Lsi06G007010 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G007010
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionZinc finger (C2H2 type) family protein
Locationchr06 : 11135490 .. 11136925 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCGCGGCTAAGATCGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGGCTCGCCGACCGGTCTGGCCACGAGAAAGGTGGCCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCGCCTGATGTCAAGTCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAAGAGGACAAGGTTGTGAATCTCCACGCTGTTCGTATTGCTGCCGAGGCGTCGAAGGGGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGAAGAAAAAATCCGGATTCATGAGGATGGATGATGATGATTATGGTGGGTGGGCTCAATTCTATGGTATTGGGTACTTTTGTTTTTTTTTTTCTTTAAAAAGAAATCTTGGTCCCTCTATGTCTTCTCTCTGGTGCTGATGGAAGGTGGTTTTTAACTTGTAAGGTGTTTGAGTAAAACATATTCGATGTCCTTGGAGCTAAGGTCTTTGAAATTATGTATATTACATAAAAACATGATCATTGTTGTTATGGTAACGATGGAGGTGTTCATGTTCTTATCGTCTCTGCTTATCATGTCATGCTTAATTTTAGTAAGAATTAGAGTGGGCTTAAGATGCTTATGGCTTGAGAATATGTTGTGTGATTTTTGTTGTTATTTTGATATTTAGAAAGTAGATTAATGGGGAATGATTAATGGTTGACCCAGCTATGAAAGGAGGAAATTCGTAACCACAAATGTCTCTGTGGTCGTCATATCTTCACTTATGTAAGTTCAATGTTTGATATTTATATCGAAGAAGTTACTTAGAGGTTTGCATAACTTGTTAAACAACGATGTTTTAGGAGAAAAGTAGTTTTCTTTCAGGGCATCAAATATTCTGGGAATAAGTTTTCATTGTCTTACTTTTTTTTTTCTTTTTGATAGTTGTGTTTGTTTAACCGTTTGGTATAATATAGCTGAAGTTGCGAATCAGATGACAAACGACCTTACTTGAACAGGATTTGTTCTATAAGTTGTACAACTTTGTTGCTAGTTTGGATTGGCAAGCGCAAGTATCTTCGTTGTTGTTTTTCTTTAACCAAGTCTTTGTAATAAGTTAATGCCTCATCTCTTTGTTCTACCTCATGAGTGCCTGTGAGTTTGAGTTTGGGTTGGCCTTTTTCTTTCTTCAGAGAAGCTTTATAAATGAGATCTTTCATAGCAATCTGTCAATATCTGCTGTGTATTTATATTTGCATATTTGTGTTGTCTTCACTCAGGCTCCCATTTTACCTTTTTATCACCTTGCTTTTGGGCTCCAAGGAGCTACTGCACCACAATTCTCTTCTTCTATAGTGGTTAATTTGAATCCTCTTGGTATCAGGCTCGGTTTAGATTCCAGTGTAATTAGTGTTTAG

mRNA sequence

ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCGCGGCTAAGATCGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGGCTCGCCGACCGGTCTGGCCACGAGAAAGGTGGCCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCGCCTGATGTCAAGTCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAAGAGGACAAGGTTGTGAATCTCCACGCTGTTCGTATTGCTGCCGAGGCGTCGAAGGGGAAACCGGGTGCTCCCATTTTACCTTTTTATCACCTTGCTTTTGGGCTCCAAGGAGCTACTGCACCACAATTCTCTTCTTCTATAGTGGTTAATTTGAATCCTCTTGGTATCAGGCTCGGTTTAGATTCCAGTGTAATTAGTGTTTAG

Coding sequence (CDS)

ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCGCGGCTAAGATCGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGGCTCGCCGACCGGTCTGGCCACGAGAAAGGTGGCCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCGCCTGATGTCAAGTCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAAGAGGACAAGGTTGTGAATCTCCACGCTGTTCGTATTGCTGCCGAGGCGTCGAAGGGGAAACCGGGTGCTCCCATTTTACCTTTTTATCACCTTGCTTTTGGGCTCCAAGGAGCTACTGCACCACAATTCTCTTCTTCTATAGTGGTTAATTTGAATCCTCTTGGTATCAGGCTCGGTTTAGATTCCAGTGTAATTAGTGTTTAG

Protein sequence

MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVKSMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPGAPILPFYHLAFGLQGATAPQFSSSIVVNLNPLGIRLGLDSSVISV
BLAST of Lsi06G007010 vs. TrEMBL
Match: A0A0A0LXT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.4e-46
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECP+CKITAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHESKHPK+P+EE+KV+NLHAVR+AAEASK KPG
Sbjct: 61 SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPG 98

BLAST of Lsi06G007010 vs. TrEMBL
Match: A0A0L9U3Q3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g040000 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.4e-41
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHE++HPKIP+EEDKVVNLHA  IA+E+SK +PG
Sbjct: 61 SMQIHHEARHPKIPFEEDKVVNLHAT-IASESSKQRPG 97

BLAST of Lsi06G007010 vs. TrEMBL
Match: A0A0S3RSG7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G069000 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 9.4e-41
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHE++HPKIP+EEDKVVNLHA  IA+E+SK +PG
Sbjct: 61 SMQIHHEARHPKIPFEEDKVVNLHAT-IASESSKQRPG 97

BLAST of Lsi06G007010 vs. TrEMBL
Match: A0A067JSC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18024 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.7e-40
Identity = 78/98 (79.59%), Postives = 91/98 (92.86%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAG  DR+G +KGGHAK+ECPHCK+TAPD+K
Sbjct: 1  MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGQKDRTGQDKGGHAKYECPHCKVTAPDLK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHE++HPK+PYEEDK+VNLHAV +A  +SK +PG
Sbjct: 61 SMQIHHEARHPKLPYEEDKLVNLHAVHVADSSSKPRPG 98

BLAST of Lsi06G007010 vs. TrEMBL
Match: T2DMN3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.1e-40
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = 1

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKVVNLHAVRIAA--EASKGKPG 99
           SMQIHHE++HPKIP+EE+KV NLHA   +A  E+SKG+PG
Sbjct: 61  SMQIHHEARHPKIPFEEEKVANLHATTTSAAPESSKGRPG 100

BLAST of Lsi06G007010 vs. TAIR10
Match: AT3G02790.1 (AT3G02790.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 160.6 bits (405), Expect = 7.1e-40
Identity = 78/98 (79.59%), Postives = 84/98 (85.71%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG+ADR+G EKGGHAK+ECPHCKITAP +K
Sbjct: 1  MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          +MQIHHESKHP I YEE K+VNLHAV      SK KPG
Sbjct: 61 TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPG 98

BLAST of Lsi06G007010 vs. TAIR10
Match: AT5G16470.1 (AT5G16470.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-37
Identity = 76/99 (76.77%), Postives = 85/99 (85.86%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKE+ AK DAA TNRGGGKAGLADR+G EKGGHAK+ECPHCKIT PD+K
Sbjct: 1  MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLH-AVRIAAEASKGKPG 99
          +MQIHHESKHPK+ YEE +  NLH A+   AE+SK KPG
Sbjct: 61 TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPG 97

BLAST of Lsi06G007010 vs. NCBI nr
Match: gi|659085963|ref|XP_008443699.1| (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHESKHPKIP+EEDKV NLHAVR+ AEASK KPG
Sbjct: 61 SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPG 98

BLAST of Lsi06G007010 vs. NCBI nr
Match: gi|778664122|ref|XP_011660225.1| (PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45
Identity = 91/98 (92.86%), Postives = 97/98 (98.98%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECP+CKITAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHESKHPK+P+EE+KV+NLHAVR+AAEASK KPG
Sbjct: 61 SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPG 98

