Lsi06G000520 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi06G000520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor, putative
Locationchr06 : 402447 .. 403076 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCGATTGCTTCTAACCTACAAGACCTCAGGAGTTCTGATTTCACGGAGCAGCGTCCGAGTAAACGCCGAAAAATTGAATCGGAGAATCAAGCGGCGGAGATTTGCGTTGCTGAATCCGCGGATTTGAGAAGACGGTGGAGAACAGAGTCGGAGCAGCGGATTTACTCTTCTAAATTAGTTGATGCTCTTCATCGAGTAACCACTCAGAAATCCGCATCGATTCCACCGAGAACTTCGATGGACGGCCGCAAAGTCCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGAAAGACTCGCTGGAGCAGAGCAATCCTCACGAATCGACTTGAACTCAAACTCAAGAAGCATAAGAAGGTGAAGCCGGTCGGAAACTGTAGCCGGCCGAAGAAATTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGATGCAGAGGAAAGTTCGAACTCTCGGCCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTTCCGAACCTTCTTGAAGAAACGTCGGATTACATCGCCGCTCTACAGATGCAGGTCCGTGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCGCTCCGACAGATCGTCAAAGTTTTAGAACAAATTCGTAG

mRNA sequence

ATGGATGCGATTGCTTCTAACCTACAAGACCTCAGGAGTTCTGATTTCACGGAGCAGCGTCCGAGTAAACGCCGAAAAATTGAATCGGAGAATCAAGCGGCGGAGATTTGCGTTGCTGAATCCGCGGATTTGAGAAGACGGTGGAGAACAGAGTCGGAGCAGCGGATTTACTCTTCTAAATTAGTTGATGCTCTTCATCGAGTAACCACTCAGAAATCCGCATCGATTCCACCGAGAACTTCGATGGACGGCCGCAAAGTCCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGAAAGACTCGCTGGAGCAGAGCAATCCTCACGAATCGACTTGAACTCAAACTCAAGAAGCATAAGAAGGTGAAGCCGGTCGGAAACTGTAGCCGGCCGAAGAAATTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGATGCAGAGGAAAGTTCGAACTCTCGGCCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTTCCGAACCTTCTTGAAGAAACGTCGGATTACATCGCCGCTCTACAGATGCAGGTCCGTGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCGCTCCGACAGATCGTCAAAGTTTTAGAACAAATTCGTAG

Coding sequence (CDS)

ATGGATGCGATTGCTTCTAACCTACAAGACCTCAGGAGTTCTGATTTCACGGAGCAGCGTCCGAGTAAACGCCGAAAAATTGAATCGGAGAATCAAGCGGCGGAGATTTGCGTTGCTGAATCCGCGGATTTGAGAAGACGGTGGAGAACAGAGTCGGAGCAGCGGATTTACTCTTCTAAATTAGTTGATGCTCTTCATCGAGTAACCACTCAGAAATCCGCATCGATTCCACCGAGAACTTCGATGGACGGCCGCAAAGTCCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGAAAGACTCGCTGGAGCAGAGCAATCCTCACGAATCGACTTGAACTCAAACTCAAGAAGCATAAGAAGGTGAAGCCGGTCGGAAACTGTAGCCGGCCGAAGAAATTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGATGCAGAGGAAAGTTCGAACTCTCGGCCGCCTGGTTCCCGGCTGCCGGAAAATCTCATTTCCGAACCTTCTTGAAGAAACGTCGGATTACATCGCCGCTCTACAGATGCAGGTCCGTGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCGCTCCGACAGATCGTCAAAGTTTTAGAACAAATTCGTAG

Protein sequence

MDAIASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELLAGAPTDRQSFRTNS
Homology
[Close]
BLAST of Lsi06G000520 vs. Swiss-Prot
Match: BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 1 

Query: 22  SKRRKIE-SENQAAEICVAE-SADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPR 81
           S+R+K   SE   AEI     + +  +RW+T   Q+IY+ KLV+AL RV  + S +    
Sbjct: 16  SRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNE 75

Query: 82  T----SMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKV-KPVGNCSRPK 141
           T    S   R++R+TADRVLA +A+G TRWSRAIL +R+  KLKKH+K  K  GNC   K
Sbjct: 76  TDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRK 135

