ClCG03G010710 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G010710
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	zinc finger (C2H2 type) family protein LENGTH=105
Location	CG_Chr03 : 19510804 .. 19511121 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGA

mRNA sequence

ATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGA

Coding sequence (CDS)

ATGACAGGTAAGGCGAAGCCAAAGAAGCACACGGCAAAAGAGATTGCGGCGAAGATTGACGCAGCCACCACCAACAGAGGCGGCGGAAAGGCCGGACTCGCCGACCGGTCTGGCCATGAGAAAGGCGGTCACGCCAAGTTCGAGTGCCCACACTGCAAGATTACGGCACCTGATGTCAAATCTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAGGACAAGATTGTGAATCTCCACGCTGTTCGTGTTGCTGCCGATGCATCGAAGCCGAAACCGGGTGTGAGAGGCAGCTACAAGAAGTGA

Protein sequence

MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVKSMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK

Homology

[Close]

BLAST of ClCG03G010710 vs. TrEMBL
Match: A0A0A0LXT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-51
Identity = 97/105 (92.38%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHESKHPK+P+EE+K++NLHAVRVAA+ASK KPGVRGSYKK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

[Close]

BLAST of ClCG03G010710 vs. TrEMBL
Match: A0A067JSC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18024 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-46
Identity = 86/105 (81.90%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAG  DR+G +KGGHAK+ECPHCK+TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGQKDRTGQDKGGHAKYECPHCKVTAPDLK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHE++HPK+PYEEDK+VNLHAV VA  +SKP+PGVRGS+KK
Sbjct: 61  SMQIHHEARHPKLPYEEDKLVNLHAVHVADSSSKPRPGVRGSHKK 105

[Close]

BLAST of ClCG03G010710 vs. TrEMBL
Match: A0A151TAT7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_018749 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-45
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHH+++HPKIP+EEDKIVNLHA  V  ++SKP+PGVRGS KK
Sbjct: 61  SMQIHHDARHPKIPFEEDKIVNLHASHV-PESSKPRPGVRGSLKK 104

[Close]

BLAST of ClCG03G010710 vs. TrEMBL
Match: A0A0V0YRJ0_9BILA (Uncharacterized protein OS=Trichinella patagoniensis GN=T12_2265 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.6e-45
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSGH+KGGHAKFECPHC+ITAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGHDKGGHAKFECPHCRITAPDMK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHE++HPKIP+EE K+ +LHA   A D SKP+PGVRGS+KK
Sbjct: 61  SMQIHHEARHPKIPFEESKLTDLHASN-AGDPSKPRPGVRGSFKK 104

[Close]

BLAST of ClCG03G010710 vs. TrEMBL
Match: A0A0S3RSG7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G069000 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-45
Identity = 87/105 (82.86%), Postives = 100/105 (95.24%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAG ADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGQADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHE++HPKIP+EEDK+VNLHA  +A+++SK +PG+RGS+KK
Sbjct: 61  SMQIHHEARHPKIPFEEDKVVNLHAT-IASESSKQRPGIRGSHKK 104

[Close]

BLAST of ClCG03G010710 vs. TAIR10
Match: AT3G02790.1 (AT3G02790.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 8.3e-46
Identity = 84/105 (80.00%), Postives = 89/105 (84.76%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEI AKIDAA TNRGGGKAG+ADR+G EKGGHAK+ECPHCKITAP +K
Sbjct: 1   MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           +MQIHHESKHP I YEE K+VNLHAV      SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105

[Close]

BLAST of ClCG03G010710 vs. TAIR10
Match: AT5G16470.1 (AT5G16470.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 170.6 bits (431), Expect = 5.0e-43
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKE+ AK DAA TNRGGGKAGLADR+G EKGGHAK+ECPHCKIT PD+K
Sbjct: 1   MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLH-AVRVAADASKPKPGVRGSYKK 106
           +MQIHHESKHPK+ YEE +  NLH A+   A++SKPKPG+RGS KK
Sbjct: 61  TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104

[Close]

BLAST of ClCG03G010710 vs. NCBI nr
Match: gi|659085963|ref|XP_008443699.1| (PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHESKHPKIP+EEDK+ NLHAVRV A+ASKPKPGVRGSYKK
Sbjct: 61  SMQIHHESKHPKIPFEEDKVTNLHAVRVTAEASKPKPGVRGSYKK 105

[Close]

BLAST of ClCG03G010710 vs. NCBI nr
Match: gi|778664122|ref|XP_011660225.1| (PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-51
Identity = 97/105 (92.38%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECP+CKITAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPYCKITAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHESKHPK+P+EE+K++NLHAVRVAA+ASK KPGVRGSYKK
Sbjct: 61  SMQIHHESKHPKVPFEEEKVINLHAVRVAAEASKTKPGVRGSYKK 105

[Close]

BLAST of ClCG03G010710 vs. NCBI nr
Match: gi|802724519|ref|XP_012085757.1| (PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas])

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-46
Identity = 86/105 (81.90%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAG  DR+G +KGGHAK+ECPHCK+TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGQKDRTGQDKGGHAKYECPHCKVTAPDLK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHHE++HPK+PYEEDK+VNLHAV VA  +SKP+PGVRGS+KK
Sbjct: 61  SMQIHHEARHPKLPYEEDKLVNLHAVHVADSSSKPRPGVRGSHKK 105

[Close]

BLAST of ClCG03G010710 vs. NCBI nr
Match: gi|1009118290|ref|XP_015875779.1| (PREDICTED: uncharacterized protein LOC107412516 [Ziziphus jujuba])

