Cp4.1LG07g08560 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription factor, putative
Location	Cp4.1LG07 : 7716155 .. 7716739 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

mRNA sequence

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

Coding sequence (CDS)

ATGGACGACGCTCCGATTTCAGACGCTGAGGAATCGAAGAACTCGAGAAGGTTGTTGCAGCAGCCGAATAAGCGCCGAAAAATTGCTTCCGATGTTTGTGCGGAAGGCAGAGAACGGAAGTGGAGGACAGAGGTCGAGCAACAGATCTACTCTTCAAAGCTCGTGGAAGCGATCCGGCAAGTCAGTCGGCGGCGGTCCTCGGCGCAAGCAGGATCTCCAATCAACGGACGATTAGTTCGCGAAACCGCGGATTGCGTTCTTGCCGCCGTAGCCAAGGGGAGGACTCGTTGGAGTCGCGCCATTCTAGCGAGCCGATTCCGCCAGAGGCTCGCGAGGCGTCGGAGGACGAAGAAATTGATCGGCCGTAAACCGTCGCGTATGGCGGAGACGAAGAGCGAGAAAAATAAGAAGTTGCCGGCAGTGCAGAGGAAGGTGAAAATTCTCGGCCGGTTAGTTCCAGGTTGCCGTAAACTCTCATTCCCGAACCTTCTGGAAGAAACAACCGATTACATCTCTGCTTTAGAGATGCAGGTAAGAGCCATGGCAGCGTTGGTCGAACTCCTCGCCGGAGCTCAAAGTAACTAA

Protein sequence

MDDAPISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGAQSN

Homology

[Close]

BLAST of Cp4.1LG07g08560 vs. Swiss-Prot
Match: BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-35
Identity = 91/158 (57.59%), Postives = 116/158 (73.42%), Query Frame = 1


Query: 39  RKWRTEVEQQIYSSKLVEAIRQVSRRRSSA---QAGSPING--RLVRETADCVLAAVAKG 98
           ++W+T   QQIY+ KLVEA+R+V +R S+    +    ++G  R +R+TAD VLAA A+G
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARG 101

Query: 99  RTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVP 158
            TRWSRAILASR R +L + R+ KK  G   SR   T++ + K LPAV+RK+KILGRLVP
Sbjct: 102 TTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNRIK-LPAVERKLKILGRLVP 161

Query: 159 GCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGA 192
           GCRK+S PNLL+E TDYI+ALEMQVRAM AL ELL  A
Sbjct: 162 GCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAA 198

[Close]

BLAST of Cp4.1LG07g08560 vs. Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-28
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 1


Query: 5   PISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ--VS 64
           P + +  S  SRR  ++ +    +           KWR+E +QQIYS+KLV A+R+  +S
Sbjct: 14  PTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRIS 73

Query: 65  RRRSSAQAGS-PINGRLVRETADCVLAAVAKGRTRWSRAILASRF--------RQRLARR 124
           ++ SS+ + S P  GR VRE AD  LA  A+G+T WSRAIL+           RQR++  
Sbjct: 74  QQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNP 133

Query: 125 RRTKKLIG--RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYI 184
             T    G  R   + A     K K LPAVQRKVK+L RLVPGCRK S P +LEETTDYI
Sbjct: 134 TTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYI 193

Query: 185 SALEMQVRAMAALVELLAGA 192
           +A+EMQ+R M A++  ++ +
Sbjct: 194 AAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Cp4.1LG07g08560 vs. Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 1


Query: 6   ISDAEESKNSRRLLQQPNKR---------RKIASDVCAEGRERKWRTEVEQQIYSSKLVE 65
           ISD E   ++   L +  KR         R  AS V  E   R WR+E +Q+IYS+KL +
Sbjct: 5   ISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHAR-WRSEKQQRIYSAKLFQ 64

Query: 66  AIRQVSRRRSSAQAGSPI---NGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARR 125
           A++QV    S++ + SP     G+ VRE AD  LA  A+GRT WSRAILA+R + +  ++
Sbjct: 65  ALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQ 124

Query: 126 RRTKKLIG-------------RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSF 185
           RR +  +              R   R         K +P V RKV++LGRLVPGC K S 
Sbjct: 125 RRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSV 184