Query: 142 KLKIRYETR--KLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVA 199
            L    ET   KLP ++RK++ LGRLVPGCRK+S PNLL+E +DYIAAL+MQVRAM A+A
Sbjct: 136 GLT---ETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALA 195

[Close]
BLAST of Lsi06G000520 vs. Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 89/210 (42.38%), Postives = 131/210 (62.38%), Query Frame = 1 

Query: 4   IASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVD 63
           +++ L    ++     R  ++RK +S   + E   + S  L + WR+E +Q+IYS+KLV 
Sbjct: 7   VSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEK-WRSEKQQQIYSTKLVH 66

Query: 64  ALH--RVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKH 123
           AL   R++ Q S+S        GR VRE ADR LAVAA+GKT WSRAIL+  ++LK +KH
Sbjct: 67  ALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKH 126

Query: 124 KKVKPVGNCS---------RPKKLK---IRYETRKLPTMQRKVRTLGRLVPGCRKISFPN 183
           K+ + + N +         R KK +   +R + + LP +QRKV+ L RLVPGCRK S P 
Sbjct: 127 KRQR-ISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPV 186

Query: 184 LLEETSDYIAALQMQVRAMTAVAELLAGAP 200
           +LEET+DYIAA++MQ+R MTA+   ++ +P
Sbjct: 187 VLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]
BLAST of Lsi06G000520 vs. Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 89/212 (41.98%), Postives = 125/212 (58.96%), Query Frame = 1 

Query: 4   IASNLQDLRSSDFTEQRPSKRRKIESENQAAEI---CVAESADLRRRWRTESEQRIYSSK 63
           +AS + D+     T     +R+K  S + AA       + S ++  RWR+E +QRIYS+K
Sbjct: 1   MASLISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAK 60

Query: 64  LVDALHRVTTQKSASIP--PRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKL 123
           L  AL +V    SAS    P     G+ VRE ADR LAV+A+G+T WSRAIL NR++LK 
Sbjct: 61  LFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKF 120

Query: 124 KKHKK-------------VKPVGNCSRPKKLKI-RYETRKLPTMQRKVRTLGRLVPGCRK 183
           +K ++             V    N SR +++ + R   + +P + RKVR LGRLVPGC K
Sbjct: 121 RKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGK 180

Query: 184 ISFPNLLEETSDYIAALQMQVRAMTAVAELLA 197
            S P +LEE +DYI AL+MQVRAM ++ +LL+
Sbjct: 181 QSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of Lsi06G000520 vs. Swiss-Prot
Match: BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-25
Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 23  KRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPRTSM 82
           +R ++ SE        A    L RRWR  + Q++YS KL DAL R  +++SA+       
Sbjct: 45  RRSRVSSEE-------APVRHLSRRWRATTAQKVYSLKLYDALQR--SRRSAT------- 104

Query: 83  DGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKVKPVGNCSRP-KKLKIRYE 142
               VR+TAD+VLA  A+G TRWSRAIL +R    L++ +  KP    +   +       
Sbjct: 105 ----VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGR 164

Query: 143 TRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELLA 197
            RKL  +  +VR LG LVPGCR+ + P LL+ET+DYIAAL+MQVRAMTA++++L+
Sbjct: 165 RRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of Lsi06G000520 vs. TrEMBL
Match: A0A0A0LVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.8e-80
Identity = 174/211 (82.46%), Postives = 182/211 (86.26%), Query Frame = 1 

Query: 1   MDAIASNLQDLRSSDFTE-QRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSS 60
           MD I+SNLQ L SSDFTE QRPSKRRKI S     EI V ESAD  RRW TESE RIYSS
Sbjct: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62

Query: 61  KLVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTN-RLELKL 120
           KLVDALHRVT QKSAS+P  +S+DGRKVRETADRVLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122

Query: 121 KKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYI 180
           KK KKVK VGNCSR KKLKI+YE RKLPT+QRKVRTL RLVPGCRKISFPNLLEE SDYI
Sbjct: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182

Query: 181 AALQMQVRAMTAVAELLAGAPTDRQSFRTNS 210
           +ALQMQVRAMTAVAELLAGAP DRQS RTNS
Sbjct: 183 SALQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of Lsi06G000520 vs. TrEMBL
Match: M5W049_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011502mg PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 103/201 (51.24%), Postives = 133/201 (66.17%), Query Frame = 1 

