CsaV3_1G045660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G045660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCalcium-binding EF hand family protein, putative
Locationchr1 : 31507472 .. 31508322 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGTTAATGTATTTAAATACACTAATAACATAAATCAAACCAAAACCAATATTAATTATTCTCTGTCGCTCTTCTTTCTCTTAAAATAAAATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCAAGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAGGAAATAGATCAATTGCATCACAATGAGATTTTCTTTTTCATATATAGATTATTAAAACACTTTTGAATTAAGTACTTCAATTATTGTGTTGGTTGGATGTGGATATTGTGGTTGTACACACACATTTGAATATCAAAATGTATAAAATATACATTATTTCCTCATCGAGACAAAATGTATAACTTTGAACAAAATGGTCAAAGGGTTGAATTCTCATTAACTCATAACAAAAAAGTTTGAAAATTCAAGGCGTCATTACTCTCTTGGGCTCGTGGTCCAACATCATAACAAAAAAAGTTTAGAATGTCATTAGCTTGTATTAAGTTGAAAATGTTTTTAGAAAAGTCATCCATTTGTTCTACACTCG

mRNA sequence

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCAAGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAG

Coding sequence (CDS)

ATGAGTGTGGCTTTTCTTAATGATACAACAGTTACAAACTTCATCAATGACACCAAGATATTTGACGATTGTGTCAAGGAAAGTTTTAAGAAACTCGACACGGACAATGATGGGTTTCTCAACATGAATGAACTTCGGGTCGGGTTTCGGAGTCATCCATTAGAATTTGAATTAATGGATCCTGTGGATGATCTTTCTGAGGTTGTTTGTCATAAATTTCAAGTGGAGAAAAGTGGTGGGATTGACGAAGAAGAGTTTAAATCTGTAATAAGGGATATTCTTCTTGCTATGGCCCAGGGGATTGGGAACTTTCCTCTTCAAGTTGCACTTCAACAAGATAGCTTTCTCATGAAGGCTGTTGAACTTGAAAAGGCCAGAGAACAAAAATAG

Protein sequence

MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMDPVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAVELEKAREQK
Homology
[Close]
BLAST of CsaV3_1G045660 vs. NCBI nr
Match: XP_004142569.1 (PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus] >KGN66803.1 hypothetical protein Csa_1G695380 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 3.6e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKAREQK
Sbjct: 121 ELEKAREQK 129

[Close]
BLAST of CsaV3_1G045660 vs. NCBI nr
Match: XP_008462771.1 (PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 9.6e-58
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLD DNDGFLN NELR GF S PLE ELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDRDNDGFLNKNELRNGFGSQPLELELMD 60

Query: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDL EVVCHKF VEKSGGIDE+EFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLCEVVCHKFNVEKSGGIDEKEFKSVIRDILLAMALGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKA+EQK
Sbjct: 121 ELEKAKEQK 129

[Close]
BLAST of CsaV3_1G045660 vs. NCBI nr
Match: XP_022158640.1 (uncharacterized protein LOC111025096 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-41
Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTV +FINDTKIFD+CVKESF+KLD D DG LN NEL  GFRS        D
Sbjct: 1   MSVAFLNDTTVIDFINDTKIFDNCVKESFQKLDIDKDGILNANELLAGFRSS------TD 60

Query: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDLS+ VC KF VEKSGGI+E EFKSV+ +ILLA+A GIGN PLQVALQQD  LMKAV
Sbjct: 61  PVDDLSQTVCRKFNVEKSGGINENEFKSVVTEILLAIAYGIGNLPLQVALQQDGLLMKAV 120

Query: 121 ELEKAREQ 129
           E E+A+E+
Sbjct: 121 EHERAKEE 122

[Close]
BLAST of CsaV3_1G045660 vs. NCBI nr
Match: XP_010090267.1 (uncharacterized protein LOC21389613 [Morus notabilis] >EXB39205.1 hypothetical protein L484_006174 [Morus notabilis])

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF-RSHPLEFELM 60
           M +A LN++TVT FI D + FD C+ +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  +++G ID +EFKS+ ++++LAMA+GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVELEKAR 127
           LM+AVE E  R
Sbjct: 121 LMRAVEHELER 130

[Close]
BLAST of CsaV3_1G045660 vs. NCBI nr
Match: XP_006382759.2 (uncharacterized protein LOC18098935 [Populus trichocarpa] >PNT35000.1 hypothetical protein POPTR_005G049900v3 [Populus trichocarpa])

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF---RSHPLEFE 60
           MS+A +N+TTVT F+ D K F++CVKE F+ LD D DG L+ +ELR GF    S   E  
Sbjct: 22  MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 81

Query: 61  LMDPVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  +++G ID  EFK +IR+++ AM +G GN P+ VAL+ DS LM
Sbjct: 82  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 141

