Csa1G555600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G555600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription factor, putative; contains IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)
LocationChr1 : 20293785 .. 20294948 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTCTCTCTCTTTTCCTCCATTAACAACCTTTCTTAAGCTTTCCTTAACCATTCCTCTTTCCTGAGGTATTTTCTCTCTTCCATTTCCATTTCACCTTTTCCTTTCTTTTACCATTTTCGCTAATTATCAATTCCCTTCATCCCAACTTCTCTAATTAATTCCTTCTCCAAATTCTATTTTTTCCTTTGCAGATTCTTCTTGTATTCATCTCATACTGCTTCTCTATTGCTGGATTCATTTCTTGAAATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAGAAGCCACTCCCCAAGGCTTGTAATGCCAGCAGGTGTTTTCTTCTTTTTTTTTTCTTTTTCTTTTTTTCTTTTTCTTTTATATATATAATCTTTCTTCTTTTTTTCTTTTCACGAATATTATTATTCGTGTATTGTTATGAAATATTTTATTGTACACATTTTTAATTTCCATTTCTTTCTTTCTTTTTGGGTTTAATTTTTTGATTGAAAAGTAGTACCTAATTTTGATTCTCTTAATATAATAAGAGAAAGATAATAGATGGAATTAGGGAATTAGGTTTTGGT

mRNA sequence

ATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAG

Coding sequence (CDS)

ATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAG

Protein sequence

MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLAGAPGDRQSLRTNS*
Homology
[Close]
BLAST of Csa1G555600 vs. Swiss-Prot
Match: BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.7e-37
Identity = 93/190 (48.95%), Postives = 125/190 (65.79%), Query Frame = 1 

Query: 20  EDQRPSKRRKIHSPEISVDE---SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSAS-- 79
           E  R  K R   + E  ++    + +S++RW T    +IY+ KLV+AL RV  + S +  
Sbjct: 14  ESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSN 73

Query: 80  -----LPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVK-TVG 139
                L SG++   R++R+TADRVLA +A+G TRWSRAIL + R++ KLKK +K K + G
Sbjct: 74  NETDKLVSGAA---REIRDTADRVLAASARGTTRWSRAILAS-RVRAKLKKHRKAKKSTG 133

Query: 140 NCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAM 199
           NC   K L  +  R KLP V+RK++ L RLVPGCRK+S PNLL+EA+DYI+AL+MQVRAM
Sbjct: 134 NCKSRKGLT-ETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 193

[Close]
BLAST of Csa1G555600 vs. Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 91/213 (42.72%), Postives = 133/213 (62.44%), Query Frame = 1 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESAD---SIRRWTTESEHRIYSSK 62
           + P+S+ L   T++    D+   KR+K  SP  SV++S     S+ +W +E + +IYS+K
Sbjct: 4   ISPVSNQLLQPTTTSSNSDRSRRKRKKKSSPS-SVEKSPSPSISLEKWRSEKQQQIYSTK 63

Query: 63  LVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTRWSRAILTNP-RLQH 122
           LV AL  +   +  S  S SSI   GR VRE ADR LAVAA+GKT WSRAIL+   +L+ 
Sbjct: 64  LVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKF 123

Query: 123 KLKKQKKVK-------TVGNCSRAKKLK---IKYERRKLPTVQRKVRTLSRLVPGCRKIS 182
           +  K++++        T G+  R+KK +   ++ + + LP VQRKV+ LSRLVPGCRK S
Sbjct: 124 RKHKRQRISNPTTTTLTTGSI-RSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQS 183

Query: 183 FPNLLEEASDYISALQMQVRAMTAVAELLAGAP 200
            P +LEE +DYI+A++MQ+R MTA+   ++ +P
Sbjct: 184 LPVVLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]
BLAST of Csa1G555600 vs. Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 90/215 (41.86%), Postives = 125/215 (58.14%), Query Frame = 1 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIR-----RWTTESEHRIYS 62
           M  + S+++  TS+  T D    K+R   S   S   SA S+      RW +E + RIYS
Sbjct: 1   MASLISDIEPPTST--TSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYS 60

Query: 63  SKLVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTRWSRAILTNPRLQ 122
           +KL  AL +V    SAS  S  +    G+ VRE ADR LAV+A+G+T WSRAIL N R++
Sbjct: 61  AKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-RIK 120

