CsaV3_1G037910 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G037910
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptiontranscription factor bHLH149-like
Locationchr1 : 23785507 .. 23787104 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCCAAGATTCTTGTTTAATTTTGAAGTTCTTATGATCAAACCGAAAAAGAAGGTCATGTCTTCCTCCTAAACTCAAGAGGTTACGTTGTCAATTTATACATGCTAATAGGATATAGGATATCTGAGATGAAAGAATAGAAGTATTGGGTTTTAAAATAGGTAAGAAGAGATAATACAAATAACTCAAAATAATTAATTTAATATAAATATATGTATATATAGATAAAGATTAATAAATAATGGTGTGAGAGAGGGAGGGAGAGCAAGGAGGGGAAGAAATTGATGTGATTAAGAAGAGGCCGCGTAGTTGCCCTTTTCTTGCTTTAAAAATTAGCCATCCTTACTTCTGTTCTTTCTCCTCTCAACTAAAAACCTAAACCCTTTCTCTCTCTCTTTTCCTCCATTAACAACCTTTCTTAAGCTTTCCTTAACCATTCCTCTTTCCTGAGGTATTTTCTCTCTTCCATTTCCATTTCACCTTTTCCTTTCTTTTACCATTTTCGCTAATTATCAATTCCCTTCATCCCAACTTCTCTAATTAATTCCTTCTCCAAATTCTATTTTTTCCTTTGCAGATTCTTCTTGTATTCATCTCATACTGCTTCTCTATTGCTGGATTCATTTCTTGAAATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAGAAGCCACTCCCCAAGGCTTGTAATGCCAGCAGGTGTTTTCTTCTTTTTTTTTTCTTTTTCTTTTTTTCTTTTTCTTTTATATATATAATCTTTCTTCTTTTTTTCTTTTCACGAATATTATTATTCGTGTATTGTTATGAAATATTTTATTGTACACATTTTTAATTTCCATTTCTTTCTTTCTTTTTGGGTTTAATTTTTTGATTGAAAAGTAGTACCTAATTTTGATTCTCTTAATATAATAAGAGAAAGATAATAGATGGAATTAGGGAATTAGGTTTTGGTAATTTTATTTTTTATTTCCTCGATTATTATTATTATTATTTTATTCCCATT

mRNA sequence

ATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAG

Coding sequence (CDS)

ATGGATATGGATCCCATTTCTTCTAATCTCCAACACCTCACCAGTTCCGATTTCACGGAGGACCAGCGTCCCAGTAAACGCCGAAAAATCCATTCCCCGGAGATTTCCGTTGATGAATCCGCAGATTCGATAAGACGGTGGACAACAGAGTCGGAGCACCGGATTTACTCTTCCAAACTAGTCGATGCTCTTCATCGAGTAACTGCTCAGAAGTCTGCATCGCTTCCATCCGGATCTTCGATCGACGGCCGGAAAGTTCGCGAGACGGCGGACCGAGTTCTCGCCGTCGCTGCCAAAGGCAAGACTCGCTGGAGCAGAGCAATTCTCACGAATCCACGGCTCCAACACAAACTCAAGAAGCAGAAGAAGGTGAAGACGGTGGGAAACTGTAGCCGGGCGAAGAAATTGAAAATTAAGTATGAGAGGAGAAAATTGCCGACGGTGCAGAGGAAAGTTCGGACTCTCAGCCGCCTTGTACCCGGGTGCAGGAAAATATCGTTTCCGAATCTTCTTGAAGAAGCATCGGATTACATCTCTGCTCTACAGATGCAGGTTCGCGCCATGACAGCCGTGGCGGAGCTTCTCGCCGGCGCTCCGGGTGATCGTCAAAGTTTGAGAACAAATTCGTAG

Protein sequence

MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLAGAPGDRQSLRTNS
Homology
[Close]
BLAST of CsaV3_1G037910 vs. NCBI nr
Match: XP_004135755.1 (PREDICTED: transcription factor bHLH149-like [Cucumis sativus] >KGN65975.1 hypothetical protein Csa_1G555600 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 3.1e-106
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL
Sbjct: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK
Sbjct: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA
Sbjct: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELLAGAPGDRQSLRTNS
Sbjct: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of CsaV3_1G037910 vs. NCBI nr
Match: XP_008450537.1 (PREDICTED: transcription factor bHLH149-like [Cucumis melo] >XP_016900939.1 PREDICTED: transcription factor bHLH149-like [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 1.1e-95
Identity = 194/209 (92.82%), Postives = 195/209 (93.30%), Query Frame = 0 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSS FTED RP+KRRKI SPEISVDESADS  RWTTESEHRIYSSKL
Sbjct: 3   MDMDPISSNLQHLTSSHFTEDHRPTKRRKIQSPEISVDESADSRTRWTTESEHRIYSSKL 62