Query: 186 PNLLEETTDYISALEMQVRAMAALVELLA 190
           P +LEE TDYI ALEMQVRAM +LV+LL+
Sbjct: 185 PVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of Cp4.1LG07g08560 vs. Swiss-Prot
Match: BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 1


Query: 17  RLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPING 76
           +L++   + R  + +       R+WR    Q++YS KL +A+ Q SRR ++         
Sbjct: 39  KLMEALRRSRVSSEEAPVRHLSRRWRATTAQKVYSLKLYDAL-QRSRRSAT--------- 98

Query: 77  RLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNK 136
             VR+TAD VLA  A+G TRWSRAIL SRF   L RRR TK       +      S + +
Sbjct: 99  --VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR 158

Query: 137 KLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGAQ 193
           KL AV  +V++LG LVPGCR+ + P LL+ET DYI+ALEMQVRAM AL ++L+  Q
Sbjct: 159 KLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILSELQ 202

[Close]

BLAST of Cp4.1LG07g08560 vs. TrEMBL
Match: A0A0A0LJ14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034620 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-52
Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 1


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DA++S NS+ LLQ  NK   +   +  E  + +W+TE++QQIYSS+L +A+R+V+  RSS
Sbjct: 2   DADDSNNSKTLLQHSNKC--LPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRT--KKLIGRKPS 127
               SP+NG LVR TAD VLAA AKGRTRWSRAILA+RFRQ LARRRR   KKL+ RKP 
Sbjct: 62  ----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP- 121

Query: 128 RMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALV 187
              E K+EK +KLPAVQRKVKILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AM AL 
Sbjct: 122 ---ELKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALA 180

Query: 188 ELLAGAQSN 195
           ELLAG Q N
Sbjct: 182 ELLAGNQRN 180

[Close]

BLAST of Cp4.1LG07g08560 vs. TrEMBL
Match: A5AMF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026724 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.5e-37
Identity = 101/175 (57.71%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 16  RRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPIN 75
           R +     KR+K+ S      R  +WRTE EQQIYS+KLVEAI +V  RRSSA A +   
Sbjct: 15  RSMESNRRKRKKMESGSQKVKRGGRWRTEAEQQIYSAKLVEAITKV--RRSSAPAAAVHR 74

Query: 76  GRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKN 135
           GR VRE AD VLAA  KGRTRWSRAI+ SR   RL +RR+       +  + A +K E  
Sbjct: 75  GRAVREAADRVLAAAGKGRTRWSRAIMTSRVGLRLRKRRKVTVTGNNRLRKPAVSKQE-- 134

Query: 136 KKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAG 191
              P ++R+V++LGRLVPGCRKLSFPNLLEE TDYI+ALEMQVRAM AL ELLAG
Sbjct: 135 ---PPLKRRVRVLGRLVPGCRKLSFPNLLEEATDYIAALEMQVRAMTALAELLAG 182

[Close]

BLAST of Cp4.1LG07g08560 vs. TrEMBL
Match: D7KJN4_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471014 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-36
Identity = 102/186 (54.84%), Postives = 130/186 (69.89%), Query Frame = 1


Query: 9   AEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRS-S 68
           +E S  SRR   + ++  +I S    E   ++W+T   QQIY+SKLVEA+R+V +R S S
Sbjct: 5   SESSPESRRKKPRISEMAEIESRRINEESLKRWKTNRVQQIYASKLVEALRRVRQRSSTS 64

Query: 69  AQAGSPING--RLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPS 128
            +    ++G  R +RETAD VLAA A+G TRWSRAILASR R +L + R+ KK  G   S
Sbjct: 65  TETDKVVSGAAREIRETADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKS 124

Query: 129 RMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALV 188
           R   T++ + K LPAV+RK+KILGRLVPGCRK+S PNLL+E TDYI+ALEMQVRAM AL 
Sbjct: 125 RKGVTETNRIK-LPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALA 184

Query: 189 ELLAGA 192
           ELL  A
Sbjct: 185 ELLTAA 189

[Close]

BLAST of Cp4.1LG07g08560 vs. TrEMBL
Match: A0A0A0LVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.4e-36
Identity = 104/199 (52.26%), Postives = 137/199 (68.84%), Query Frame = 1


Query: 1   MDDAPISDAEESKNSRRLL--QQPNKRRKIASDVCAEGRE----RKWRTEVEQQIYSSKL 60
           MD  PIS   +   S      Q+P+KRRKI S   +        R+W TE E +IYSSKL
Sbjct: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60