Query: 123 HKLKKQKK-------------VKTVGNCSRAKKLKI-KYERRKLPTVQRKVRTLSRLVPG 182
            K +KQ++             V +  N SR +++ + +  ++ +P V RKVR L RLVPG
Sbjct: 121 LKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPG 180

Query: 183 CRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           C K S P +LEEA+DYI AL+MQVRAM ++ +LL+
Sbjct: 181 CGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of Csa1G555600 vs. Swiss-Prot
Match: BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 71/172 (41.28%), Postives = 103/172 (59.88%), Query Frame = 1 

Query: 26  KRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRK 85
           +R ++ S E  V   +   RRW   +  ++YS KL DAL R  +++SA+           
Sbjct: 45  RRSRVSSEEAPVRHLS---RRWRATTAQKVYSLKLYDALQR--SRRSAT----------- 104

Query: 86  VRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRA-KKLKIKYERRK 145
           VR+TAD+VLA  A+G TRWSRAIL + R    L++++  K     + A +       RRK
Sbjct: 105 VRDTADKVLATTARGATRWSRAILVS-RFGTSLRRRRNTKPASALAAAIRGSGGSGRRRK 164

Query: 146 LPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  V  +VR L  LVPGCR+ + P LL+E +DYI+AL+MQVRAMTA++++L+
Sbjct: 165 LSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of Csa1G555600 vs. Swiss-Prot
Match: IBH1_ARATH (Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 1 

Query: 40  SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAK 99
           SAD +   T   E  +++   + +L  +  Q     P   +   RK+++ A   +A AA 
Sbjct: 3   SADKLIN-TDVPEKDVFAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKKAAYVSMARAAG 62

Query: 100 GKTR-WSRAILTNPRLQHKLKKQKKVKTVGNCSRAKKLKIKYERRK----LPTVQRKVRT 159
           G +R WSRA+L         +  K    +   SR +K KI  +RR+     P V+     
Sbjct: 63  GSSRLWSRALLR--------RADKDDNKIVRFSR-RKWKISSKRRRSNQRAPVVEEAAER 122

Query: 160 LSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  LVPG   +    L+EE + YI  L MQV+ M  + + L+
Sbjct: 123 LRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGLS 154

[Close]
BLAST of Csa1G555600 vs. TrEMBL
Match: A0A0A0LVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 1.3e-110
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL
Sbjct: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK
Sbjct: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA
Sbjct: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELLAGAPGDRQSLRTNS
Sbjct: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of Csa1G555600 vs. TrEMBL
Match: M5W049_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011502mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.5e-42
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 8   SNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRV 67
           SN+     +   E  R  KRRKI + E   + + ++  RW +E+E RIYS+KLV+AL + 
Sbjct: 7   SNVDGSLDASLIESSR-KKRRKIGAVESDRNPTTNTGARWRSETEQRIYSTKLVEALRQ- 66

Query: 68  TAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAIL-TNPRLQHKLKKQKKVKT 127
            A++ +S  +  S  GR+V++ ADRVLA AAKG TRWSRAIL T  RL  KL K++  + 
Sbjct: 67  -ARQRSSRAAKVSGGGREVKKAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHKRRTARV 126

Query: 128 VGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVR 187
            GN +R KK +++ E RK P V+RKVR LSRLVPGCRK S PNLLEE SDYISAL+MQVR
Sbjct: 127 TGN-NRLKKAEVRREGRKSPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISALEMQVR 186

Query: 188 AMTAVAELLAGAP 200
           AM A+ ELL+G+P
Sbjct: 187 AMAALTELLSGSP 195

[Close]
BLAST of Csa1G555600 vs. TrEMBL
Match: A0A061FB51_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_026779 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 111/216 (51.39%), Postives = 138/216 (63.89%), Query Frame = 1 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADS--IRRWTTESEHRIYSSKL 62
           M  +  NL+H  S D + + +  KRRK        D +  S  I+RW TE E +IYSSKL
Sbjct: 1   MASLIPNLEH--SPDMSPEFKRKKRRKTDETPGPFDRNQGSQRIKRWRTEREQQIYSSKL 60

