Lsi05G019900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G019900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Histone deacetylase complex subunit SAP18, putative
Location	chr05 : 26976962 .. 26980186 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGACTTGAAGAATACTGAGAGAGAGAAATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGGTTTCTCTCTTTCTCTCCTCTCTTTTTAGGGTTTCTGTCCCTTCCGGCGTTGTCTCTGATTTTCAATTTTGGTGTTCATTACCTTGTTATTGAATCCATCTTCATCTTAAATCGTTTTCTTCTGTCTTTGCTCTGGAATGCCATAAGAATCTCTTTATTTTCATTCTTATTATTTGAAACTCCAATTATTCCCTTTCCGTTACCTCTTAGTGTTCAAAGCTGGCTGTGTAAACATAGATAGCAGCTTTCATTTTCTATGCTGAGTCATTTCGTTTCTCTTCCTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTATGTTGTATTTTGATGCTGGCTTTTGTTTTTATGAATTTTGTTTCGTATCTATGCAAAGTACGCAAAGAACAAGTGTGTTTCATCGCTTGAGGAACTGTAGTTTAATCCAGCCGATGTATCAATAGGGATGAAATGAAGTGCGTTGGGTTTCGAATTTGTGTGAAATGTTCTTTTGTTAATGTGATTGCGGAAACAGATAGGACTTAGGAACCGGATTAGAGGATCATTGAAGCAAATTTCCTTGGTTTTGCGCTGCTACATTTAGGTTATGAGGCTATATTGCTTATTGATGATCTAGGCTACCTTTTGCAAATCCTTGGCAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGACATAAATACCAATGATCTGTATCTTTTTGATTTATATCCATGATGCGTTCATAGACACTATTTCCCTTCCATTGCCCCTTGAACTTATGTGTCTGTACTTTTTTCTTCCCCTTTGGGTGGGGGAGCTTACAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTATTTATTTTCTCTCCTTTCCCATGTACCGTCATGCACACACACCTATATTTAGGTTTTCAGGATGATATACTAGAAAAACATCCATGACTCTTTGCACTTTTTACATTAAGTGTATCAAATTGAACACCCAAGTTAAATAAATGGTAAAATTATTATTTGTTATCACTTATCAAAACTAGGCTAGCCAAAGTGAGCGTAGCTCAATTAGCACAAAGTATCTGTTAATGACCGACAAGTACGTAGTTTGAAACTTATTTGAACTAGGCTAGATATTGCCCAAAAATTACTTGGATTCGACCAGAAAAACATTAACACTTTACAAGTTCAAGCAACAAAAACCTAACTACAAAGCGCACAAACCTTGCCAAACAAATGCTTAAATACAGAAATCAGCACTCGTGATTATTGTGCATCCAACTACGAGACTGGCATAAATGTCAAAGAGAAAAATTAACACCTGAACTAAGGAAAGTATTGAAGTAATCATTTATTTTAGTTTTGGTATCAATTCAATGAAATTAAGATTGTAGGGTTGAATTTTTACTCACTCGACCAAGTGCTGAAATAAAAAATGTTCCCCAATGTCAATCCTATACGTATATGACTTGTTCGATTGGGACAATACTTTCAGACTGGACTCTTTCATAGTCTTAAGAAAGTTTGAAGCGCACCATTTTGTTAAAAGATGGGTCGTTCTGCTTCTTGGACGTAGGTAGACATTAAACATGCTGAACTTGTGCTTAAGTTGCATACTCTTGCATGACTGTGATGGAGAAGTTGCCCAATTAAATTCATTTAGTGCTGAAAGGAGACAACTTATTAGGCTGAACTGAAATCTTTTATACTGAACTAGTGTCTTCGTGCCCTGCTGTAGCTTGCAGTTTCCTTAGCAGCAAAGAGTTTTCTTTATAAGGGCTTAGTTTGTGATATAAATGAATTCGTGATAAATTGCCCTCACTTAATTGACCTTTTGTAATTTACGTTTACAAATGTATGAAGAAAGCGAATTTCGAGTCCTAGCTTTAGTAGATATGACTAGTTATCATTTTGAAAGTTGATGCTTTGATCTCCATCTCTCCCATTGTTGTGCGAGGATCCCACGTTGAAAAGATAAAGTTACCTCACAATCTTTAAAAGATATATGAGTTATTCTTCTCATCGTCAATTAATTTTTAGATAGAACTCATGTTTATCTAATATGGTACTATAGCTCACAAAGTCTAAATGGATATTTGGTCCAAAAAATTGAGAGGCATGTGAGGATCTCATCCACATTGAACCGATGAAGAAACCATGAGTTATTCTTCAGAAATTTATATTTAACTAATGTATTGAACTAAAAGAAAATAGCTTGAGTCAGAGATTCTTTTCTTTATGTGAAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGGTAAAACAAACATGGCTTTCGTTTTCGCCATATCAATCCTGTATTCCTTCTCATTCTTGCTGCAATTTTTTCCACGCAGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGAGGATATTAGCTTCAATCTTGTAATGTATATTCCATTTAAGAATTGGTTGAAAATCCTTTACTTTTTTTTGTCTTGGGCCCTATTAGGTAGATCATGATAGTCATCAATCGTCATGTTCATTTGAGTTACCTTCTTGTTGTATTGCATTGCATGAAGCAGGCCTTAGGATAGAGTTTTCATTAGGACGATAATGGTGGAACTATTTTGGGCCTTTATCTTAATATCAGCTTTTCGTTTTTAAAATTTAAGTCTGTTAGTTTTAACTTGCTAAGTCATTATATAAGTTACCACATGTTGAACTATATATATATATATGATCCAAAAACGCTATTTTACTTTTTTGTAATTCTCAAAATGTTAATTTGTTTAATTCTCAACTTTAATTTGATGC

