Cp4.1LG00g01550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g01550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger family protein
Location	Cp4.1LG00 : 3848068 .. 3848382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTCGCTGACCGGTCCGGCCAAGTTAAGGGCGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGGCAAACCGGGTGTGAGAGGTAGTTTAAAGAAGTGA

mRNA sequence

ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTCGCTGACCGGTCCGGCCAAGTTAAGGGCGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGGCAAACCGGGTGTGAGAGGTAGTTTAAAGAAGTGA

Coding sequence (CDS)

ATGACGGGGAAGGCTAAGCCGAAGAAGCACACCGCGAAAGAGATCGCCGCGAAGATCGACGCAGCCACCACCAATAGAGGCGGCGGAAAGGCCGGTCTCGCTGACCGGTCCGGCCAAGTTAAGGGCGGCCATGCCAAGTTCGAGTGTCCACACTGCAAGATTACGGCGCCTGATGTAAAGACTATGCAGATTCATCACGAGTCGAAGCACCCCAAAATCCCTTTTGAGGAGGACAAGGTTACGAATCTCCACGTTGATCGTGCTGCCGAGGCGTCTAAGGGCAAACCGGGTGTGAGAGGTAGTTTAAAGAAGTGA

Protein sequence

MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVKTMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK

Homology

[Close]

BLAST of Cp4.1LG00g01550 vs. TrEMBL
Match: A0A0A0LXT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.6e-44
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKGKPGVRGSLKK 105
           +MQIHHESKHPK+PFEE+KV NLH  R AAEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

[Close]

BLAST of Cp4.1LG00g01550 vs. TrEMBL
Match: A0A151TAT7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_018749 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.3e-43
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           +MQIHH+++HPKIPFEEDK+ NLH     E+SK +PGVRGSLKK
Sbjct: 61  SMQIHHDARHPKIPFEEDKIVNLHASHVPESSKPRPGVRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. TrEMBL
Match: K7MUG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G241900 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGL DRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLKDRSGLEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           +MQIHH+++HPKIPFEEDKV NLH     E+SK +PGVRGSLKK
Sbjct: 61  SMQIHHDARHPKIPFEEDKVVNLHATHVPESSKPRPGVRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. TrEMBL
Match: A0A0L9U3Q3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g040000 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           +MQIHHE++HPKIPFEEDKV NLH   A+E+SK +PG+RGS KK
Sbjct: 61  SMQIHHEARHPKIPFEEDKVVNLHATIASESSKQRPGIRGSHKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. TrEMBL
Match: A0A0D2V7B6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G179600 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-42
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECPHCK TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGVEKGGHAKFECPHCKTTAPDLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           TMQIHH++KHPK+PFEE K+ NLH    A++SK +PGVRGSLKK
Sbjct: 61  TMQIHHDAKHPKLPFEESKLVNLHSTHGADSSKPRPGVRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. TAIR10
Match: AT3G02790.1 (AT3G02790.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 163.3 bits (412), Expect = 8.0e-41
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG+ADR+G+ KGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEA-SKGKPGVRGSLKK 105
           TMQIHHESKHP I +EE K+ NLH   A  A SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

[Close]

BLAST of Cp4.1LG00g01550 vs. TAIR10
Match: AT5G16470.1 (AT5G16470.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 160.2 bits (404), Expect = 6.7e-40
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+ AK DAA TNRGGGKAGLADR+G+ KGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRA--AEASKGKPGVRGSLKK 105
           TMQIHHESKHPK+ +EE +  NLH   A  AE+SK KPG+RGSLKK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. NCBI nr
Match: gi|729422130|ref|XP_010558583.1| (PREDICTED: uncharacterized protein LOC104827174 [Tarenaya hassleriana])

HSP 1 Score: 189.1 bits (479), Expect = 3.8e-45
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSGQ KGGHAK+ECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKLDAATTNRGGGKAGLADRSGQEKGGHAKYECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           TMQIHHES+HPKIPFEE KVTNLH  R A+ +K KPG+RGSLKK
Sbjct: 61  TMQIHHESRHPKIPFEEAKVTNLHASRPADLAKPKPGIRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. NCBI nr
Match: gi|659085963|ref|XP_008443699.1| (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 3.8e-45
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKGKPGVRGSLKK 105
           +MQIHHESKHPKIPFEEDKVTNLH  R  AEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

[Close]

BLAST of Cp4.1LG00g01550 vs. NCBI nr
Match: gi|729459528|ref|XP_010525089.1| (PREDICTED: uncharacterized protein LOC104802953 [Tarenaya hassleriana])

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-44
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAG+ADRSGQ KGGHAK+ECPHCK+TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKLDAATTNRGGGKAGIADRSGQEKGGHAKYECPHCKVTAPDIK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           TMQIHHESKHPKIPFEE KV NLH  R  E++K KPGVRGSLKK
Sbjct: 61  TMQIHHESKHPKIPFEEAKVVNLHSSRPVESAKPKPGVRGSLKK 104