Query: 63  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRL---QHK 122
           ++AL R       S  + SS   ++VRETADRVLAV+AKG  RWSRAIL + RL      
Sbjct: 61  IEALRR-------SRRTSSSTPAKEVRETADRVLAVSAKGTMRWSRAILAS-RLGVGAKT 120

Query: 123 LKKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDY 182
           ++K KK K   N S  +K +IK E+RKLP V+RK++ L RLVPG RK+SF NLLEE SDY
Sbjct: 121 MRKHKKAKVTANRS-LRKPEIKGEKRKLPAVERKLKVLGRLVPGGRKLSFSNLLEETSDY 180

Query: 183 ISALQMQVRAMTAVAELLAGA----PGDRQSLRTNS 210
           I+AL+MQVRAMTA+ ELLAGA    P DR   R NS
Sbjct: 181 IAALEMQVRAMTAITELLAGAGTQPPTDRLGSRINS 205

[Close]
BLAST of Csa1G555600 vs. TrEMBL
Match: I1NEY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G096100 PE=4 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 5.8e-39
Identity = 97/188 (51.60%), Postives = 128/188 (68.09%), Query Frame = 1 

Query: 14  TSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKSA 73
           ++SD   +    KRRKI     + D+++ +   W +E E RIYS +LV+AL R  +  SA
Sbjct: 11  SNSDTLRESNHKKRRKI-GDHAAADQNSAAASPWRSEEEQRIYSRRLVEALRRTAS--SA 70

Query: 74  SLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTN---PRLQHKLKKQKKVKTVGNC 133
           + P  +     +VRETADRVLA  A+G+TRWSRAIL+     R QHK  K+K+  ++ NC
Sbjct: 71  AKPRAAG----QVRETADRVLAATARGRTRWSRAILSRWRKLRTQHKKAKKKEASSI-NC 130

Query: 134 SRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTA 193
            +  ++     R +LP VQ+K R LSRLVPGCRK+SFPNLLEEA+DYISAL+MQVRAMTA
Sbjct: 131 LKRTRIGNGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTA 190

Query: 194 VAELLAGA 199
           +AELLA A
Sbjct: 191 LAELLAVA 190

[Close]
BLAST of Csa1G555600 vs. TrEMBL
Match: D7KJN4_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471014 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.8e-38
Identity = 95/187 (50.80%), Postives = 131/187 (70.05%), Query Frame = 1 

Query: 19  TEDQRPSKRRKIHSPEISVDESA----DSIRRWTTESEHRIYSSKLVDALHRVTAQKSAS 78
           +E    S+R+K    E++  ES     +S++RW T    +IY+SKLV+AL RV  + S S
Sbjct: 5   SESSPESRRKKPRISEMAEIESRRINEESLKRWKTNRVQQIYASKLVEALRRVRQRSSTS 64

Query: 79  LPSGSSIDG--RKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVK-TVGNCS 138
             +   + G  R++RETADRVLA +A+G TRWSRAIL + R++ KLKK +K K + GNC 
Sbjct: 65  TETDKVVSGAAREIRETADRVLAASARGTTRWSRAILAS-RVRAKLKKHRKAKKSTGNC- 124

Query: 139 RAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAV 198
           +++K   +  R KLP V+RK++ L RLVPGCRK+S PNLL+EA+DYI+AL+MQVRAM A+
Sbjct: 125 KSRKGVTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEAL 184

[Close]
BLAST of Csa1G555600 vs. TAIR10
Match: AT1G09250.1 (AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 93/190 (48.95%), Postives = 125/190 (65.79%), Query Frame = 1 

Query: 20  EDQRPSKRRKIHSPEISVDE---SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSAS-- 79
           E  R  K R   + E  ++    + +S++RW T    +IY+ KLV+AL RV  + S +  
Sbjct: 14  ESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSN 73

Query: 80  -----LPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVK-TVG 139
                L SG++   R++R+TADRVLA +A+G TRWSRAIL + R++ KLKK +K K + G
Sbjct: 74  NETDKLVSGAA---REIRDTADRVLAASARGTTRWSRAILAS-RVRAKLKKHRKAKKSTG 133

Query: 140 NCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAM 199
           NC   K L  +  R KLP V+RK++ L RLVPGCRK+S PNLL+EA+DYI+AL+MQVRAM
Sbjct: 134 NCKSRKGLT-ETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 193