Query: 121 KAVELE 124
           KAVE E
Sbjct: 142 KAVEHE 147

[Close]
BLAST of CsaV3_1G045660 vs. TAIR10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-17
Identity = 49/139 (35.25%), Postives = 83/139 (59.71%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPL-----E 60
           M V  ++ +TV +F++D + F   V E F  LD + DG L+ +ELR  F S  L      
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  FELMDPVDDLSEV---VCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVAL-- 120
            +++ P D+L+ +   +  KF  ++SG +D EEF+S ++ I+LA+A G+G+ P+ + L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 QQDSFLMKAVELEKAREQK 130
             D+FL KA +LE ++ +K
Sbjct: 121 DDDNFLKKAADLEASKLEK 139

[Close]
BLAST of CsaV3_1G045660 vs. TAIR10
Match: AT1G54530.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-10
Identity = 40/127 (31.50%), Postives = 72/127 (56.69%), Query Frame = 0 

Query: 6   LNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRS-HPLEFELM--DPV 65
           +   T+  F++DTK F+    + F+ LD D +G L+ +ELR G  +   +E E+   D  
Sbjct: 6   ITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAPGDET 65

Query: 66  DDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAVEL 125
           D++   +  +F  +    +  + F+ +I +IL AMA+GIGN P+ + +  D  +MKAV L
Sbjct: 66  DNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLIMKAV-L 125

Query: 126 EKAREQK 130
            ++++ K
Sbjct: 126 HESKQGK 127

[Close]
BLAST of CsaV3_1G045660 vs. TAIR10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 33/113 (29.20%), Postives = 55/113 (48.67%), Query Frame = 0 

Query: 6   LNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFEL-----MD 65
           L+ + +   + + K+FD  V++ F++LD D DG L++ EL+           L       
Sbjct: 15  LDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGTSP 74

Query: 66  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQD 114
             D +   V ++F       + + EFK V+ DILL MA G+   P+ V L+ D
Sbjct: 75  DSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI-VILRMD 126

[Close]
BLAST of CsaV3_1G045660 vs. TrEMBL
Match: tr|A0A0A0LYD8|A0A0A0LYD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695380 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60

Query: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKAREQK
Sbjct: 121 ELEKAREQK 129

[Close]
BLAST of CsaV3_1G045660 vs. TrEMBL
Match: tr|A0A1S3CI80|A0A1S3CI80_CUCME (uncharacterized protein LOC103501058 OS=Cucumis melo OX=3656 GN=LOC103501058 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 6.4e-58
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRSHPLEFELMD 60
           MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLD DNDGFLN NELR GF S PLE ELMD
Sbjct: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDRDNDGFLNKNELRNGFGSQPLELELMD 60

Query: 61  PVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLMKAV 120
           PVDDL EVVCHKF VEKSGGIDE+EFKSVIRDILLAMA GIGNFPLQVALQQDSFLMKAV
Sbjct: 61  PVDDLCEVVCHKFNVEKSGGIDEKEFKSVIRDILLAMALGIGNFPLQVALQQDSFLMKAV 120

Query: 121 ELEKAREQK 130
           ELEKA+EQK
Sbjct: 121 ELEKAKEQK 129

[Close]
BLAST of CsaV3_1G045660 vs. TrEMBL
Match: tr|W9QVC9|W9QVC9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006174 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF-RSHPLEFELM 60
           M +A LN++TVT FI D + FD C+ +SF  LD D DG L+  ELRVGF R  PL   + 
Sbjct: 1   MRLAILNNSTVTQFIEDEETFDGCIGQSFAMLDADGDGALSREELRVGFGRVLPLG-SVS 60

Query: 61  DP----VDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSF 120
           DP     D+L + +  +F  +++G ID +EFKS+ ++++LAMA+GIG+ P+Q+A+ +DSF
Sbjct: 61  DPRKEVADNLFDEIFRRFDSDQNGAIDRQEFKSLSKEMVLAMARGIGDLPVQLAIDRDSF 120

Query: 121 LMKAVELEKAR 127
           LM+AVE E  R
Sbjct: 121 LMRAVEHELER 130

[Close]
BLAST of CsaV3_1G045660 vs. TrEMBL
Match: tr|A0A2K2ABW8|A0A2K2ABW8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G049900v3 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGF---RSHPLEFE 60
           MS+A +N+TTVT F+ D K F++CVKE F+ LD D DG L+ +ELR GF    S   E  
Sbjct: 22  MSLAVVNETTVTTFVEDMKAFENCVKECFEMLDVDGDGVLSRSELREGFCKLMSLGHESS 81

Query: 61  LMDPVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFLM 120
             + +D L + +  +F  +++G ID  EFK +IR+++ AM +G GN P+ VAL+ DS LM
Sbjct: 82  KKEKIDHLFDTIFDRFDEDQNGSIDPREFKCLIRELMFAMGRGFGNSPVLVALEIDSLLM 141

Query: 121 KAVELE 124
           KAVE E
Sbjct: 142 KAVEHE 147

[Close]
BLAST of CsaV3_1G045660 vs. TrEMBL
Match: tr|A0A200RDC4|A0A200RDC4_9MAGN (EF-hand domain OS=Macleaya cordata OX=56857 GN=BVC80_881g73 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.2e-21
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 0 