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTA KS SLPS SSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQ KLKK
Sbjct: 63  VDALHRVTAHKSTSLPSRSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQRKLKK 122

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYE RKLPTVQRKVRTL RLVPGCRKISFPNLLEEASDYISA
Sbjct: 123 QKKVKTVGNCSRAKKLKIKYETRKLPTVQRKVRTLGRLVPGCRKISFPNLLEEASDYISA 182

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELL GAP D QSLRTNS
Sbjct: 183 LQMQVRAMTAVAELLGGAPVDLQSLRTNS 211

[Close]
BLAST of CsaV3_1G037910 vs. NCBI nr
Match: XP_023516409.1 (transcription factor bHLH149-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 2.2e-67
Identity = 157/212 (74.06%), Postives = 173/212 (81.60%), Query Frame = 0 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62
           MD I+SNL+   SSDFTE QRPSKRRKI S     EI    S D  RRW TESE +IYSS
Sbjct: 1   MDAIASNLEESRSSDFTE-QRPSKRRKIESENQAAEICSARSTDLKRRWRTESEQQIYSS 60

Query: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122
           KLV+ALHRVT +++AS P+ SSI+GRKVRETAD VLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 61  KLVEALHRVT-RRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTN-RLELKL 120

Query: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182
           K  KK K  GNC R KKLKI+YE RKLPTVQRKV+TL RLVPGCRKISFPNLL+EA+DYI
Sbjct: 121 KNHKKAKPAGNCFRPKKLKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYI 180

Query: 183 SALQMQVRAMTAVAELLAGAPGD-RQSLRTNS 210
           +ALQMQVRAMTAVAELLAG P D +QS RTNS
Sbjct: 181 AALQMQVRAMTAVAELLAGTPADQQQSFRTNS 209

[Close]
BLAST of CsaV3_1G037910 vs. NCBI nr
Match: XP_022961410.1 (transcription factor bHLH149-like [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 155/212 (73.11%), Postives = 173/212 (81.60%), Query Frame = 0 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62
           MD I+SNL+   SSDFTE QRP KRRKI S     EI    S D  RRW TE+E +IYSS
Sbjct: 1   MDAIASNLEESRSSDFTE-QRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSS 60

Query: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122
           KLV+ALHRVT +++AS P+ SSI+GRKVRETAD VLAVAAKGKTRWSRAILTN RL+ KL
Sbjct: 61  KLVEALHRVT-RRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTN-RLELKL 120

Query: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182
           KK KK K  GNC R KK+KI+YE RKLPTVQRKV+TL RLVPGCRKISFPNLL+EA+DYI
Sbjct: 121 KKHKKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYI 180

Query: 183 SALQMQVRAMTAVAELLAGAPGD-RQSLRTNS 210
           +ALQMQVRAMTAVAELLAG P D +QS RTNS
Sbjct: 181 AALQMQVRAMTAVAELLAGTPADQQQSFRTNS 209

[Close]
BLAST of CsaV3_1G037910 vs. NCBI nr
Match: XP_022968790.1 (transcription factor bHLH149-like [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 154/212 (72.64%), Postives = 171/212 (80.66%), Query Frame = 0 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHS----PEISVDESADSIRRWTTESEHRIYSS 62
           MD I+SNL+   S DFTE QRPSK RKI S     EI    S D  RRW TESE +IYSS
Sbjct: 1   MDAIASNLEESRSFDFTE-QRPSKCRKIESENQAAEICSARSTDLKRRWRTESEQQIYSS 60

Query: 63  KLVDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKL 122
           KLV+ALHRVT +++AS P+ SSI+GRKVRETAD VLAVAA+GKTRWSRAILTN RL+ KL
Sbjct: 61  KLVEALHRVT-RRTASPPAKSSINGRKVRETADTVLAVAAEGKTRWSRAILTN-RLELKL 120