[Close]
BLAST of Csa1G555600 vs. TAIR10
Match: AT3G17100.1 (AT3G17100.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 91/213 (42.72%), Postives = 133/213 (62.44%), Query Frame = 1 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESAD---SIRRWTTESEHRIYSSK 62
           + P+S+ L   T++    D+   KR+K  SP  SV++S     S+ +W +E + +IYS+K
Sbjct: 4   ISPVSNQLLQPTTTSSNSDRSRRKRKKKSSPS-SVEKSPSPSISLEKWRSEKQQQIYSTK 63

Query: 63  LVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTRWSRAILTNP-RLQH 122
           LV AL  +   +  S  S SSI   GR VRE ADR LAVAA+GKT WSRAIL+   +L+ 
Sbjct: 64  LVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKF 123

Query: 123 KLKKQKKVK-------TVGNCSRAKKLK---IKYERRKLPTVQRKVRTLSRLVPGCRKIS 182
           +  K++++        T G+  R+KK +   ++ + + LP VQRKV+ LSRLVPGCRK S
Sbjct: 124 RKHKRQRISNPTTTTLTTGSI-RSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQS 183

Query: 183 FPNLLEEASDYISALQMQVRAMTAVAELLAGAP 200
            P +LEE +DYI+A++MQ+R MTA+   ++ +P
Sbjct: 184 LPVVLEETTDYIAAMEMQIRTMTAILSAVSSSP 214

[Close]
BLAST of Csa1G555600 vs. TAIR10
Match: AT3G06590.1 (AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 90/215 (41.86%), Postives = 125/215 (58.14%), Query Frame = 1 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIR-----RWTTESEHRIYS 62
           M  + S+++  TS+  T D    K+R   S   S   SA S+      RW +E + RIYS
Sbjct: 1   MASLISDIEPPTST--TSDLVRRKKRSSASSAASSRSSASSVSGEIHARWRSEKQQRIYS 60

Query: 63  SKLVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTRWSRAILTNPRLQ 122
           +KL  AL +V    SAS  S  +    G+ VRE ADR LAV+A+G+T WSRAIL N R++
Sbjct: 61  AKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILAN-RIK 120

Query: 123 HKLKKQKK-------------VKTVGNCSRAKKLKI-KYERRKLPTVQRKVRTLSRLVPG 182
            K +KQ++             V +  N SR +++ + +  ++ +P V RKVR L RLVPG
Sbjct: 121 LKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPG 180

Query: 183 CRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           C K S P +LEEA+DYI AL+MQVRAM ++ +LL+
Sbjct: 181 CGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of Csa1G555600 vs. TAIR10
Match: AT3G05800.1 (AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 114.4 bits (285), Expect = 8.6e-26
Identity = 71/172 (41.28%), Postives = 103/172 (59.88%), Query Frame = 1 

Query: 26  KRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRK 85
           +R ++ S E  V   +   RRW   +  ++YS KL DAL R  +++SA+           
Sbjct: 45  RRSRVSSEEAPVRHLS---RRWRATTAQKVYSLKLYDALQR--SRRSAT----------- 104

Query: 86  VRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRA-KKLKIKYERRK 145
           VR+TAD+VLA  A+G TRWSRAIL + R    L++++  K     + A +       RRK
Sbjct: 105 VRDTADKVLATTARGATRWSRAILVS-RFGTSLRRRRNTKPASALAAAIRGSGGSGRRRK 164

Query: 146 LPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  V  +VR L  LVPGCR+ + P LL+E +DYI+AL+MQVRAMTA++++L+
Sbjct: 165 LSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of Csa1G555600 vs. TAIR10
Match: AT2G43060.1 (AT2G43060.1 ILI1 binding bHLH 1)

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-08
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 1 

Query: 40  SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAK 99
           SAD +   T   E  +++   + +L  +  Q     P   +   RK+++ A   +A AA 
Sbjct: 3   SADKLIN-TDVPEKDVFAFHFLQSLSNLRKQNPFDTPDQKNYRVRKIKKAAYVSMARAAG 62

Query: 100 GKTR-WSRAILTNPRLQHKLKKQKKVKTVGNCSRAKKLKIKYERRK----LPTVQRKVRT 159
           G +R WSRA+L         +  K    +   SR +K KI  +RR+     P V+     
Sbjct: 63  GSSRLWSRALLR--------RADKDDNKIVRFSR-RKWKISSKRRRSNQRAPVVEEAAER 122