mRNA sequence

TGAGACTTGAAGAATACTGAGAGAGAGAAATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGACATAAATACCAATGATCTGTATCTTTTTGATTTATATCCATGATGCGTTCATAGACACTATTTCCCTTCCATTGCCCCTTGAACTTATGTGTCTGTACTTTTTTCTTCCCCTTTGGGTGGGGGAGCTTACAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAGAGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGATCGGAGATTACTTGGATGTGGCAATTATATAGGGTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGAGGATATTAGCTTCAATCTTGTAATGTATATTCCATTTAAGAATTGGTTGAAAATCCTTTACTTTTTTTTGTCTTGGGCCCTATTAGGTAGATCATGATAGTCATCAATCGTCATGTTCATTTGAGTTACCTTCTTGTTGTATTGCATTGCATGAAGCAGGCCTTAGGATAGAGTTTTCATTAGGACGATAATGGTGGAACTATTTTGGGCCTTTATCTTAATATCAGCTTTTCGTTTTTAAAATTTAAGTCTGTTAGTTTTAACTTGCTAAGTCATTATATAAGTTACCACATGTTGAACTATATATATATATATGATCCAAAAACGCTATTTTACTTTTTTGTAATTCTCAAAATGTTAATTTGTTTAATTCTCAACTTTAATTTGATGC

Coding sequence (CDS)

ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGA

Protein sequence

MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIPFQPLLPPRFA

Homology

[Close]

BLAST of Lsi05G019900 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.8e-27
Identity = 61/85 (71.76%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 5  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
          AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2  AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65 GKEPRDEVQIYTWKDATLRELTDLV 84
          GKEP+DEVQIYTWKDA+LRELTDLV
Sbjct: 62 GKEPKDEVQIYTWKDASLRELTDLV 86

[Close]

BLAST of Lsi05G019900 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 28 EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLI 87
          +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + 
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88 P 89
          P
Sbjct: 78 P 78

[Close]

BLAST of Lsi05G019900 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 28 EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLI 87
          +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + 
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88 P 89
          P
Sbjct: 78 P 78

[Close]

BLAST of Lsi05G019900 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 28 EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLI 87
          +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + 
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88 P 89
          P
Sbjct: 78 P 78

[Close]

BLAST of Lsi05G019900 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 28 EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLI 87
          +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + 
Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88 P 89
          P
Sbjct: 78 P 78

[Close]

BLAST of Lsi05G019900 vs. TrEMBL
Match: A0A0A0L6C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.9e-38
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
          MAGEAEAPRRAYG  PRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 61 EPRDEVQIYTWKDATLRELTDLVVFLIP 89
          EPRDEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 EPRDEVQIYTWKDATLRELTDLVKEVAP 88

[Close]

BLAST of Lsi05G019900 vs. TrEMBL
Match: M5X2P5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
          MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1  MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 61 EPRDEVQIYTWKDATLRELTDLVVFLIP 89
          EP+DEVQIYTWKDA LRELTDLV  + P
Sbjct: 61 EPKDEVQIYTWKDANLRELTDLVKEVAP 88

[Close]

BLAST of Lsi05G019900 vs. TrEMBL
Match: D7U7P2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g01290 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALP---RAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAV 60
          MAG  E P+RA   LP   R P  PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFAV
Sbjct: 1  MAGAGEGPKRAGRPLPPPGRGPPPPPRPRFEPVDREKTCPLLLRVFTKIGCHHSKEDFAV 60