BLAST of Lsi06G007010 vs. NCBI nr
Match: gi|920693794|gb|KOM37019.1| (hypothetical protein LR48_Vigan03g040000 [Vigna angularis])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHE++HPKIP+EEDKVVNLHA  IA+E+SK +PG
Sbjct: 61 SMQIHHEARHPKIPFEEDKVVNLHAT-IASESSKQRPG 97

BLAST of Lsi06G007010 vs. NCBI nr
Match: gi|950962617|ref|XP_014498140.1| (PREDICTED: uncharacterized protein LOC106759468 [Vigna radiata var. radiata])

HSP 1 Score: 173.3 bits (438), Expect = 3.0e-40
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG EKGGHAK+ECP CK+TAPDVK
Sbjct: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGVEKGGHAKYECPLCKVTAPDVK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHHE++HPKIP+EEDKVVNLHA  IA+E+SK +PG
Sbjct: 61 SMQIHHEARHPKIPFEEDKVVNLHAT-IASESSKARPG 97

BLAST of Lsi06G007010 vs. NCBI nr
Match: gi|1009118290|ref|XP_015875779.1| (PREDICTED: uncharacterized protein LOC107412516 [Ziziphus jujuba])

HSP 1 Score: 172.6 bits (436), Expect = 5.1e-40
Identity = 79/98 (80.61%), Postives = 94/98 (95.92%), Query Frame = 1

Query: 1  MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
          MTGKAKPKKHTAKEIA+K+DAATTNRGGGKAGLADRSGHEKGGHAK+ECPHCK+TAPD+K
Sbjct: 1  MTGKAKPKKHTAKEIASKVDAATTNRGGGKAGLADRSGHEKGGHAKYECPHCKVTAPDLK 60

Query: 61 SMQIHHESKHPKIPYEEDKVVNLHAVRIAAEASKGKPG 99
          SMQIHH+++HPKIP+EE+K+VNLH+  + AE+SK +PG
Sbjct: 61 SMQIHHDARHPKIPFEEEKLVNLHSTHV-AESSKPRPG 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXT9_CUCSA7.4e-4692.86Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1[more]
A0A0L9U3Q3_PHAAN9.4e-4186.73Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g040000 PE=4 SV=1[more]
A0A0S3RSG7_PHAAN9.4e-4186.73Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G069000 PE=... [more]
A0A067JSC6_JATCU4.7e-4079.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18024 PE=4 SV=1[more]
T2DMN3_PHAVU6.1e-4083.00Uncharacterized protein OS=Phaseolus vulgaris PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT3G02790.17.1e-4079.59 zinc finger (C2H2 type) family protein[more]
AT5G16470.11.9e-3776.77 zinc finger (C2H2 type) family protein[more]
Match NameE-valueIdentityDescription
gi|659085963|ref|XP_008443699.1|3.7e-4694.90PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo][more]
gi|778664122|ref|XP_011660225.1|1.1e-4592.86PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus][more]
gi|920693794|gb|KOM37019.1|1.3e-4086.73hypothetical protein LR48_Vigan03g040000 [Vigna angularis][more]
gi|950962617|ref|XP_014498140.1|3.0e-4086.73PREDICTED: uncharacterized protein LOC106759468 [Vigna radiata var. radiata][more]
gi|1009118290|ref|XP_015875779.1|5.1e-4080.61PREDICTED: uncharacterized protein LOC107412516 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026939At2g23090-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G007010.1Lsi06G007010.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026939At2g23090-likePANTHERPTHR21213FAMILY NOT NAMEDcoord: 2..98
score: 2.2
IPR026939At2g23090-likeunknownSSF118359Expressed protein At2g23090/F21P24.15coord: 29..77
score: 1.1
NoneNo IPR availablePANTHERPTHR21213:SF6SUBFAMILY NOT NAMEDcoord: 2..98
score: 2.2