[Close]

BLAST of Cp4.1LG00g01550 vs. NCBI nr
Match: gi|778664122|ref|XP_011660225.1| (PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSG  KGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKGKPGVRGSLKK 105
           +MQIHHESKHPK+PFEE+KV NLH  R AAEASK KPGVRGS KK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

[Close]

BLAST of Cp4.1LG00g01550 vs. NCBI nr
Match: gi|1012352971|gb|KYP64159.1| (hypothetical protein KK1_018749 [Cajanus cajan])

HSP 1 Score: 182.2 bits (461), Expect = 4.7e-43
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSG  KGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPFEEDKVTNLHVDRAAEASKGKPGVRGSLKK 105
           +MQIHH+++HPKIPFEEDK+ NLH     E+SK +PGVRGSLKK
Sbjct: 61  SMQIHHDARHPKIPFEEDKIVNLHASHVPESSKPRPGVRGSLKK 104

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g01550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g01550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXT9_CUCSA	8.6e-44	88.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1	[more]
A0A151TAT7_CAJCA	3.3e-43	81.73	Uncharacterized protein OS=Cajanus cajan GN=KK1_018749 PE=4 SV=1	[more]
K7MUG8_SOYBN	1.2e-42	81.73	Uncharacterized protein OS=Glycine max GN=GLYMA_18G241900 PE=4 SV=1	[more]
A0A0L9U3Q3_PHAAN	2.1e-42	82.69	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g040000 PE=4 SV=1	[more]
A0A0D2V7B6_GOSRA	2.1e-42	82.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G179600 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g01550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02790.1	8.0e-41	78.10	zinc finger (C2H2 type) family protein	[more]
AT5G16470.1	6.7e-40	76.42	zinc finger (C2H2 type) family protein	[more]

BLAST of Cp4.1LG00g01550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729422130\|ref\|XP_010558583.1\|	3.8e-45	87.50	PREDICTED: uncharacterized protein LOC104827174 [Tarenaya hassleriana]	[more]
gi\|659085963\|ref\|XP_008443699.1\|	3.8e-45	91.43	PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo]	[more]
gi\|729459528\|ref\|XP_010525089.1\|	1.9e-44	85.58	PREDICTED: uncharacterized protein LOC104802953 [Tarenaya hassleriana]	[more]
gi\|778664122\|ref\|XP_011660225.1\|	1.2e-43	88.57	PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus]	[more]
gi\|1012352971\|gb\|KYP64159.1\|	4.7e-43	81.73	hypothetical protein KK1_018749 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026939	At2g23090-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g01550.1	Cp4.1LG00g01550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	At2g23090-like	GENE3D	G3DSA:4.10.1050.10		coord: 43..77 score: 8.
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 2..104 score: 3.1
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 29..77 score: 2.75
None	No IPR available	PANTHER	PTHR21213:SF6	SUBFAMILY NOT NAMED	coord: 2..104 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g01550	Cucsa.356740	Cucumber (Gy14) v1	cgycpeB0927
Cp4.1LG00g01550	CmoCh10G008610	Cucurbita moschata (Rifu)	cmocpeB042
Cp4.1LG00g01550	CmoCh11G009620	Cucurbita moschata (Rifu)	cmocpeB079
Cp4.1LG00g01550	Cla009558	Watermelon (97103) v1	cpewmB006
Cp4.1LG00g01550	Csa1G657510	Cucumber (Chinese Long) v2	cpecuB000
Cp4.1LG00g01550	MELO3C010059	Melon (DHL92) v3.5.1	cpemeB007
Cp4.1LG00g01550	ClCG03G010710	Watermelon (Charleston Gray)	cpewcgB012
Cp4.1LG00g01550	CSPI01G32360	Wild cucumber (PI 183967)	cpecpiB000
Cp4.1LG00g01550	Lsi06G007010	Bottle gourd (USVL1VR-Ls)	cpelsiB017
Cp4.1LG00g01550	MELO3C010059.2	Melon (DHL92) v3.6.1	cpemedB008
Cp4.1LG00g01550	CsaV3_1G044540	Cucumber (Chinese Long) v3	cpecucB0000
Cp4.1LG00g01550	Carg22728	Silver-seed gourd	carcpeB0756
Cp4.1LG00g01550	Carg17794	Silver-seed gourd	carcpeB1340

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g01550	Cucurbita pepo (Zucchini)	cpecpeB006
Cp4.1LG00g01550	Cucurbita maxima (Rimu)	cmacpeB070
Cp4.1LG00g01550	Cucurbita maxima (Rimu)	cmacpeB103
Cp4.1LG00g01550	Cucumber (Gy14) v2	cgybcpeB002
Cp4.1LG00g01550	Wax gourd	cpewgoB0018