Query: 3   AIASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLV 62
           ++ SN+     +   E    KRRKI     A E     + +   RWR+E+EQRIYS+KLV
Sbjct: 4   SLISNVDGSLDASLIESSRKKRRKIG----AVESDRNPTTNTGARWRSETEQRIYSTKLV 63

Query: 63  DALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHK 122
           +AL +   + S +   + S  GR+V++ ADRVLA AAKG TRWSRAIL  RL L  K HK
Sbjct: 64  EALRQARQRSSRAA--KVSGGGREVKKAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHK 123

Query: 123 K--VKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAA 182
           +   +  GN +R KK ++R E RK P ++RKVR L RLVPGCRK S PNLLEETSDYI+A
Sbjct: 124 RRTARVTGN-NRLKKAEVRREGRKSPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISA 183

Query: 183 LQMQVRAMTAVAELLAGAPTD 202
           L+MQVRAM A+ ELL+G+P +
Sbjct: 184 LEMQVRAMAALTELLSGSPVN 197

[Close]
BLAST of Lsi06G000520 vs. TrEMBL
Match: A0A061FB51_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_026779 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 8.3e-38
Identity = 110/216 (50.93%), Postives = 146/216 (67.59%), Query Frame = 1 

Query: 1   MDAIASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSK 60
           M ++  NL+   S D + +   K+R+ +++         + +   +RWRTE EQ+IYSSK
Sbjct: 1   MASLIPNLE--HSPDMSPEFKRKKRR-KTDETPGPFDRNQGSQRIKRWRTEREQQIYSSK 60

Query: 61  LVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLEL---K 120
           L++AL R + + S+S P       ++VRETADRVLAV+AKG  RWSRAIL +RL +    
Sbjct: 61  LIEALRR-SRRTSSSTP------AKEVRETADRVLAVSAKGTMRWSRAILASRLGVGAKT 120

Query: 121 LKKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDY 180
           ++KHKK K   N S  +K +I+ E RKLP ++RK++ LGRLVPG RK+SF NLLEETSDY
Sbjct: 121 MRKHKKAKVTANRSL-RKPEIKGEKRKLPAVERKLKVLGRLVPGGRKLSFSNLLEETSDY 180

Query: 181 IAALQMQVRAMTAVAELLAGA----PTDRQSFRTNS 210
           IAAL+MQVRAMTA+ ELLAGA    PTDR   R NS
Sbjct: 181 IAALEMQVRAMTAITELLAGAGTQPPTDRLGSRINS 205

[Close]
BLAST of Lsi06G000520 vs. TrEMBL
Match: F6H714_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00750 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 99/194 (51.03%), Postives = 130/194 (67.01%), Query Frame = 1 

Query: 20  RPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPR 79
           R S +RK + +NQ       +      +W+++ +Q++YSSKL+ AL +V    S   P R
Sbjct: 17  RESSKRKKKKKNQIQSQVRDQQNQNHTKWKSQVQQQLYSSKLLQALRQVRLGSSNETPRR 76

Query: 80  TSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKVK-PVGNCSRPKKLKI 139
               GR VRE ADR LAVAAKG+TRWSRAILTNRL+LK  KHK+ +  V   +R KK K+
Sbjct: 77  ----GRAVREAADRALAVAAKGRTRWSRAILTNRLKLKFMKHKRQRVTVTGQNRSKKPKV 136

Query: 140 ---RYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELL 199
              R + + LP +QRKVR LGRLVPGCRK+  P++LEE +DYIAAL+MQVRAMTA+ ELL
Sbjct: 137 SILRLKGKNLPAVQRKVRVLGRLVPGCRKLPLPDILEEATDYIAALEMQVRAMTALTELL 196

Query: 200 AGAPTDRQSFRTNS 210
           +GA     +  +NS
Sbjct: 197 SGAGAGASTTSSNS 206

[Close]
BLAST of Lsi06G000520 vs. TrEMBL
Match: A5AMF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026724 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 1 

Query: 18  EQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIP 77
           E    KR+K+ES +Q  +           RWRTE+EQ+IYS+KLV+A+ +V   + +S P
Sbjct: 18  ESNRRKRKKMESGSQKVK--------RGGRWRTEAEQQIYSAKLVEAITKV---RRSSAP 77