Query: 123 KKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYI 182
           K  KK K  GNC R KKLKI+YE RKLPTVQRKV+TL RLVPGCRKISFPNLL+EA+DYI
Sbjct: 121 KNHKKAKPAGNCFRPKKLKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYI 180

Query: 183 SALQMQVRAMTAVAELLAGAPGD-RQSLRTNS 210
           +ALQMQVRAMTAVAELLAG P D +QS RTNS
Sbjct: 181 AALQMQVRAMTAVAELLAGTPADQQQSFRTNS 209

[Close]
BLAST of CsaV3_1G037910 vs. TAIR10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-35
Identity = 93/190 (48.95%), Postives = 127/190 (66.84%), Query Frame = 0 

Query: 20  EDQRPSKRRKIHSPEISVDE---SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSAS-- 79
           E  R  K R   + E  ++    + +S++RW T    +IY+ KLV+AL RV  + S +  
Sbjct: 14  ESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSN 73

Query: 80  -----LPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKV-KTVG 139
                L SG++   R++R+TADRVLA +A+G TRWSRAIL + R++ KLKK +K  K+ G
Sbjct: 74  NETDKLVSGAA---REIRDTADRVLAASARGTTRWSRAILAS-RVRAKLKKHRKAKKSTG 133

Query: 140 NCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAM 199
           NC   K L  +  R KLP V+RK++ L RLVPGCRK+S PNLL+EA+DYI+AL+MQVRAM
Sbjct: 134 NCKSRKGL-TETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 193

[Close]
BLAST of CsaV3_1G037910 vs. TAIR10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-29
Identity = 77/167 (46.11%), Postives = 107/167 (64.07%), Query Frame = 0 

Query: 46  RWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTR 105
           RW +E + RIYS+KL  AL +V    SAS  S  +    G+ VRE ADR LAV+A+G+T 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 106 WSRAILTNPRLQHKLKKQKK-------------VKTVGNCSRAKKLKI-KYERRKLPTVQ 165
           WSRAIL N R++ K +KQ++             V +  N SR +++ + +  ++ +P V 
Sbjct: 107 WSRAILAN-RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVN 166

Query: 166 RKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           RKVR L RLVPGC K S P +LEEA+DYI AL+MQVRAM ++ +LL+
Sbjct: 167 RKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of CsaV3_1G037910 vs. TAIR10
Match: AT3G17100.1 (sequence-specific DNA binding transcription factors)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-28
Identity = 76/166 (45.78%), Postives = 111/166 (66.87%), Query Frame = 0 

Query: 46  RWTTESEHRIYSSKLVDALH--RVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTR 105
           +W +E + +IYS+KLV AL   R++ Q S+S  S     GR VRE ADR LAVAA+GKT 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 106 WSRAILTNP-RLQHKLKKQKKVK-------TVGNCSRAKKLK---IKYERRKLPTVQRKV 165
           WSRAIL+   +L+ +  K++++        T G+  R+KK +   ++ + + LP VQRKV
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSI-RSKKQRATVLRLKAKGLPAVQRKV 168

Query: 166 RTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLAGA 199
           + LSRLVPGCRK S P +LEE +DYI+A++MQ+R MTA+   ++ +
Sbjct: 169 KVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]
BLAST of CsaV3_1G037910 vs. TAIR10
Match: AT3G05800.1 (AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 86  VRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRA-KKLKIKYERRK 145
           VR+TAD+VLA  A+G TRWSRAIL + R    L++++  K     + A +       RRK
Sbjct: 89  VRDTADKVLATTARGATRWSRAILVS-RFGTSLRRRRNTKPASALAAAIRGSGGSGRRRK 148

Query: 146 LPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  V  +VR L  LVPGCR+ + P LL+E +DYI+AL+MQVRAMTA++++L+
Sbjct: 149 LSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of CsaV3_1G037910 vs. TAIR10
Match: AT1G09530.1 (phytochrome interacting factor 3)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-05
Identity = 19/49 (38.78%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 141 ERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMT 190
           ERR+   +  K+R L  L+P C K+   ++L+EA +Y+ +LQ+QV+ M+
Sbjct: 352 ERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMS 400

[Close]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match: sp|O80482|BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 93/190 (48.95%), Postives = 127/190 (66.84%), Query Frame = 0 

