRDILLAMALGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKA+EQK
Sbjct: 121 ELEKAKEQK 129

BLAST of CSPI01G33770 vs. NCBI nr
Match: gi|703076147|ref|XP_010090267.1| (hypothetical protein L484_006174 [Morus notabilis])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF-RSHPLEFELM 60
           M +A LN++TVT FI D + FD C+ +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  +++G ID +EFKS+ ++++LAMA+GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVELEKAR 127
           LM+AVE E  R
Sbjct: 121 LMRAVEHELER 130

BLAST of CSPI01G33770 vs. NCBI nr
Match: gi|566169581|ref|XP_006382759.1| (calcium-binding EF hand family protein [Populus trichocarpa])

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-22
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF---RSHPLEFE 60
           MS+A +N+TTVT F+ D K F++CVKE F+ LD D DG L+ +ELR GF    S   E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  +++G ID  EFK +IR+++ AM +G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVELE 124
           KAVE E
Sbjct: 121 KAVEHE 126

BLAST of CSPI01G33770 vs. NCBI nr
Match: gi|743866448|ref|XP_011032468.1| (PREDICTED: uncharacterized protein LOC105131264 [Populus euphratica])

HSP 1 Score: 112.5 bits (280), Expect = 5.7e-22
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 1

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF---RSHPLEFE 60
           MS+A +N+TTVT F+ D K F++CVKE F+ LD D DG L+ +ELR GF    S   E  
Sbjct: 1   MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 60

Query: 61  LMDPVDDLSEVVCHKFHVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  +++G ID  EFK +IR+++ AM +G GN P+ VAL+ DS LM
Sbjct: 61  KKEKIDHLFDTIFDRFDEDQNGSIDPHEFKCLIRELMSAMGRGFGNSPVLVALEIDSLLM 120

Query: 121 KAVELE 124
           KAVE E
Sbjct: 121 KAVEHE 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYD8_CUCSA3.8e-6599.22Uncharacterized protein OS=Cucumis sativus GN=Csa_1G695380 PE=4 SV=1[more]
W9QVC9_9ROSA1.0e-2247.33Uncharacterized protein OS=Morus notabilis GN=L484_006174 PE=4 SV=1[more]
B9MZG7_POPTR2.3e-2246.83Calcium-binding EF hand family protein OS=Populus trichocarpa GN=POPTR_0005s0515... [more]
A0A068ULR0_COFCA7.0e-1941.94Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027520001 PE=4 SV=1[more]
A0A022Q1Y7_ERYGU3.5e-1840.32Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018466mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44310.15.9e-1735.25 Calcium-binding EF-hand family protein[more]
AT1G54530.11.4e-1031.50 Calcium-binding EF hand family protein[more]
AT4G38810.21.2e-0629.20 Calcium-binding EF-hand family protein[more]
Match NameE-valueIdentityDescription
gi|449449633|ref|XP_004142569.1|5.5e-6599.22PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus][more]
gi|659125605|ref|XP_008462771.1|2.9e-5891.47PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo][more]
gi|703076147|ref|XP_010090267.1|1.5e-2247.33hypothetical protein L484_006174 [Morus notabilis][more]
gi|566169581|ref|XP_006382759.1|3.4e-2246.83calcium-binding EF hand family protein [Populus trichocarpa][more]
gi|743866448|ref|XP_011032468.1|5.7e-2246.83PREDICTED: uncharacterized protein LOC105131264 [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055074 calcium ion homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005432 calcium:sodium antiporter activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33770.1CSPI01G33770.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 26..89
score: 2.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 24..52
score: 0.0014coord: 65..93
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 77..96
score: 6.48coord: 20..55
score: 11
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 25..95
score: 8.2
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 17..95
score: 9.31
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..123
score: 2.1
NoneNo IPR availablePANTHERPTHR10891:SF597SUBFAMILY NOT NAMEDcoord: 1..123
score: 2.1