Query: 61  VEAIRQVSRRRS-SAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILAS-RFRQRLAR 120
           V+A+ +V+ ++S S  +GS I+GR VRETAD VLA  AKG+TRWSRAIL + R + +L +
Sbjct: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120

Query: 121 RRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYIS 180
           +++ K +     ++  + K E+ +KLP VQRKV+ L RLVPGCRK+SFPNLLEE +DYIS
Sbjct: 121 QKKVKTVGNCSRAKKLKIKYER-RKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYIS 180

Query: 181 ALEMQVRAMAALVELLAGA 192
           AL+MQVRAM A+ ELLAGA
Sbjct: 181 ALQMQVRAMTAVAELLAGA 198

[Close]

BLAST of Cp4.1LG07g08560 vs. TrEMBL
Match: M4DPY1_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.1e-35
Identity = 101/191 (52.88%), Postives = 133/191 (69.63%), Query Frame = 1


Query: 3   DAPISDAE-ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQV 62
           +A + DA  ES+  RR + +  K    +S++  E  +R WRT   QQIY+SKLVEA+R+V
Sbjct: 10  EATVDDASPESRRKRRRISETAKETAESSEINQESLKR-WRTNRVQQIYASKLVEALRRV 69

Query: 63  SRRRSSAQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIG 122
            R+RS+         R +R+TAD VLAA A+G TRWSRA+LA+R R  L + ++ K    
Sbjct: 70  -RQRSNDGGKITSAAREIRDTADRVLAASARGTTRWSRAVLATRVRASLKKHKKAKLTGA 129

Query: 123 RKPSRMAETKSE-KNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRA 182
           RKP +  +T +E K  KLPAV+RK+KILGRLVPGCRK++ PNLL+E TDYI+ALEMQVRA
Sbjct: 130 RKPRK--DTAAERKRSKLPAVERKLKILGRLVPGCRKVTVPNLLDEATDYIAALEMQVRA 189

Query: 183 MAALVELLAGA 192
           M +L ELLA A
Sbjct: 190 MESLAELLAAA 196

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR10
Match: AT1G09250.1 (AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-36
Identity = 91/158 (57.59%), Postives = 116/158 (73.42%), Query Frame = 1


Query: 39  RKWRTEVEQQIYSSKLVEAIRQVSRRRSSA---QAGSPING--RLVRETADCVLAAVAKG 98
           ++W+T   QQIY+ KLVEA+R+V +R S+    +    ++G  R +R+TAD VLAA A+G
Sbjct: 42  KRWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARG 101

Query: 99  RTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNKKLPAVQRKVKILGRLVP 158
            TRWSRAILASR R +L + R+ KK  G   SR   T++ + K LPAV+RK+KILGRLVP
Sbjct: 102 TTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETNRIK-LPAVERKLKILGRLVP 161

Query: 159 GCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGA 192
           GCRK+S PNLL+E TDYI+ALEMQVRAM AL ELL  A
Sbjct: 162 GCRKVSVPNLLDEATDYIAALEMQVRAMEALAELLTAA 198

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR10
Match: AT3G17100.1 (AT3G17100.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-29
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = 1


Query: 5   PISDAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQ--VS 64
           P + +  S  SRR  ++ +    +           KWR+E +QQIYS+KLV A+R+  +S
Sbjct: 14  PTTTSSNSDRSRRKRKKKSSPSSVEKSPSPSISLEKWRSEKQQQIYSTKLVHALRELRIS 73

Query: 65  RRRSSAQAGS-PINGRLVRETADCVLAAVAKGRTRWSRAILASRF--------RQRLARR 124
           ++ SS+ + S P  GR VRE AD  LA  A+G+T WSRAIL+           RQR++  
Sbjct: 74  QQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKRQRISNP 133

Query: 125 RRTKKLIG--RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYI 184
             T    G  R   + A     K K LPAVQRKVK+L RLVPGCRK S P +LEETTDYI
Sbjct: 134 TTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYI 193

Query: 185 SALEMQVRAMAALVELLAGA 192
           +A+EMQ+R M A++  ++ +
Sbjct: 194 AAMEMQIRTMTAILSAVSSS 213

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR10
Match: AT3G06590.1 (AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 89/209 (42.58%), Postives = 118/209 (56.46%), Query Frame = 1