Query: 61 RGKEPRDEVQIYTWKDATLRELTDLVVFLIP 89
          RGKEP+DEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 RGKEPKDEVQIYTWKDATLRELTDLVKEVAP 91

[Close]

BLAST of Lsi05G019900 vs. TrEMBL
Match: A0A061DVR5_THECC (SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-28
Identity = 70/92 (76.09%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGA-LP---RAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFA 60
          MAG AEA +R  G  LP   R P  PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFA
Sbjct: 1  MAGAAEAQKRQSGRPLPPPARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSKEDFA 60

Query: 61 VRGKEPRDEVQIYTWKDATLRELTDLVVFLIP 89
          VRGKEP+DEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 VRGKEPKDEVQIYTWKDATLRELTDLVKEVAP 92

[Close]

BLAST of Lsi05G019900 vs. TrEMBL
Match: A0A0B0NV41_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 67/92 (72.83%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGA----LPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFA 60
           MAG AE  +R  G       R P  PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFA
Sbjct: 30  MAGAAEPQKRQSGRPFPPSARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSKEDFA 89

Query: 61  VRGKEPRDEVQIYTWKDATLRELTDLVVFLIP 89
           VRGKEP+DEVQIYTWKDATLRELTDLV  + P
Sbjct: 90  VRGKEPKDEVQIYTWKDATLRELTDLVKEVAP 121

[Close]

BLAST of Lsi05G019900 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-28
Identity = 61/85 (71.76%), Postives = 66/85 (77.65%), Query Frame = 1


Query: 5  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
          AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2  AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65 GKEPRDEVQIYTWKDATLRELTDLV 84
          GKEP+DEVQIYTWKDA+LRELTDLV
Sbjct: 62 GKEPKDEVQIYTWKDASLRELTDLV 86

[Close]

BLAST of Lsi05G019900 vs. NCBI nr
Match: gi|659075396|ref|XP_008438121.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-39
Identity = 82/88 (93.18%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
          MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1  MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61 EPRDEVQIYTWKDATLRELTDLVVFLIP 89
          EPRDEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 EPRDEVQIYTWKDATLRELTDLVKEVAP 88

[Close]

BLAST of Lsi05G019900 vs. NCBI nr
Match: gi|449432217|ref|XP_004133896.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.6e-38
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
          MAGEAEAPRRAYG  PRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 61 EPRDEVQIYTWKDATLRELTDLVVFLIP 89
          EPRDEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 EPRDEVQIYTWKDATLRELTDLVKEVAP 88

[Close]

BLAST of Lsi05G019900 vs. NCBI nr
Match: gi|645253992|ref|XP_008232830.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume])

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-30
Identity = 66/88 (75.00%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
          MAG A+AP+RA     R P +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1  MAGVAQAPKRALAPQGRGPRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 61 EPRDEVQIYTWKDATLRELTDLVVFLIP 89
          EP+DEVQIYTW+DA LRELTDLV  + P
Sbjct: 61 EPKDEVQIYTWRDANLRELTDLVKEVAP 88

[Close]

BLAST of Lsi05G019900 vs. NCBI nr
Match: gi|731421055|ref|XP_010661602.1| (PREDICTED: histone deacetylase complex subunit SAP18 isoform X2 [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1  MAGEAEAPRRAYGALP---RAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAV 60
          MAG  E P+RA   LP   R P  PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFAV
Sbjct: 1  MAGAGEGPKRAGRPLPPPGRGPPPPPRPRFEPVDREKTCPLLLRVFTKIGCHHSKEDFAV 60

Query: 61 RGKEPRDEVQIYTWKDATLRELTDLVVFLIP 89
          RGKEP+DEVQIYTWKDATLRELTDLV  + P
Sbjct: 61 RGKEPKDEVQIYTWKDATLRELTDLVKEVAP 91

[Close]

BLAST of Lsi05G019900 vs. NCBI nr
Match: gi|731421053|ref|XP_002277566.2| (PREDICTED: histone deacetylase complex subunit SAP18 isoform X1 [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGALP---RAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAV 60
           MAG  E P+RA   LP   R P  PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFAV
Sbjct: 30  MAGAGEGPKRAGRPLPPPGRGPPPPPRPRFEPVDREKTCPLLLRVFTKIGCHHSKEDFAV 89