Query: 78  PRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKVKPVGNCSRPKKLK 137
                 GR VRE ADRVLA A KG+TRWSRAI+T+R+ L+L+K +KV   GN     +L+
Sbjct: 78  AAAVHRGRAVREAADRVLAAAGKGRTRWSRAIMTSRVGLRLRKRRKVTVTGN----NRLR 137

Query: 138 IRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELLAG 197
               +++ P ++R+VR LGRLVPGCRK+SFPNLLEE +DYIAAL+MQVRAMTA+AELLAG
Sbjct: 138 KPAVSKQEPPLKRRVRVLGRLVPGCRKLSFPNLLEEATDYIAALEMQVRAMTALAELLAG 182

[Close]
BLAST of Lsi06G000520 vs. TAIR10
Match: AT1G09250.1 (AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 97/186 (52.15%), Postives = 125/186 (67.20%), Query Frame = 1 

Query: 22  SKRRKIE-SENQAAEICVAE-SADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPR 81
           S+R+K   SE   AEI     + +  +RW+T   Q+IY+ KLV+AL RV  + S +    
Sbjct: 16  SRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNE 75

Query: 82  T----SMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKV-KPVGNCSRPK 141
           T    S   R++R+TADRVLA +A+G TRWSRAIL +R+  KLKKH+K  K  GNC   K
Sbjct: 76  TDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRK 135

Query: 142 KLKIRYETR--KLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVA 199
            L    ET   KLP ++RK++ LGRLVPGCRK+S PNLL+E +DYIAAL+MQVRAM A+A
Sbjct: 136 GLT---ETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALA 195

[Close]
BLAST of Lsi06G000520 vs. TAIR10
Match: AT3G17100.1 (AT3G17100.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 89/210 (42.38%), Postives = 131/210 (62.38%), Query Frame = 1 

Query: 4   IASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVD 63
           +++ L    ++     R  ++RK +S   + E   + S  L + WR+E +Q+IYS+KLV 
Sbjct: 7   VSNQLLQPTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEK-WRSEKQQQIYSTKLVH 66

Query: 64  ALH--RVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKH 123
           AL   R++ Q S+S        GR VRE ADR LAVAA+GKT WSRAIL+  ++LK +KH
Sbjct: 67  ALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKH 126

Query: 124 KKVKPVGNCS---------RPKKLK---IRYETRKLPTMQRKVRTLGRLVPGCRKISFPN 183
           K+ + + N +         R KK +   +R + + LP +QRKV+ L RLVPGCRK S P 
Sbjct: 127 KRQR-ISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPV 186

Query: 184 LLEETSDYIAALQMQVRAMTAVAELLAGAP 200
           +LEET+DYIAA++MQ+R MTA+   ++ +P
Sbjct: 187 VLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]
BLAST of Lsi06G000520 vs. TAIR10
Match: AT3G06590.1 (AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-33
Identity = 89/212 (41.98%), Postives = 125/212 (58.96%), Query Frame = 1 

Query: 4   IASNLQDLRSSDFTEQRPSKRRKIESENQAAEI---CVAESADLRRRWRTESEQRIYSSK 63
           +AS + D+     T     +R+K  S + AA       + S ++  RWR+E +QRIYS+K
Sbjct: 1   MASLISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYSAK 60

Query: 64  LVDALHRVTTQKSASIP--PRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKL 123
           L  AL +V    SAS    P     G+ VRE ADR LAV+A+G+T WSRAIL NR++LK 
Sbjct: 61  LFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKF 120

Query: 124 KKHKK-------------VKPVGNCSRPKKLKI-RYETRKLPTMQRKVRTLGRLVPGCRK 183
           +K ++             V    N SR +++ + R   + +P + RKVR LGRLVPGC K
Sbjct: 121 RKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGK 180

Query: 184 ISFPNLLEETSDYIAALQMQVRAMTAVAELLA 197
            S P +LEE +DYI AL+MQVRAM ++ +LL+
Sbjct: 181 QSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of Lsi06G000520 vs. TAIR10
Match: AT3G05800.1 (AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-26
Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 23  KRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQKSASIPPRTSM 82
           +R ++ SE        A    L RRWR  + Q++YS KL DAL R  +++SA+       
Sbjct: 45  RRSRVSSEE-------APVRHLSRRWRATTAQKVYSLKLYDALQR--SRRSAT------- 104