Query: 1   MSVAFLNDTTVTNFINDTKIFDDCVKESFKKLDTDNDGFLNMNELRVGFRS----HPLEF 60
           MSVA LN  TV +F+ D + F+ CV E FK LD + DG L  +ELR GF S         
Sbjct: 1   MSVAVLNGLTVKSFVEDGEAFNKCVNEHFKDLDVNGDGVLTRSELRKGFDSLLSAGNDAG 60

Query: 61  ELMDPVDDLSEVVCHKFQVEKSGGIDEEEFKSVIRDILLAMAQGIGNFPLQVALQQDSFL 120
              + + +L ++V  KF  +KSG +D EEF+S +++I+LA+A GIG+ P+QVAL  DSFL
Sbjct: 61  STEEEMSNLYDIVFEKFDSDKSGTVDLEEFRSEMKEIMLAVASGIGDTPVQVALGSDSFL 120

Query: 121 MKAVELEKAR 127
           MKAVE E A+
Sbjct: 121 MKAVEHELAK 130

The following BLAST results are available for this feature:
BLAST of CsaV3_1G045660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142569.13.6e-65100.00PREDICTED: uncharacterized protein LOC101222885 [Cucumis sativus] >KGN66803.1 hy... [more]
XP_008462771.19.6e-5891.47PREDICTED: uncharacterized protein LOC103501058 [Cucumis melo][more]
XP_022158640.12.2e-4171.88uncharacterized protein LOC111025096 [Momordica charantia][more]
XP_010090267.12.9e-2247.33uncharacterized protein LOC21389613 [Morus notabilis] >EXB39205.1 hypothetical p... [more]
XP_006382759.26.5e-2246.83uncharacterized protein LOC18098935 [Populus trichocarpa] >PNT35000.1 hypothetic... [more]
BLAST of CsaV3_1G045660 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44310.15.9e-1735.25Calcium-binding EF-hand family protein[more]
AT1G54530.11.8e-1031.50Calcium-binding EF hand family protein[more]
AT4G38810.21.2e-0629.20Calcium-binding EF-hand family protein[more]
BLAST of CsaV3_1G045660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYD8|A0A0A0LYD8_CUCSA2.4e-65100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695380 PE=4 SV=1[more]
tr|A0A1S3CI80|A0A1S3CI80_CUCME6.4e-5891.47uncharacterized protein LOC103501058 OS=Cucumis melo OX=3656 GN=LOC103501058 PE=... [more]
tr|W9QVC9|W9QVC9_9ROSA1.9e-2247.33Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006174 PE=4 SV=1[more]
tr|A0A2K2ABW8|A0A2K2ABW8_POPTR4.3e-2246.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G049900v3 PE=... [more]
tr|A0A200RDC4|A0A200RDC4_9MAGN6.2e-2147.69EF-hand domain OS=Macleaya cordata OX=56857 GN=BVC80_881g73 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055074 calcium ion homeostasis
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005432 calcium:sodium antiporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G045660.1CsaV3_1G045660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 24..52
e-value: 0.0014
score: 27.9
coord: 65..93
e-value: 89.0
score: 2.0
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 26..89
e-value: 1.6E-7
score: 31.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 61..96
score: 7.344
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 20..55
score: 11.752
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 4..102
e-value: 8.0E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR44089:SF3SUBFAMILY NOT NAMEDcoord: 1..126
NoneNo IPR availablePANTHERPTHR44089FAMILY NOT NAMEDcoord: 1..126
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 17..95

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G045660CSPI01G33770Wild cucumber (PI 183967)cpicucB000
CsaV3_1G045660Cucsa.332270Cucumber (Gy14) v1cgycucB513
CsaV3_1G045660CsGy1G032340Cucumber (Gy14) v2cgybcucB001
CsaV3_1G045660Cla003752Watermelon (97103) v1cucwmB101
CsaV3_1G045660MELO3C024676Melon (DHL92) v3.5.1cucmeB045
CsaV3_1G045660ClCG06G009130Watermelon (Charleston Gray)cucwcgB091
CsaV3_1G045660Lsi06G008060Bottle gourd (USVL1VR-Ls)cuclsiB068
CsaV3_1G045660MELO3C024676.2Melon (DHL92) v3.6.1cucmedB042
CsaV3_1G045660Cla97C06G118920Watermelon (97103) v2cucwmbB079
CsaV3_1G045660Bhi02G001014Wax gourdcucwgoB099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G045660Silver-seed gourdcarcucB0949
CsaV3_1G045660Cucurbita maxima (Rimu)cmacucB0099
CsaV3_1G045660Cucurbita moschata (Rifu)cmocucB0090
CsaV3_1G045660Cucurbita pepo (Zucchini)cpecucB0799
CsaV3_1G045660Bottle gourd (USVL1VR-Ls)cuclsiB089
CsaV3_1G045660Watermelon (Charleston Gray)cucwcgB083
CsaV3_1G045660Watermelon (97103) v2cucwmbB072
CsaV3_1G045660Wax gourdcucwgoB112