Query: 61  RGKEPRDEVQIYTWKDATLRELTDLVVFLIP 89
           RGKEP+DEVQIYTWKDATLRELTDLV  + P
Sbjct: 90  RGKEPKDEVQIYTWKDATLRELTDLVKEVAP 120

The following BLAST results are available for this feature:

BLAST of Lsi05G019900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	5.8e-27	71.76	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_BOVIN	2.1e-13	59.02	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_HUMAN	2.1e-13	59.02	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_MOUSE	2.1e-13	59.02	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]
SAP18_PONAB	2.1e-13	59.02	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]

BLAST of Lsi05G019900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C9_CUCSA	3.9e-38	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1	[more]
M5X2P5_PRUPE	1.9e-29	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1	[more]
D7U7P2_VITVI	1.9e-29	75.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g01290 PE=4 SV=...	[more]
A0A061DVR5_THECC	1.3e-28	76.09	SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1	[more]
A0A0B0NV41_GOSAR	1.1e-27	72.83	Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1	[more]

BLAST of Lsi05G019900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	3.3e-28	71.76	SIN3 associated polypeptide P18	[more]

BLAST of Lsi05G019900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075396\|ref\|XP_008438121.1\|	5.1e-39	93.18	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]	[more]
gi\|449432217\|ref\|XP_004133896.1\|	5.6e-38	90.91	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus]	[more]
gi\|645253992\|ref\|XP_008232830.1\|	4.3e-30	75.00	PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume]	[more]
gi\|731421055\|ref\|XP_010661602.1\|	2.8e-29	75.82	PREDICTED: histone deacetylase complex subunit SAP18 isoform X2 [Vitis vinifera]	[more]
gi\|731421053\|ref\|XP_002277566.2\|	2.8e-29	75.82	PREDICTED: histone deacetylase complex subunit SAP18 isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G019900.1	Lsi05G019900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 9..83 score: 5.6
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 29..85 score: 4.3
None	No IPR available	PANTHER	PTHR13082:SF0	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18	coord: 9..83 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G019900	Csa3G124880	Cucumber (Chinese Long) v2	culsiB209
Lsi05G019900	CSPI03G09290	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G019900	Cucsa.257900	Cucumber (Gy14) v1	cgylsiB415
Lsi05G019900	CmaCh06G011170	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G019900	CmoCh06G011440	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G019900	Cla021281	Watermelon (97103) v1	lsiwmB365
Lsi05G019900	MELO3C006160	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G019900	ClCG05G001990	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G019900	MELO3C006160.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G019900	Cla97C05G082440	Watermelon (97103) v2	lsiwmbB333
Lsi05G019900	Bhi01G000217	Wax gourd	lsiwgoB435
Lsi05G019900	Cp4.1LG08g01790	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G019900	CsGy3G009370	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G019900	Carg23889	Silver-seed gourd	carlsiB442
Lsi05G019900	CsaV3_3G009410	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G019900	Watermelon (97103) v2	lsiwmbB320
Lsi05G019900	Watermelon (97103) v2	lsiwmbB345
Lsi05G019900	Bottle gourd (USVL1VR-Ls)	lsilsiB007
Lsi05G019900	Cucumber (Gy14) v1	cgylsiB488
Lsi05G019900	Cucumber (Gy14) v1	cgylsiB585
Lsi05G019900	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G019900	Cucurbita maxima (Rimu)	cmalsiB286
Lsi05G019900	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G019900	Cucurbita moschata (Rifu)	cmolsiB275
Lsi05G019900	Cucurbita pepo (Zucchini)	cpelsiB271
Lsi05G019900	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G019900	Wild cucumber (PI 183967)	cpilsiB383
Lsi05G019900	Wild cucumber (PI 183967)	cpilsiB470
Lsi05G019900	Cucumber (Chinese Long) v2	culsiB462
Lsi05G019900	Melon (DHL92) v3.5.1	lsimeB338
Lsi05G019900	Watermelon (Charleston Gray)	lsiwcgB346
Lsi05G019900	Watermelon (97103) v1	lsiwmB377
Lsi05G019900	Watermelon (97103) v1	lsiwmB385
Lsi05G019900	Cucumber (Gy14) v2	cgyblsiB344
Lsi05G019900	Cucumber (Gy14) v2	cgyblsiB430
Lsi05G019900	Melon (DHL92) v3.6.1	lsimedB354
Lsi05G019900	Silver-seed gourd	carlsiB565
Lsi05G019900	Silver-seed gourd	carlsiB853
Lsi05G019900	Cucumber (Chinese Long) v3	cuclsiB403
Lsi05G019900	Cucumber (Chinese Long) v3	cuclsiB491