Query: 6   ISDAEESKNSRRLLQQPNKR---------RKIASDVCAEGRERKWRTEVEQQIYSSKLVE 65
           ISD E   ++   L +  KR         R  AS V  E   R WR+E +Q+IYS+KL +
Sbjct: 5   ISDIEPPTSTTSDLVRRKKRSSASSAASSRSSASSVSGEIHAR-WRSEKQQRIYSAKLFQ 64

Query: 66  AIRQVSRRRSSAQAGSPI---NGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARR 125
           A++QV    S++ + SP     G+ VRE AD  LA  A+GRT WSRAILA+R + +  ++
Sbjct: 65  ALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQ 124

Query: 126 RRTKKLIG-------------RKPSRMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSF 185
           RR +  +              R   R         K +P V RKV++LGRLVPGC K S 
Sbjct: 125 RRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSV 184

Query: 186 PNLLEETTDYISALEMQVRAMAALVELLA 190
           P +LEE TDYI ALEMQVRAM +LV+LL+
Sbjct: 185 PVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]

BLAST of Cp4.1LG07g08560 vs. TAIR10
Match: AT3G05800.1 (AT3G05800.1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-27
Identity = 77/176 (43.75%), Postives = 105/176 (59.66%), Query Frame = 1


Query: 17  RLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPING 76
           +L++   + R  + +       R+WR    Q++YS KL +A+ Q SRR ++         
Sbjct: 39  KLMEALRRSRVSSEEAPVRHLSRRWRATTAQKVYSLKLYDAL-QRSRRSAT--------- 98

Query: 77  RLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKNK 136
             VR+TAD VLA  A+G TRWSRAIL SRF   L RRR TK       +      S + +
Sbjct: 99  --VRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR 158

Query: 137 KLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAGAQ 193
           KL AV  +V++LG LVPGCR+ + P LL+ET DYI+ALEMQVRAM AL ++L+  Q
Sbjct: 159 KLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILSELQ 202

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: gi|449454000|ref|XP_004144744.1| (PREDICTED: transcription factor bHLH149 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.1e-52
Identity = 126/189 (66.67%), Postives = 147/189 (77.78%), Query Frame = 1


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DA++S NS+ LLQ  NK   +   +  E  + +W+TE++QQIYSS+L +A+R+V+  RSS
Sbjct: 2   DADDSNNSKTLLQHSNKC--LPKILTPEPTQHRWKTEIQQQIYSSRLTQALRRVTHPRSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRT--KKLIGRKPS 127
               SP+NG LVR TAD VLAA AKGRTRWSRAILA+RFRQ LARRRR   KKL+ RKP 
Sbjct: 62  ----SPLNGNLVRRTADSVLAATAKGRTRWSRAILATRFRQSLARRRRRTKKKLLARKP- 121

Query: 128 RMAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALV 187
              E K+EK +KLPAVQRKVKILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AM AL 
Sbjct: 122 ---ELKTEKVRKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALA 180

Query: 188 ELLAGAQSN 195
           ELLAG Q N
Sbjct: 182 ELLAGNQRN 180

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: gi|659131114|ref|XP_008465518.1| (PREDICTED: transcription factor bHLH149-like [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 127/188 (67.55%), Postives = 146/188 (77.66%), Query Frame = 1


Query: 8   DAEESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSS 67
           DA++S NS  LL  P  +R     + AE  +  W+TE++QQIYSS+L EA+R+V+  RSS
Sbjct: 2   DADQSNNSTTLLPHPANKRP-PKILTAEPTQHTWKTEIQQQIYSSRLAEALRRVTHPRSS 61

Query: 68  AQAGSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRR-TKKLIGRKPSR 127
               S ING LVR+TAD VLAA AKGR+RWSRAILA+RFRQ LARRRR TKKL+ RKP  
Sbjct: 62  ----STINGNLVRQTADSVLAATAKGRSRWSRAILATRFRQSLARRRRRTKKLLARKP-- 121

Query: 128 MAETKSEKNKKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVE 187
             E K+EK +KLPAVQRKVKILGRLVPGCRKLSFPNLLEE TDYISALEMQV+AM AL E
Sbjct: 122 --ELKNEKARKLPAVQRKVKILGRLVPGCRKLSFPNLLEEATDYISALEMQVKAMTALAE 180