Query: 160 LSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  LVPG   +    L+EE + YI  L MQV+ M  + + L+
Sbjct: 123 LRNLVPGGGGMETSKLMEETAHYIKCLSMQVKVMQCLVDGLS 154

[Close]
BLAST of Csa1G555600 vs. NCBI nr
Match: gi|449435946|ref|XP_004135755.1| (PREDICTED: transcription factor bHLH149-like [Cucumis sativus])

HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-110
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL
Sbjct: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK
Sbjct: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA
Sbjct: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELLAGAPGDRQSLRTNS
Sbjct: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of Csa1G555600 vs. NCBI nr
Match: gi|659099312|ref|XP_008450537.1| (PREDICTED: transcription factor bHLH149-like [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 6.5e-100
Identity = 194/209 (92.82%), Postives = 195/209 (93.30%), Query Frame = 1 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSS FTED RP+KRRKI SPEISVDESADS  RWTTESEHRIYSSKL
Sbjct: 3   MDMDPISSNLQHLTSSHFTEDHRPTKRRKIQSPEISVDESADSRTRWTTESEHRIYSSKL 62

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTA KS SLPS SSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQ KLKK
Sbjct: 63  VDALHRVTAHKSTSLPSRSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQRKLKK 122

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYE RKLPTVQRKVRTL RLVPGCRKISFPNLLEEASDYISA
Sbjct: 123 QKKVKTVGNCSRAKKLKIKYETRKLPTVQRKVRTLGRLVPGCRKISFPNLLEEASDYISA 182

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELL GAP D QSLRTNS
Sbjct: 183 LQMQVRAMTAVAELLGGAPVDLQSLRTNS 211

[Close]
BLAST of Csa1G555600 vs. NCBI nr
Match: gi|645221730|ref|XP_008246092.1| (PREDICTED: transcription factor bHLH149 [Prunus mume])

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-42
Identity = 104/193 (53.89%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 8   SNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRV 67
           SN+     +   E  R  KRRKI + E   + + ++  RW +E+E RIYS+KLV+AL + 
Sbjct: 7   SNVDGSLDASLIESSR-KKRRKIGAVESDRNPTTNTGARWRSETEQRIYSTKLVEALRQ- 66

Query: 68  TAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAIL-TNPRLQHKLKKQKKVKT 127
            A++ +S  +  S  GR+V+E ADRVLA AAKG TRWSRAIL T  RL  KL K++  + 
Sbjct: 67  -ARQRSSRAAKVSGGGREVKEAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHKRRTARV 126

Query: 128 VGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVR 187
            GN +R KK +++   RKLP V+RKVR LSRLVPGCRK S PNLLEE SDYISAL+MQVR
Sbjct: 127 TGN-NRLKKAEVRRVGRKLPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISALEMQVR 186

Query: 188 AMTAVAELLAGAP 200
           AM A+ ELL+G+P
Sbjct: 187 AMAALTELLSGSP 195

[Close]
BLAST of Csa1G555600 vs. NCBI nr
Match: gi|595829641|ref|XP_007205908.1| (hypothetical protein PRUPE_ppa011502mg [Prunus persica])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 1 

Query: 8   SNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRV 67
           SN+     +   E  R  KRRKI + E   + + ++  RW +E+E RIYS+KLV+AL + 
Sbjct: 7   SNVDGSLDASLIESSR-KKRRKIGAVESDRNPTTNTGARWRSETEQRIYSTKLVEALRQ- 66

Query: 68  TAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAIL-TNPRLQHKLKKQKKVKT 127
            A++ +S  +  S  GR+V++ ADRVLA AAKG TRWSRAIL T  RL  KL K++  + 
Sbjct: 67  -ARQRSSRAAKVSGGGREVKKAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHKRRTARV 126

Query: 128 VGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVR 187
            GN +R KK +++ E RK P V+RKVR LSRLVPGCRK S PNLLEE SDYISAL+MQVR
Sbjct: 127 TGN-NRLKKAEVRREGRKSPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISALEMQVR 186