Query: 83  DGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHKKVKPVGNCSRP-KKLKIRYE 142
               VR+TAD+VLA  A+G TRWSRAIL +R    L++ +  KP    +   +       
Sbjct: 105 ----VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGR 164

Query: 143 TRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELLA 197
            RKL  +  +VR LG LVPGCR+ + P LL+ET+DYIAAL+MQVRAMTA++++L+
Sbjct: 165 RRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of Lsi06G000520 vs. NCBI nr
Match: gi|449435946|ref|XP_004135755.1| (PREDICTED: transcription factor bHLH149-like [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-79
Identity = 174/211 (82.46%), Postives = 182/211 (86.26%), Query Frame = 1 

Query: 1   MDAIASNLQDLRSSDFTE-QRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSS 60
           MD I+SNLQ L SSDFTE QRPSKRRKI S     EI V ESAD  RRW TESE RIYSS
Sbjct: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62

Query: 61  KLVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTN-RLELKL 120
           KLVDALHRVT QKSAS+P  +S+DGRKVRETADRVLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122

Query: 121 KKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYI 180
           KK KKVK VGNCSR KKLKI+YE RKLPT+QRKVRTL RLVPGCRKISFPNLLEE SDYI
Sbjct: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182

Query: 181 AALQMQVRAMTAVAELLAGAPTDRQSFRTNS 210
           +ALQMQVRAMTAVAELLAGAP DRQS RTNS
Sbjct: 183 SALQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of Lsi06G000520 vs. NCBI nr
Match: gi|659099312|ref|XP_008450537.1| (PREDICTED: transcription factor bHLH149-like [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.4e-78
Identity = 170/211 (80.57%), Postives = 180/211 (85.31%), Query Frame = 1 

Query: 1   MDAIASNLQDLRSSDFTE-QRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSS 60
           MD I+SNLQ L SS FTE  RP+KRRKI    Q+ EI V ESAD R RW TESE RIYSS
Sbjct: 5   MDPISSNLQHLTSSHFTEDHRPTKRRKI----QSPEISVDESADSRTRWTTESEHRIYSS 64

Query: 61  KLVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTN-RLELKL 120
           KLVDALHRVT  KS S+P R+S+DGRKVRETADRVLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 65  KLVDALHRVTAHKSTSLPSRSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQRKL 124

Query: 121 KKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYI 180
           KK KKVK VGNCSR KKLKI+YETRKLPT+QRKVRTLGRLVPGCRKISFPNLLEE SDYI
Sbjct: 125 KKQKKVKTVGNCSRAKKLKIKYETRKLPTVQRKVRTLGRLVPGCRKISFPNLLEEASDYI 184

Query: 181 AALQMQVRAMTAVAELLAGAPTDRQSFRTNS 210
           +ALQMQVRAMTAVAELL GAP D QS RTNS
Sbjct: 185 SALQMQVRAMTAVAELLGGAPVDLQSLRTNS 211

[Close]
BLAST of Lsi06G000520 vs. NCBI nr
Match: gi|1009116651|ref|XP_015874890.1| (PREDICTED: transcription factor bHLH149 [Ziziphus jujuba])

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 110/201 (54.73%), Postives = 130/201 (64.68%), Query Frame = 1 

Query: 1   MDAIASNLQDLRSSDFTEQRPSKRRKIE--SENQAAEICVAESADLRRRWRTESEQRIYS 60
           M +  SNL+    +     R  KRRKIE  S  Q   +    S     RWR+++EQ IYS
Sbjct: 1   MASFISNLESNLDASIDSNR-KKRRKIEGLSTEQRPSL---NSETRTTRWRSDTEQLIYS 60

Query: 61  SKLVDALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKL 120
           SKLV AL +  T  S   P       R+VR+TADRVLA+AAKG TRWSRAIL +RL L  
Sbjct: 61  SKLVQALRQARTNSS---PAEKFSGTRRVRDTADRVLALAAKGTTRWSRAILASRLRLNR 120