Query: 20  EDQRPSKRRKIHSPEISVDE---SADSIRRWTTESEHRIYSSKLVDALHRVTAQKSAS-- 79
           E  R  K R   + E  ++    + +S++RW T    +IY+ KLV+AL RV  + S +  
Sbjct: 14  ESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRSSTTSN 73

Query: 80  -----LPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKV-KTVG 139
                L SG++   R++R+TADRVLA +A+G TRWSRAIL + R++ KLKK +K  K+ G
Sbjct: 74  NETDKLVSGAA---REIRDTADRVLAASARGTTRWSRAILAS-RVRAKLKKHRKAKKSTG 133

Query: 140 NCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAM 199
           NC   K L  +  R KLP V+RK++ L RLVPGCRK+S PNLL+EA+DYI+AL+MQVRAM
Sbjct: 134 NCKSRKGL-TETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 193

[Close]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match: sp|Q9C8Z9|BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 77/167 (46.11%), Postives = 107/167 (64.07%), Query Frame = 0 

Query: 46  RWTTESEHRIYSSKLVDALHRVTAQKSASLPSGSSID--GRKVRETADRVLAVAAKGKTR 105
           RW +E + RIYS+KL  AL +V    SAS  S  +    G+ VRE ADR LAV+A+G+T 
Sbjct: 47  RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTL 106

Query: 106 WSRAILTNPRLQHKLKKQKK-------------VKTVGNCSRAKKLKI-KYERRKLPTVQ 165
           WSRAIL N R++ K +KQ++             V +  N SR +++ + +  ++ +P V 
Sbjct: 107 WSRAILAN-RIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVN 166

Query: 166 RKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           RKVR L RLVPGC K S P +LEEA+DYI AL+MQVRAM ++ +LL+
Sbjct: 167 RKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLS 212

[Close]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match: sp|Q9LSN7|BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-26
Identity = 76/166 (45.78%), Postives = 111/166 (66.87%), Query Frame = 0 

Query: 46  RWTTESEHRIYSSKLVDALH--RVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTR 105
           +W +E + +IYS+KLV AL   R++ Q S+S  S     GR VRE ADR LAVAA+GKT 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 106 WSRAILTNP-RLQHKLKKQKKVK-------TVGNCSRAKKLK---IKYERRKLPTVQRKV 165
           WSRAIL+   +L+ +  K++++        T G+  R+KK +   ++ + + LP VQRKV
Sbjct: 109 WSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSI-RSKKQRATVLRLKAKGLPAVQRKV 168

Query: 166 RTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLAGA 199
           + LSRLVPGCRK S P +LEE +DYI+A++MQ+R MTA+   ++ +
Sbjct: 169 KVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAILSAVSSS 213

[Close]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match: sp|Q9M9L6|BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 0 

Query: 86  VRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKKQKKVKTVGNCSRA-KKLKIKYERRK 145
           VR+TAD+VLA  A+G TRWSRAIL + R    L++++  K     + A +       RRK
Sbjct: 89  VRDTADKVLATTARGATRWSRAILVS-RFGTSLRRRRNTKPASALAAAIRGSGGSGRRRK 148

Query: 146 LPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMTAVAELLA 197
           L  V  +VR L  LVPGCR+ + P LL+E +DYI+AL+MQVRAMTA++++L+
Sbjct: 149 LSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

[Close]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match: sp|O80536|PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.2e-04
Identity = 19/49 (38.78%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 141 ERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVRAMT 190
           ERR+   +  K+R L  L+P C K+   ++L+EA +Y+ +LQ+QV+ M+
Sbjct: 352 ERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMS 400

[Close]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match: tr|A0A0A0LVP8|A0A0A0LVP8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555600 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.0e-106
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL
Sbjct: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK
Sbjct: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA
Sbjct: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELLAGAPGDRQSLRTNS
Sbjct: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 209

[Close]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match: tr|A0A1S4DY77|A0A1S4DY77_CUCME (transcription factor bHLH149-like OS=Cucumis melo OX=3656 GN=LOC103492109 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.3e-96
Identity = 194/209 (92.82%), Postives = 195/209 (93.30%), Query Frame = 0 

Query: 1   MDMDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKL 60
           MDMDPISSNLQHLTSS FTED RP+KRRKI SPEISVDESADS  RWTTESEHRIYSSKL
Sbjct: 3   MDMDPISSNLQHLTSSHFTEDHRPTKRRKIQSPEISVDESADSRTRWTTESEHRIYSSKL 62

