Carg22728 (gene) Silver-seed gourd

NameCarg22728
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger (C2H2 type) family protein
LocationCucurbita_argyrosperma_scaffold_230 : 372464 .. 372778 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTTGCTGACCGGTCCGGCCAAGTTAAGGGTGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGTCAAACCGGGTGTGAGAGGTAGCTTAAAGAAGTGA

mRNA sequence

ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTTGCTGACCGGTCCGGCCAAGTTAAGGGTGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGTCAAACCGGGTGTGAGAGGTAGCTTAAAGAAGTGA

Coding sequence (CDS)

ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTTGCTGACCGGTCCGGCCAAGTTAAGGGTGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGTCAAACCGGGTGTGAGAGGTAGCTTAAAGAAGTGA

Protein sequence

MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVKTMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK
BLAST of Carg22728 vs. NCBI nr
Match: XP_022933784.1 (uncharacterized protein LOC111441095 [Cucurbita moschata])

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK
Sbjct: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 104

BLAST of Carg22728 vs. NCBI nr
Match: XP_023005775.1 (uncharacterized protein LOC111498671 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 1.6e-50
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           TMQIHHESKHPKIPFEED+VTNLHVDRAAE SKVKPGVRGSLKK
Sbjct: 61  TMQIHHESKHPKIPFEEDRVTNLHVDRAAEGSKVKPGVRGSLKK 104

BLAST of Carg22728 vs. NCBI nr
Match: XP_023520657.1 (uncharacterized protein LOC111784065 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 1.6e-50
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASK KPGVRGSLKK
Sbjct: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 104

BLAST of Carg22728 vs. NCBI nr
Match: XP_022961022.1 (uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022961023.1 uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022988627.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988628.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988629.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988631.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988632.1 uncharacterized protein LOC111485822 [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 4.4e-45
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSGQ KGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKVKPGVRGSLKK 105
           TMQIHHESKHPKIP+EEDKV NLH  R AAEASK KPGVRGS KK
Sbjct: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 105

BLAST of Carg22728 vs. NCBI nr
Match: XP_008443699.1 (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 5.7e-45
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKVKPGVRGSLKK 105
           +MQIHHESKHPKIPFEEDKVTNLH  R  AEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

BLAST of Carg22728 vs. TAIR10
Match: AT3G02790.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 163.7 bits (413), Expect = 6.1e-41
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG+ADR+G+ KGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEA-SKVKPGVRGSLKK 105
           TMQIHHESKHP I +EE K+ NLH   A  A SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

BLAST of Carg22728 vs. TAIR10
Match: AT5G16470.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-40
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+ AK DAA TNRGGGKAGLADR+G+ KGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRA--AEASKVKPGVRGSLKK 105
           TMQIHHESKHPK+ +EE +  NLH   A  AE+SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

BLAST of Carg22728 vs. Swiss-Prot
Match: sp|Q9M8S0|MBS1_ARATH (Protein METHYLENE BLUE SENSITIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MBS1 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-39
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG+ADR+G+ KGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEA-SKVKPGVRGSLKK 105
           TMQIHHESKHP I +EE K+ NLH   A  A SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

BLAST of Carg22728 vs. Swiss-Prot
Match: sp|Q9FFD8|MBS2_ARATH (Protein METHYLENE BLUE SENSITIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MBS2 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.3e-39
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+ AK DAA TNRGGGKAGLADR+G+ KGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRA--AEASKVKPGVRGSLKK 105
           TMQIHHESKHPK+ +EE +  NLH   A  AE+SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

BLAST of Carg22728 vs. TrEMBL
Match: tr|A0A1S3B9F4|A0A1S3B9F4_CUCME (uncharacterized protein LOC103487230 OS=Cucumis melo OX=3656 GN=LOC103487230 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKVKPGVRGSLKK 105
           +MQIHHESKHPKIPFEEDKVTNLH  R  AEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

BLAST of Carg22728 vs. TrEMBL
Match: tr|A0A0A0LXT9|A0A0A0LXT9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657510 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.1e-44
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKVKPGVRGSLKK 105
           +MQIHHESKHPK+PFEE+KV NLH  R AAEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

BLAST of Carg22728 vs. TrEMBL
Match: tr|A0A1Q3CIB3|A0A1Q3CIB3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_23305 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-43
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGL DRSG  KGGHAK+ECPHCK+TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLKDRSGLEKGGHAKYECPHCKVTAPDIK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           TMQIHH+SKHPKIP+EEDK+ NLH   AA+ SK +PGVRGSLKK
Sbjct: 61  TMQIHHDSKHPKIPYEEDKIVNLHATLAADTSKSRPGVRGSLKK 104

BLAST of Carg22728 vs. TrEMBL
Match: tr|A0A151TAT7|A0A151TAT7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_018749 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.6e-43
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           +MQIHH+++HPKIPFEEDK+ NLH     E+SK +PGVRGSLKK
Sbjct: 61  SMQIHHDARHPKIPFEEDKIVNLHASHVPESSKPRPGVRGSLKK 104

BLAST of Carg22728 vs. TrEMBL
Match: tr|K7MUG8|K7MUG8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100788257 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-42
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGL DRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLKDRSGLEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKVKPGVRGSLKK 105
           +MQIHH+++HPKIPFEEDKV NLH     E+SK +PGVRGSLKK
Sbjct: 61  SMQIHHDARHPKIPFEEDKVVNLHATHVPESSKPRPGVRGSLKK 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022933784.12.4e-51100.00uncharacterized protein LOC111441095 [Cucurbita moschata][more]
XP_023005775.11.6e-5098.08uncharacterized protein LOC111498671 [Cucurbita maxima][more]
XP_023520657.11.6e-5099.04uncharacterized protein LOC111784065 [Cucurbita pepo subsp. pepo][more]
XP_022961022.14.4e-4591.43uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022961023.1 unchar... [more]
XP_008443699.15.7e-4591.43PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G02790.16.1e-4178.10zinc finger (C2H2 type) family protein[more]
AT5G16470.15.2e-4076.42zinc finger (C2H2 type) family protein[more]
Match NameE-valueIdentityDescription
sp|Q9M8S0|MBS1_ARATH1.1e-3978.10Protein METHYLENE BLUE SENSITIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MBS1 PE=... [more]
sp|Q9FFD8|MBS2_ARATH9.3e-3976.42Protein METHYLENE BLUE SENSITIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MBS2 PE=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B9F4|A0A1S3B9F4_CUCME3.8e-4591.43uncharacterized protein LOC103487230 OS=Cucumis melo OX=3656 GN=LOC103487230 PE=... [more]
tr|A0A0A0LXT9|A0A0A0LXT9_CUCSA7.1e-4488.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657510 PE=4 SV=1[more]
tr|A0A1Q3CIB3|A0A1Q3CIB3_CEPFO2.1e-4382.69Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_23305 PE=4... [more]
tr|A0A151TAT7|A0A151TAT7_CAJCA4.6e-4381.73Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_018749 PE=4 SV=1[more]
tr|K7MUG8|K7MUG8_SOYBN1.8e-4281.73Uncharacterized protein OS=Glycine max OX=3847 GN=100788257 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22728-RACarg22728-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..44
NoneNo IPR availablePANTHERPTHR21213FAMILY NOT NAMEDcoord: 1..104
NoneNo IPR availablePANTHERPTHR21213:SF13SUBFAMILY NOT NAMEDcoord: 1..104
NoneNo IPR availableSUPERFAMILYSSF118359Expressed protein At2g23090/F21P24.15coord: 29..77