Query: 188 LLAGAQSN 195
           LLAG Q N
Sbjct: 182 LLAGNQRN 180

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: gi|147818278|emb|CAN64723.1| (hypothetical protein VITISV_026724 [Vitis vinifera])

HSP 1 Score: 162.2 bits (409), Expect = 9.4e-37
Identity = 101/175 (57.71%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 16  RRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPIN 75
           R +     KR+K+ S      R  +WRTE EQQIYS+KLVEAI +V  RRSSA A +   
Sbjct: 15  RSMESNRRKRKKMESGSQKVKRGGRWRTEAEQQIYSAKLVEAITKV--RRSSAPAAAVHR 74

Query: 76  GRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKN 135
           GR VRE AD VLAA  KGRTRWSRAI+ SR   RL +RR+       +  + A +K E  
Sbjct: 75  GRAVREAADRVLAAAGKGRTRWSRAIMTSRVGLRLRKRRKVTVTGNNRLRKPAVSKQE-- 134

Query: 136 KKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAG 191
              P ++R+V++LGRLVPGCRKLSFPNLLEE TDYI+ALEMQVRAM AL ELLAG
Sbjct: 135 ---PPLKRRVRVLGRLVPGCRKLSFPNLLEEATDYIAALEMQVRAMTALAELLAG 182

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: gi|731415898|ref|XP_002281846.2| (PREDICTED: transcription factor bHLH149 [Vitis vinifera])

HSP 1 Score: 162.2 bits (409), Expect = 9.4e-37
Identity = 101/175 (57.71%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 16  RRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQAGSPIN 75
           R +     KR+K+ S      R  +WRTE EQQIYS+KLVEAI +V  RRSSA A +   
Sbjct: 27  RSMESNRRKRKKMESGSQKVKRGGRWRTEAEQQIYSAKLVEAITKV--RRSSAPAAAVHR 86

Query: 76  GRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAETKSEKN 135
           GR VRE AD VLAA  KGRTRWSRAI+ SR   RL +RR+       +  + A +K E  
Sbjct: 87  GRAVREAADRVLAAAGKGRTRWSRAIMTSRVGLRLRKRRKVTVTGNNRLRKPAVSKQE-- 146

Query: 136 KKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELLAG 191
              P ++R+V++LGRLVPGCRKLSFPNLLEE TDYI+ALEMQVRAM AL ELLAG
Sbjct: 147 ---PPLKRRVRVLGRLVPGCRKLSFPNLLEEATDYIAALEMQVRAMTALAELLAG 194

[Close]

BLAST of Cp4.1LG07g08560 vs. NCBI nr
Match: gi|729399357|ref|XP_010553715.1| (PREDICTED: transcription factor bHLH149-like [Tarenaya hassleriana])

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 102/183 (55.74%), Postives = 125/183 (68.31%), Query Frame = 1


Query: 11  ESKNSRRLLQQPNKRRKIASDVCAEGRERKWRTEVEQQIYSSKLVEAIRQVSRRRSSAQA 70
           ES+  RR   +   RR I  D    G +R WRTE EQQIYSSKLVEA+R+V RRRS    
Sbjct: 17  ESRRKRRGKSEAETRRSIGEDQARRGTKR-WRTEREQQIYSSKLVEALRRV-RRRSGDSD 76

Query: 71  GSPINGRLVRETADCVLAAVAKGRTRWSRAILASRFRQRLARRRRTKKLIGRKPSRMAET 130
                 R +R+ AD VLAA A+G TRWSRAIL +R R RL + ++ K     +P  ++ET
Sbjct: 77  KISSEIREIRDAADRVLAASARGTTRWSRAILTTRVRARLRKHKKAKLTRKDRPRILSET 136

Query: 131 KSEKN--KKLPAVQRKVKILGRLVPGCRKLSFPNLLEETTDYISALEMQVRAMAALVELL 190
            +E++   KLPAV+ K+K LGRLVPGCRK+S PNLLEE TDYI+ALEMQVRAM AL +LL
Sbjct: 137 TAERSTKTKLPAVEMKLKTLGRLVPGCRKVSVPNLLEEATDYIAALEMQVRAMTALADLL 196