Query: 121 KKHKKVKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYI 180
             HK+       SRP +L  + E RKLP MQ+KV+ LGRLVPGCRK+SFPNLLEE SDYI
Sbjct: 121 NLHKRKHRKAKVSRPNRLP-KTEMRKLPPMQKKVQVLGRLVPGCRKLSFPNLLEEASDYI 180

Query: 181 AALQMQVRAMTAVAELLAGAP 200
           AAL+MQVRAMTA+ ELLAG P
Sbjct: 181 AALEMQVRAMTALTELLAGTP 193

[Close]
BLAST of Lsi06G000520 vs. NCBI nr
Match: gi|645221730|ref|XP_008246092.1| (PREDICTED: transcription factor bHLH149 [Prunus mume])

HSP 1 Score: 167.2 bits (422), Expect = 3.1e-38
Identity = 104/201 (51.74%), Postives = 133/201 (66.17%), Query Frame = 1 

Query: 3   AIASNLQDLRSSDFTEQRPSKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLV 62
           ++ SN+     +   E    KRRKI     A E     + +   RWR+E+EQRIYS+KLV
Sbjct: 4   SLISNVDGSLDASLIESSRKKRRKIG----AVESDRNPTTNTGARWRSETEQRIYSTKLV 63

Query: 63  DALHRVTTQKSASIPPRTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHK 122
           +AL +   + S +   + S  GR+V+E ADRVLA AAKG TRWSRAIL  RL L  K HK
Sbjct: 64  EALRQARQRSSRAA--KVSGGGREVKEAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHK 123

Query: 123 K--VKPVGNCSRPKKLKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAA 182
           +   +  GN +R KK ++R   RKLP ++RKVR L RLVPGCRK S PNLLEETSDYI+A
Sbjct: 124 RRTARVTGN-NRLKKAEVRRVGRKLPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISA 183

Query: 183 LQMQVRAMTAVAELLAGAPTD 202
           L+MQVRAM A+ ELL+G+P +
Sbjct: 184 LEMQVRAMAALTELLSGSPVN 197

[Close]
BLAST of Lsi06G000520 vs. NCBI nr
Match: gi|720038263|ref|XP_010267936.1| (PREDICTED: transcription factor bHLH147-like [Nelumbo nucifera])

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 100/186 (53.76%), Postives = 129/186 (69.35%), Query Frame = 1 

Query: 22  SKRRKIESENQAAEICVAESADLRRRWRTESEQRIYSSKLVDALHRVTTQK---SASIPP 81
           S  R +ES+ +  +    ++ +   RW+T +EQ+ YSSKL++AL +V   +   S   PP
Sbjct: 12  SSDRSLESKKKKRKKTANQNPEDPTRWKTRAEQQTYSSKLLEALRQVRRNQPPASPEAPP 71

Query: 82  RTSMDGRKVRETADRVLAVAAKGKTRWSRAILTNRLELKLKKHK-KVKPVGNC--SRPKK 141
           R    GR VRE ADRVLAVAAKG+TRWSRAILT RL+LKL+K K +V   GNC   +P  
Sbjct: 72  R----GRAVREAADRVLAVAAKGRTRWSRAILTGRLKLKLRKKKPRVAVAGNCRSKKPGA 131

Query: 142 LKIRYETRKLPTMQRKVRTLGRLVPGCRKISFPNLLEETSDYIAALQMQVRAMTAVAELL 201
             IR + ++LP +QR+VR LG LVPGCRK+SFP LLEE +DYIAAL+MQVRAMTA+ ELL
Sbjct: 132 SIIRLKEKRLPALQRRVRVLGGLVPGCRKLSFPELLEEATDYIAALEMQVRAMTALTELL 191

