Carg17794 (gene) Silver-seed gourd

NameCarg17794
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger (C2H2 type) family protein
LocationCucurbita_argyrosperma_scaffold_070 : 69398 .. 69715 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGTGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGATTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCATGCTGTTCGTGTTGCTGCTGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGCAGCTTCAAGAAGTGA

mRNA sequence

ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGTGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGATTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCATGCTGTTCGTGTTGCTGCTGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGCAGCTTCAAGAAGTGA

Coding sequence (CDS)

ATGACGGGTAAGGCGAAGCCGAAGAAGCACACGGCAAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGTGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGATTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCATGCTGTTCGTGTTGCTGCTGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGCAGCTTCAAGAAGTGA

Protein sequence

MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVKTMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK
BLAST of Carg17794 vs. NCBI nr
Match: XP_022961022.1 (uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022961023.1 uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022988627.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988628.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988629.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988631.1 uncharacterized protein LOC111485822 [Cucurbita maxima] >XP_022988632.1 uncharacterized protein LOC111485822 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK
Sbjct: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 105

BLAST of Carg17794 vs. NCBI nr
Match: XP_023516233.1 (uncharacterized protein LOC111780149 [Cucurbita pepo subsp. pepo] >XP_023516234.1 uncharacterized protein LOC111780149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 3.7e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKVTAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK
Sbjct: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 105

BLAST of Carg17794 vs. NCBI nr
Match: XP_008443699.1 (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 8.6e-49
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSG EKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           +MQIHHESKHPKIP+EEDKV NLHAVRV AEASKPKPGVRGS+KK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

BLAST of Carg17794 vs. NCBI nr
Match: XP_011660225.1 (PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus] >KGN66675.1 hypothetical protein Csa_1G657510 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 2.1e-47
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSG EKGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           +MQIHHESKHPK+P+EE+KV+NLHAVRVAAEASK KPGVRGS+KK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

BLAST of Carg17794 vs. NCBI nr
Match: XP_022933784.1 (uncharacterized protein LOC111441095 [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 5.8e-45
Identity = 96/105 (91.43%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSGQ KGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGQVKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPKIP+EEDKV NLH  R AAEASK KPGVRGS KK
Sbjct: 61  TMQIHHESKHPKIPFEEDKVTNLHVDR-AAEASKVKPGVRGSLKK 104

BLAST of Carg17794 vs. TAIR10
Match: AT3G02790.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.4e-45
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAKIDAA TNRGGGKAG+ADR+G+EKGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHP I YEE K+VNLHAV      SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

BLAST of Carg17794 vs. TAIR10
Match: AT5G16470.1 (zinc finger (C2H2 type) family protein)

HSP 1 Score: 171.0 bits (432), Expect = 3.9e-43
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+QAK DAA TNRGGGKAGLADR+G+EKGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLH-AVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPK+ YEE +  NLH A+   AE+SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

BLAST of Carg17794 vs. Swiss-Prot
Match: sp|Q9M8S0|MBS1_ARATH (Protein METHYLENE BLUE SENSITIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MBS1 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-44
Identity = 86/105 (81.90%), Postives = 93/105 (88.57%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAKIDAA TNRGGGKAG+ADR+G+EKGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHP I YEE K+VNLHAV      SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

BLAST of Carg17794 vs. Swiss-Prot
Match: sp|Q9FFD8|MBS2_ARATH (Protein METHYLENE BLUE SENSITIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MBS2 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 7.0e-42
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+QAK DAA TNRGGGKAGLADR+G+EKGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLH-AVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPK+ YEE +  NLH A+   AE+SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

BLAST of Carg17794 vs. TrEMBL
Match: tr|A0A1S3B9F4|A0A1S3B9F4_CUCME (uncharacterized protein LOC103487230 OS=Cucumis melo OX=3656 GN=LOC103487230 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.7e-49
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSG EKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           +MQIHHESKHPKIP+EEDKV NLHAVRV AEASKPKPGVRGS+KK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

BLAST of Carg17794 vs. TrEMBL
Match: tr|A0A0A0LXT9|A0A0A0LXT9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657510 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAATTNRGGGKAGLADRSG EKGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           +MQIHHESKHPK+P+EE+KV+NLHAVRVAAEASK KPGVRGS+KK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