Query: 188 AMTAVAELLAGAP 200
           AM A+ ELL+G+P
Sbjct: 187 AMAALTELLSGSP 195

[Close]
BLAST of Csa1G555600 vs. NCBI nr
Match: gi|470132833|ref|XP_004302279.1| (PREDICTED: transcription factor bHLH147-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 99/198 (50.00%), Postives = 139/198 (70.20%), Query Frame = 1 

Query: 13  LTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKS 72
           +++ D + D    KRRK+   +   + SA +  RW +++E RIYS+KLV+AL +V    S
Sbjct: 6   VSNPDASLDSSRKKRRKLKDDQ---NPSATTQLRWRSDNEQRIYSTKLVEALQKVRQGPS 65

Query: 73  ASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNP-RLQHKLKKQKKVKTVGNCS 132
           +S P+ +   G+ V+E ADRVLA+AA+G TRWSRAILT+  R++ +L+K+KK    GN S
Sbjct: 66  SS-PTAAVSGGKTVKEAADRVLALAARGTTRWSRAILTSRLRMRKRLQKRKKATVSGN-S 125

Query: 133 RAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAV 192
           R ++ +++  R ++P VQRKV+ LSRLVPGCRK  FPNLLEE +DYI+ALQMQVRAMT +
Sbjct: 126 RCRRAEVR--RMRMPAVQRKVKILSRLVPGCRKAPFPNLLEETTDYIAALQMQVRAMTVL 185

Query: 193 AELLAGAPGDRQSLRTNS 210
            ELL+GAP     L + S
Sbjct: 186 TELLSGAPPAASRLNSAS 196

The following BLAST results are available for this feature:
BLAST of Csa1G555600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH149_ARATH2.7e-3748.95Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1[more]
BH147_ARATH3.3e-3542.72Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1[more]
BH148_ARATH3.4e-3241.86Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1[more]
BH150_ARATH1.5e-2441.28Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1[more]
IBH1_ARATH1.4e-0629.01Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1[more]
BLAST of Csa1G555600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVP8_CUCSA1.3e-110100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1[more]
M5W049_PRUPE9.5e-4253.37Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011502mg PE=4 SV=1[more]
A0A061FB51_THECC5.2e-4051.39Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
I1NEY4_SOYBN5.8e-3951.60Uncharacterized protein OS=Glycine max GN=GLYMA_20G096100 PE=4 SV=2[more]
D7KJN4_ARALL3.8e-3850.80Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata ... [more]
BLAST of Csa1G555600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09250.11.5e-3848.95 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G17100.11.8e-3642.72 sequence-specific DNA binding transcription factors[more]
AT3G06590.11.9e-3341.86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G05800.18.6e-2641.28 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1[more]
AT2G43060.18.1e-0829.01 ILI1 binding bHLH 1[more]
BLAST of Csa1G555600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435946|ref|XP_004135755.1|1.8e-110100.00PREDICTED: transcription factor bHLH149-like [Cucumis sativus][more]
gi|659099312|ref|XP_008450537.1|6.5e-10092.82PREDICTED: transcription factor bHLH149-like [Cucumis melo][more]
gi|645221730|ref|XP_008246092.1|6.1e-4253.89PREDICTED: transcription factor bHLH149 [Prunus mume][more]
gi|595829641|ref|XP_007205908.1|1.4e-4153.37hypothetical protein PRUPE_ppa011502mg [Prunus persica][more]
gi|470132833|ref|XP_004302279.1|2.6e-4050.00PREDICTED: transcription factor bHLH147-like [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088776cucumber EST collection version 3.0transcribed_cluster
CU115483cucumber EST collection version 3.0transcribed_cluster
CU119509cucumber EST collection version 3.0transcribed_cluster
CU141966cucumber EST collection version 3.0transcribed_cluster
CU151066cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G555600.2Csa1G555600.2mRNA
Csa1G555600.1Csa1G555600.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU119509CU119509transcribed_cluster
CU151066CU151066transcribed_cluster
CU115483CU115483transcribed_cluster
CU088776CU088776transcribed_cluster
CU141966CU141966transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 139..193
score: 5.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 132..181
score: 9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 133..196
score: 3.5
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 21..209
score: 7.2
NoneNo IPR availablePANTHERPTHR33124:SF7TRANSCRIPTION FACTOR BHLH149coord: 21..209
score: 7.2