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-46
Identity = 86/105 (81.90%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIA+K+DAATTNRGGGKAGLADRSGHEKGGHAK+ECPHCK+TAPD+K
Sbjct: 1   MTGKAKPKKHTAKEIASKVDAATTNRGGGKAGLADRSGHEKGGHAKYECPHCKVTAPDLK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHH+++HPKIP+EE+K+VNLH+  V A++SKP+PGVRGS+KK
Sbjct: 61  SMQIHHDARHPKIPFEEEKLVNLHSTHV-AESSKPRPGVRGSFKK 104

[Close]

BLAST of ClCG03G010710 vs. NCBI nr
Match: gi|1012352971|gb|KYP64159.1| (hypothetical protein KK1_018749 [Cajanus cajan])

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 89/105 (84.76%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 1   MTGKAKPKKHTAKEIAAKIDAATTNRGGGKAGLADRSGHEKGGHAKFECPHCKITAPDVK 60
           MTGKAKPKKHTAKEIAAK+DAATTNRGGGKAGLADRSG EKGGHAK+ECPHCK+TAPDVK
Sbjct: 1   MTGKAKPKKHTAKEIAAKVDAATTNRGGGKAGLADRSGVEKGGHAKYECPHCKVTAPDVK 60

Query: 61  SMQIHHESKHPKIPYEEDKIVNLHAVRVAADASKPKPGVRGSYKK 106
           SMQIHH+++HPKIP+EEDKIVNLHA  V  ++SKP+PGVRGS KK
Sbjct: 61  SMQIHHDARHPKIPFEEDKIVNLHASHV-PESSKPRPGVRGSLKK 104

The following BLAST results are available for this feature:

BLAST of ClCG03G010710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXT9_CUCSA	1.9e-51	92.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657510 PE=4 SV=1	[more]
A0A067JSC6_JATCU	1.4e-46	81.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18024 PE=4 SV=1	[more]
A0A151TAT7_CAJCA	1.2e-45	84.76	Uncharacterized protein OS=Cajanus cajan GN=KK1_018749 PE=4 SV=1	[more]
A0A0V0YRJ0_9BILA	1.6e-45	82.86	Uncharacterized protein OS=Trichinella patagoniensis GN=T12_2265 PE=4 SV=1	[more]
A0A0S3RSG7_PHAAN	2.1e-45	82.86	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G069000 PE=...	[more]

BLAST of ClCG03G010710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02790.1	8.3e-46	80.00	zinc finger (C2H2 type) family protein	[more]
AT5G16470.1	5.0e-43	76.42	zinc finger (C2H2 type) family protein	[more]

BLAST of ClCG03G010710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085963\|ref\|XP_008443699.1\|	1.1e-52	95.24	PREDICTED: uncharacterized protein LOC103487230 [Cucumis melo]	[more]
gi\|778664122\|ref\|XP_011660225.1\|	2.8e-51	92.38	PREDICTED: uncharacterized protein LOC101210666 [Cucumis sativus]	[more]
gi\|802724519\|ref\|XP_012085757.1\|	2.1e-46	81.90	PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]	[more]
gi\|1009118290\|ref\|XP_015875779.1\|	2.7e-46	81.90	PREDICTED: uncharacterized protein LOC107412516 [Ziziphus jujuba]	[more]
gi\|1012352971\|gb\|KYP64159.1\|	1.7e-45	84.76	hypothetical protein KK1_018749 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026939	At2g23090-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0071452	cellular response to singlet oxygen
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004725	protein tyrosine phosphatase activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010710.1	ClCG03G010710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026939	At2g23090-like	PANTHER	PTHR21213	FAMILY NOT NAMED	coord: 2..105 score: 4.0
IPR026939	At2g23090-like	unknown	SSF118359	Expressed protein At2g23090/F21P24.15	coord: 29..77 score: 1.1
None	No IPR available	PANTHER	PTHR21213:SF6	SUBFAMILY NOT NAMED	coord: 2..105 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG03G010710	Csa1G657510	Cucumber (Chinese Long) v2	cuwcgB038
ClCG03G010710	MELO3C010059	Melon (DHL92) v3.5.1	mewcgB239
ClCG03G010710	Cla009558	Watermelon (97103) v1	wcgwmB225
ClCG03G010710	Cla97C03G061340	Watermelon (97103) v2	wcgwmbB186
ClCG03G010710	CSPI01G32360	Wild cucumber (PI 183967)	cpiwcgB041
ClCG03G010710	Cucsa.356740	Cucumber (Gy14) v1	cgywcgB605
ClCG03G010710	CmaCh10G008310	Cucurbita maxima (Rimu)	cmawcgB058
ClCG03G010710	CmoCh10G008610	Cucurbita moschata (Rifu)	cmowcgB050
ClCG03G010710	CmoCh11G009620	Cucurbita moschata (Rifu)	cmowcgB098
ClCG03G010710	Lsi06G007010	Bottle gourd (USVL1VR-Ls)	lsiwcgB361
ClCG03G010710	Cp4.1LG00g01550	Cucurbita pepo (Zucchini)	cpewcgB012
ClCG03G010710	MELO3C010059.2	Melon (DHL92) v3.6.1	medwcgB230
ClCG03G010710	Carg22728	Silver-seed gourd	carwcgB0519
ClCG03G010710	Carg17794	Silver-seed gourd	carwcgB0945
ClCG03G010710	CsaV3_1G044540	Cucumber (Chinese Long) v3	cucwcgB041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G010710	Cucumber (Gy14) v2	cgybwcgB036
ClCG03G010710	Wax gourd	wcgwgoB366
ClCG03G010710	Cucurbita maxima (Rimu)	cmawcgB108
ClCG03G010710	Cucurbita pepo (Zucchini)	cpewcgB322