Query: 61  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQHKLKK 120
           VDALHRVTA KS SLPS SSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQ KLKK
Sbjct: 63  VDALHRVTAHKSTSLPSRSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRLQRKLKK 122

Query: 121 QKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISA 180
           QKKVKTVGNCSRAKKLKIKYE RKLPTVQRKVRTL RLVPGCRKISFPNLLEEASDYISA
Sbjct: 123 QKKVKTVGNCSRAKKLKIKYETRKLPTVQRKVRTLGRLVPGCRKISFPNLLEEASDYISA 182

Query: 181 LQMQVRAMTAVAELLAGAPGDRQSLRTNS 210
           LQMQVRAMTAVAELL GAP D QSLRTNS
Sbjct: 183 LQMQVRAMTAVAELLGGAPVDLQSLRTNS 211

[Close]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match: tr|M5W049|M5W049_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G311800 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 103/193 (53.37%), Postives = 134/193 (69.43%), Query Frame = 0 

Query: 8   SNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDALHRV 67
           SN+     +   E  R  KRRKI + E   + + ++  RW +E+E RIYS+KLV+AL + 
Sbjct: 7   SNVDGSLDASLIESSR-KKRRKIGAVESDRNPTTNTGARWRSETEQRIYSTKLVEALRQ- 66

Query: 68  TAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAIL-TNPRLQHKLKKQKKVKT 127
            A++ +S  +  S  GR+V++ ADRVLA AAKG TRWSRAIL T  RL  KL K++  + 
Sbjct: 67  -ARQRSSRAAKVSGGGREVKKAADRVLAAAAKGTTRWSRAILRTRLRLNQKLHKRRTARV 126

Query: 128 VGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDYISALQMQVR 187
            GN +R KK +++ E RK P V+RKVR LSRLVPGCRK S PNLLEE SDYISAL+MQVR
Sbjct: 127 TGN-NRLKKAEVRREGRKSPVVERKVRVLSRLVPGCRKASLPNLLEETSDYISALEMQVR 186

Query: 188 AMTAVAELLAGAP 200
           AM A+ ELL+G+P
Sbjct: 187 AMAALTELLSGSP 195

[Close]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match: tr|A0A061FB51|A0A061FB51_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_026779 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 111/216 (51.39%), Postives = 138/216 (63.89%), Query Frame = 0 

Query: 3   MDPISSNLQHLTSSDFTEDQRPSKRRKIHSPEISVDESADS--IRRWTTESEHRIYSSKL 62
           M  +  NL+H  S D + + +  KRRK        D +  S  I+RW TE E +IYSSKL
Sbjct: 1   MASLIPNLEH--SPDMSPEFKRKKRRKTDETPGPFDRNQGSQRIKRWRTEREQQIYSSKL 60

Query: 63  VDALHRVTAQKSASLPSGSSIDGRKVRETADRVLAVAAKGKTRWSRAILTNPRL---QHK 122
           ++AL R       S  + SS   ++VRETADRVLAV+AKG  RWSRAIL + RL      
Sbjct: 61  IEALRR-------SRRTSSSTPAKEVRETADRVLAVSAKGTMRWSRAILAS-RLGVGAKT 120

Query: 123 LKKQKKVKTVGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLEEASDY 182
           ++K KK K   N S  +K +IK E+RKLP V+RK++ L RLVPG RK+SF NLLEE SDY
Sbjct: 121 MRKHKKAKVTANRS-LRKPEIKGEKRKLPAVERKLKVLGRLVPGGRKLSFSNLLEETSDY 180

Query: 183 ISALQMQVRAMTAVAELLAGA----PGDRQSLRTNS 210
           I+AL+MQVRAMTA+ ELLAGA    P DR   R NS
Sbjct: 181 IAALEMQVRAMTAITELLAGAGTQPPTDRLGSRINS 205

[Close]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match: tr|A0A2P4MUM9|A0A2P4MUM9_QUESU (Transcription factor OS=Quercus suber OX=58331 GN=CFP56_27045 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 103/213 (48.36%), Postives = 138/213 (64.79%), Query Frame = 0 