The following BLAST results are available for this feature:
BLAST of Lsi06G000520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH149_ARATH1.9e-3552.15Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1[more]
BH147_ARATH2.0e-3242.38Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1[more]
BH148_ARATH1.3e-3141.98Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1[more]
BH150_ARATH5.2e-2542.86Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1[more]
BLAST of Lsi06G000520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVP8_CUCSA8.8e-8082.46Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1[more]
M5W049_PRUPE4.9e-3851.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011502mg PE=4 SV=1[more]
A0A061FB51_THECC8.3e-3850.93Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
F6H714_VITVI1.1e-3751.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00750 PE=4 SV=... [more]
A5AMF3_VITVI2.4e-3753.89Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026724 PE=4 SV=1[more]
BLAST of Lsi06G000520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09250.11.1e-3652.15 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G17100.11.1e-3342.38 sequence-specific DNA binding transcription factors[more]
AT3G06590.17.2e-3341.98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G05800.12.9e-2642.86 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1[more]
BLAST of Lsi06G000520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435946|ref|XP_004135755.1|1.3e-7982.46PREDICTED: transcription factor bHLH149-like [Cucumis sativus][more]
gi|659099312|ref|XP_008450537.1|1.4e-7880.57PREDICTED: transcription factor bHLH149-like [Cucumis melo][more]
gi|1009116651|ref|XP_015874890.1|2.2e-3954.73PREDICTED: transcription factor bHLH149 [Ziziphus jujuba][more]
gi|645221730|ref|XP_008246092.1|3.1e-3851.74PREDICTED: transcription factor bHLH149 [Prunus mume][more]
gi|720038263|ref|XP_010267936.1|7.0e-3853.76PREDICTED: transcription factor bHLH147-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G000520.1Lsi06G000520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 147..193
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 132..181
score: 8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 134..197
score: 1.9
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 19..209
score: 4.4
NoneNo IPR availablePANTHERPTHR33124:SF12TRANSCRIPTION FACTOR BHLH147-RELATEDcoord: 19..209
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi06G000520Csa2G034620Cucumber (Chinese Long) v2culsiB136
Lsi06G000520Csa1G555600Cucumber (Chinese Long) v2culsiB075
Lsi06G000520CSPI02G04790Wild cucumber (PI 183967)cpilsiB134
Lsi06G000520CSPI01G25490Wild cucumber (PI 183967)cpilsiB076
Lsi06G000520Cucsa.050790Cucumber (Gy14) v1cgylsiB035
Lsi06G000520Cucsa.090560Cucumber (Gy14) v1cgylsiB101
Lsi06G000520CmaCh10G011640Cucurbita maxima (Rimu)cmalsiB076
Lsi06G000520CmaCh05G010680Cucurbita maxima (Rimu)cmalsiB734
Lsi06G000520CmoCh10G012420Cucurbita moschata (Rifu)cmolsiB062
Lsi06G000520CmoCh05G010780Cucurbita moschata (Rifu)cmolsiB723
Lsi06G000520Cla005156Watermelon (97103) v1lsiwmB396
Lsi06G000520Cla019979Watermelon (97103) v1lsiwmB409
Lsi06G000520MELO3C015253Melon (DHL92) v3.5.1lsimeB396
Lsi06G000520ClCG02G014830Watermelon (Charleston Gray)lsiwcgB359
Lsi06G000520ClCG03G017760Watermelon (Charleston Gray)lsiwcgB364
Lsi06G000520MELO3C015253.2Melon (DHL92) v3.6.1lsimedB418
Lsi06G000520Cla97C03G068160Watermelon (97103) v2lsiwmbB365
Lsi06G000520Bhi02G001823Wax gourdlsiwgoB522
Lsi06G000520Cp4.1LG07g08560Cucurbita pepo (Zucchini)cpelsiB682
Lsi06G000520Cp4.1LG18g00210Cucurbita pepo (Zucchini)cpelsiB302
Lsi06G000520Cp4.1LG11g08680Cucurbita pepo (Zucchini)cpelsiB095
Lsi06G000520CsaV3_1G037910Cucumber (Chinese Long) v3cuclsiB086
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi06G000520Lsi11G006440Bottle gourd (USVL1VR-Ls)lsilsiB060
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi06G000520Cucumber (Gy14) v1cgylsiB033
Lsi06G000520Cucurbita maxima (Rimu)cmalsiB133
Lsi06G000520Cucurbita maxima (Rimu)cmalsiB142
Lsi06G000520Cucurbita moschata (Rifu)cmolsiB122
Lsi06G000520Cucurbita pepo (Zucchini)cpelsiB560
Lsi06G000520Wild cucumber (PI 183967)cpilsiB059
Lsi06G000520Cucumber (Chinese Long) v2culsiB058
Lsi06G000520Cucumber (Gy14) v2cgyblsiB055
Lsi06G000520Cucumber (Gy14) v2cgyblsiB073
Lsi06G000520Cucumber (Chinese Long) v3cuclsiB068