Query: 191 AGA 192
           A A
Sbjct: 197 ATA 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH149_ARATH	3.0e-35	57.59	Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1	[more]
BH147_ARATH	6.1e-28	43.00	Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1	[more]
BH148_ARATH	3.0e-27	42.58	Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1	[more]
BH150_ARATH	1.3e-25	43.75	Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1	[more]

BLAST of Cp4.1LG07g08560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ14_CUCSA	4.2e-52	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034620 PE=4 SV=1	[more]
A5AMF3_VITVI	6.5e-37	57.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026724 PE=4 SV=1	[more]
D7KJN4_ARALL	7.2e-36	54.84	Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata ...	[more]
A0A0A0LVP8_CUCSA	9.4e-36	52.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555600 PE=4 SV=1	[more]
M4DPY1_BRARP	6.1e-35	52.88	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09250.1	1.7e-36	57.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G17100.1	3.4e-29	43.00	sequence-specific DNA binding transcription factors	[more]
AT3G06590.1	1.7e-28	42.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G05800.1	7.2e-27	43.75	AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1	[more]

BLAST of Cp4.1LG07g08560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454000\|ref\|XP_004144744.1\|	6.1e-52	66.67	PREDICTED: transcription factor bHLH149 [Cucumis sativus]	[more]
gi\|659131114\|ref\|XP_008465518.1\|	1.8e-51	67.55	PREDICTED: transcription factor bHLH149-like [Cucumis melo]	[more]
gi\|147818278\|emb\|CAN64723.1\|	9.4e-37	57.71	hypothetical protein VITISV_026724 [Vitis vinifera]	[more]
gi\|731415898\|ref\|XP_002281846.2\|	9.4e-37	57.71	PREDICTED: transcription factor bHLH149 [Vitis vinifera]	[more]
gi\|729399357\|ref\|XP_010553715.1\|	6.1e-36	55.74	PREDICTED: transcription factor bHLH149-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08560.1	Cp4.1LG07g08560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 143..187 score: 7.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 125..174 score: 8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 139..189 score: 8.2
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 11..194 score: 4.6
None	No IPR available	PANTHER	PTHR33124:SF12	TRANSCRIPTION FACTOR BHLH147-RELATED	coord: 11..194 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08560	Cucsa.090560	Cucumber (Gy14) v1	cgycpeB0177
Cp4.1LG07g08560	CmaCh05G010680	Cucurbita maxima (Rimu)	cmacpeB789
Cp4.1LG07g08560	CmoCh05G010780	Cucurbita moschata (Rifu)	cmocpeB742
Cp4.1LG07g08560	Cla005156	Watermelon (97103) v1	cpewmB793
Cp4.1LG07g08560	Cla019979	Watermelon (97103) v1	cpewmB806
Cp4.1LG07g08560	Csa2G034620	Cucumber (Chinese Long) v2	cpecuB820
Cp4.1LG07g08560	MELO3C015253	Melon (DHL92) v3.5.1	cpemeB748
Cp4.1LG07g08560	ClCG02G014830	Watermelon (Charleston Gray)	cpewcgB733
Cp4.1LG07g08560	CSPI02G04790	Wild cucumber (PI 183967)	cpecpiB821
Cp4.1LG07g08560	Lsi11G006440	Bottle gourd (USVL1VR-Ls)	cpelsiB659
Cp4.1LG07g08560	Lsi06G000520	Bottle gourd (USVL1VR-Ls)	cpelsiB682
Cp4.1LG07g08560	MELO3C015253.2	Melon (DHL92) v3.6.1	cpemedB885
Cp4.1LG07g08560	CsaV3_2G007180	Cucumber (Chinese Long) v3	cpecucB1014
Cp4.1LG07g08560	Bhi06G001346	Wax gourd	cpewgoB1015
Cp4.1LG07g08560	CsGy2G004930	Cucumber (Gy14) v2	cgybcpeB271
Cp4.1LG07g08560	Carg11997	Silver-seed gourd	carcpeB0805
Cp4.1LG07g08560	Carg25584	Silver-seed gourd	carcpeB1293
Cp4.1LG07g08560	Carg05555	Silver-seed gourd	carcpeB0108

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g08560	Cp4.1LG11g08680	Cucurbita pepo (Zucchini)	cpecpeB139

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08560	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08560	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08560	Melon (DHL92) v3.5.1	cpemeB771
Cp4.1LG07g08560	Melon (DHL92) v3.6.1	cpemedB907