BLAST of Carg17794 vs. TrEMBL
Match: tr|A0A2U1L3F9|A0A2U1L3F9_ARTAN (Zinc finger (C2H2 type) family protein OS=Artemisia annua OX=35608 GN=CTI12_AA536380 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-44
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAK+DAATTNRGGGKAG+ADR+GQ KGGHAKFECPHCKITAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIQAKVDAATTNRGGGKAGVADRTGQVKGGHAKFECPHCKITAPDIK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPK+PY+E K+ NLHAV     A KPKPGVRGS KK
Sbjct: 61  TMQIHHESKHPKLPYDESKITNLHAVLAPVVAEKPKPGVRGSLKK 105

BLAST of Carg17794 vs. TrEMBL
Match: tr|A0A251TAY0|A0A251TAY0_HELAN (Putative zinc finger (C2H2 type) family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr11g0333601 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.5e-44
Identity = 87/105 (82.86%), Postives = 95/105 (90.48%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAK+DAATTNRGGGKAG+ADR+GQ KGGHAKFECPHCKITAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIQAKVDAATTNRGGGKAGVADRTGQLKGGHAKFECPHCKITAPDIK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHHESKHPK+PY+E K+ NLHAV      SKP+PGVRGS KK
Sbjct: 61  TMQIHHESKHPKLPYDESKITNLHAVLAPVVESKPRPGVRGSLKK 105

BLAST of Carg17794 vs. TrEMBL
Match: tr|A0A078GVL9|A0A078GVL9_BRANA (BnaCnng05940D protein OS=Brassica napus OX=3708 GN=BnaCnng05940D PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.2e-44
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0

Query: 1   MTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIQAKIDAA TNRGGGKAG+ADR+G+EKGGHAKFECPHCKITAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRNGKEKGGHAKFECPHCKITAPDLK 60

Query: 61  TMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 106
           TMQIHH+SKHPKIPYEE K+VNLHAV      SKPKPG+RGS  K
Sbjct: 61  TMQIHHDSKHPKIPYEESKLVNLHAVLAPVAESKPKPGIRGSLTK 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961022.12.9e-52100.00uncharacterized protein LOC111461652 [Cucurbita moschata] >XP_022961023.1 unchar... [more]
XP_023516233.13.7e-5299.05uncharacterized protein LOC111780149 [Cucurbita pepo subsp. pepo] >XP_023516234.... [more]
XP_008443699.18.6e-4993.33PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo][more]
XP_011660225.12.1e-4790.48PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus] >KGN66675.1 hy... [more]
XP_022933784.15.8e-4591.43uncharacterized protein LOC111441095 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G02790.11.4e-4581.90zinc finger (C2H2 type) family protein[more]
AT5G16470.13.9e-4379.25zinc finger (C2H2 type) family protein[more]
Match NameE-valueIdentityDescription
sp|Q9M8S0|MBS1_ARATH2.6e-4481.90Protein METHYLENE BLUE SENSITIVITY 1 OS=Arabidopsis thaliana OX=3702 GN=MBS1 PE=... [more]
sp|Q9FFD8|MBS2_ARATH7.0e-4279.25Protein METHYLENE BLUE SENSITIVITY 2 OS=Arabidopsis thaliana OX=3702 GN=MBS2 PE=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3B9F4|A0A1S3B9F4_CUCME5.7e-4993.33uncharacterized protein LOC103487230 OS=Cucumis melo OX=3656 GN=LOC103487230 PE=... [more]
tr|A0A0A0LXT9|A0A0A0LXT9_CUCSA1.4e-4790.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657510 PE=4 SV=1[more]
tr|A0A2U1L3F9|A0A2U1L3F9_ARTAN1.5e-4483.81Zinc finger (C2H2 type) family protein OS=Artemisia annua OX=35608 GN=CTI12_AA53... [more]
tr|A0A251TAY0|A0A251TAY0_HELAN5.5e-4482.86Putative zinc finger (C2H2 type) family protein OS=Helianthus annuus OX=4232 GN=... [more]
tr|A0A078GVL9|A0A078GVL9_BRANA7.2e-4483.81BnaCnng05940D protein OS=Brassica napus OX=3708 GN=BnaCnng05940D PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17794-RACarg17794-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availablePANTHERPTHR21213:SF13SUBFAMILY NOT NAMEDcoord: 1..105
NoneNo IPR availablePANTHERPTHR21213FAMILY NOT NAMEDcoord: 1..105
NoneNo IPR availableSUPERFAMILYSSF118359Expressed protein At2g23090/F21P24.15coord: 26..77