Query: 7   SSNLQHLTSSDFT---EDQRPSKRRKIHSPEISVDESADSIRRWTTESEHRIYSSKLVDA 66
           SS    +++ DF    E+ + +KRRK  + +   D   ++I RW +ESE R YS+KLV+A
Sbjct: 48  SSMESTISNPDFNIEEEELKRTKRRKTEARDPESDPKPETI-RWRSESEQRNYSTKLVEA 107

Query: 67  LHRVTAQKSASLPSGSSID---GRKVRETADRVLAVAAKGKTRWSRAILT---NPRLQHK 126
           L +V    S+S PS +       R++R+ A+RVLAV+AKGKTRWSRAILT   + +L H 
Sbjct: 108 LRQVRRNSSSSSPSSAKHSVGRHREIRDAANRVLAVSAKGKTRWSRAILTSRLSSKLAHN 167

Query: 127 LKKQKKVKT-----VGNCSRAKKLKIKYERRKLPTVQRKVRTLSRLVPGCRKISFPNLLE 186
             K KK        V  CSR      + E+++LP VQRKV+ LSRLVPGCRK+S PNLLE
Sbjct: 168 NTKHKKGANRAGAKVTGCSRLS----RPEKKRLPAVQRKVKVLSRLVPGCRKVSLPNLLE 227

Query: 187 EASDYISALQMQVRAMTAVAELLAGAPGDRQSL 206
           E +DYI+AL+MQVRAMT + E+L GAP +R  L
Sbjct: 228 ETTDYIAALEMQVRAMTKITEILTGAPVNRLGL 255

The following BLAST results are available for this feature:
BLAST of CsaV3_1G037910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135755.13.1e-106100.00PREDICTED: transcription factor bHLH149-like [Cucumis sativus] >KGN65975.1 hypot... [more]
XP_008450537.11.1e-9592.82PREDICTED: transcription factor bHLH149-like [Cucumis melo] >XP_016900939.1 PRED... [more]
XP_023516409.12.2e-6774.06transcription factor bHLH149-like [Cucurbita pepo subsp. pepo][more]
XP_022961410.11.1e-6673.11transcription factor bHLH149-like [Cucurbita moschata][more]
XP_022968790.12.6e-6572.64transcription factor bHLH149-like [Cucurbita maxima][more]
BLAST of CsaV3_1G037910 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09250.15.9e-3548.95basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G06590.16.3e-2946.11basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G17100.17.0e-2845.78sequence-specific DNA binding transcription factors[more]
AT3G05800.11.0e-1848.21AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1[more]
AT1G09530.12.9e-0538.78phytochrome interacting factor 3[more]
BLAST of CsaV3_1G037910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O80482|BH149_ARATH1.1e-3348.95Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=... [more]
sp|Q9C8Z9|BH148_ARATH1.1e-2746.11Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=... [more]
sp|Q9LSN7|BH147_ARATH1.3e-2645.78Transcription factor bHLH147 OS=Arabidopsis thaliana OX=3702 GN=BHLH147 PE=1 SV=... [more]
sp|Q9M9L6|BH150_ARATH1.8e-1748.21Transcription factor bHLH150 OS=Arabidopsis thaliana OX=3702 GN=BHLH150 PE=1 SV=... [more]
sp|O80536|PIF3_ARATH5.2e-0438.78Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1[more]
BLAST of CsaV3_1G037910 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVP8|A0A0A0LVP8_CUCSA2.0e-106100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555600 PE=4 SV=1[more]
tr|A0A1S4DY77|A0A1S4DY77_CUCME7.3e-9692.82transcription factor bHLH149-like OS=Cucumis melo OX=3656 GN=LOC103492109 PE=4 S... [more]
tr|M5W049|M5W049_PRUPE1.5e-3753.37Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G311800 PE=4 SV=1[more]
tr|A0A061FB51|A0A061FB51_THECC5.0e-3651.39Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca... [more]
tr|A0A2P4MUM9|A0A2P4MUM9_QUESU1.4e-3548.36Transcription factor OS=Quercus suber OX=58331 GN=CFP56_27045 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G037910.1CsaV3_1G037910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 111..196
e-value: 1.3E-5
score: 27.0
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 133..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..41
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 19..201
NoneNo IPR availablePANTHERPTHR33124:SF7TRANSCRIPTION FACTOR BHLH149-RELATEDcoord: 19..201
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 132..181
score: 9.972