Carg23889 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23889
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	histone deacetylase complex subunit SAP18
Location	Cucurbita_argyrosperma_scaffold_252 : 70925 .. 73567 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGGTATGTCTTTCTTTCCTTCTCATCTTTTACTTTTAGGGTTTCTGTCCGTTCCATCATCATGTCAGTTTTAATTTTGGTGTTCATTAGCTTGTTTTTGAATCCATCTTCATCTTCAATCGGTTTCTCGTTTCTTCGTTCTAGAACGCTATAGAAATTGCATTATTCTGATGATGATTATTTGGAACTTTGAGTATTGCCTTATTCTGGCTTAACGATTCTGTTTTACATCGATAGCTATGTAAACATAGATAGCGTCTTTGACTTTCTATACTGAGTCATTTTACTTCTCTTCTTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTACGTTGTATTTTTGATGCTGGCCTTTTGTTTTTATGAATTGTGTTACATTTTTGTGCAAAGTTGGAAGTGACTAAGTACCGGAAAGCAAGTTTGTTTTCTAGATTAATCCATTAAGTATGAAATGAAATTCGTTGGACGCGGATTTTTTGTGTGAAATATTCATCTGTTTATGTCATTGTGGAGACCGATAGGATTTAGGCGTCGGATGAGAGGATAATTAAAGCAGATTTCTCTGGTGTTGCGTTTCTACATTTAGGTTATGAGGCATATCATATAGCTTATTGATGATCTACTCTCCTGGTTCTAAGTAATGCCACTTATTGGATTAGGGAACAGTCATTATGAAATTGAAATTTGCGTTAATTGCAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTGTTTCTCATCCCTTTTCAATCATTTCTCCTTGCACGCTTCGCATGACATAATTACGAATGATCTATATCATTTTTAGTTAATGTTTTTTTGTTAAATGCCACACTGTTTACCTTACTGCTGTCCTTGAACTTATGTTGTGAGTTTGTGTGTTTGTTTTTTTTCGGGGGTGGGGTCACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTACCTCTCTCCATTTCTGTGCTCTCTTTCTTCCACTCTGACTTGAATGCACACTTTTATTTATGTTTTCAGGATGTTACATTGGAAATATTCATGATCTTTCGCCCTTTTTACTTCGTTGAGTTTCGATTATATGAAATTGAAGATGTAAGTTGATTAGTGGTAAAATCATCAGCTAGAAATTACCCAAAACCCATTAATTGTCCTAGAATTCGTCCCACTTAGTACTCAAATCTAGTCTTAACATTACTGGAATTTGACCAGAAAAAAAATTGAATACTTTTAACATGTTCAAGCATCAAGGACCAAACAGCAAACAAACCTAGCCTAGAGAAATGCTTATCTACAAAATCAGTAATGTGTTGAACTACAAGAATGCCATAAATGTCAAAGGAAAAAAGACAACTGAACTAAGGGAGGAGATTGAAGTTATTTATTCTAGTGTTGAATTTGACTAAACTAAATCTGGAAATACAAAATAAATATTTCCCTATTGAGTATTATGTTGACAGATGTTATGTCTACGACTTGTTTGATCGTGACAATACTTTCAAACTCGAGTTTTCCCATAGTCTTAAGAAGTTTGTAGCGCTCAGTTTTGTGAAAAGGTGGGTAGTTCTGATTCTAGGACATGTATGAACACATCGAACGGGCTTAACTAGTGCCTACGTTGCATATTCTTGTGCGGCTGTGATGGATAAGCTGCCCATTTAATTTCATTTAGTGCTTTTAAAGGATCACTTGCTAATTACACGGTTGTTGAATGAAATGACACAAAATCTTCTGTACTAATCACCCTTTCTTCATGCCCTGCCAGTTTGCATTTTCCTTCACTGCAAATACCTCTGTATATCTGCTAGGTGAATCGAATTAGATTGACCTATTTCTTAAAAGAACATAAAGTAATGTACGATTATAAACAAAGGTATGAAGAAAGTGAACTATTATACGAGCCTCCGAGTAATACAGATTCTGTTTCTTTACGTGAAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTAAAACAAACATGAGTTTTGTTTTTTGCCATCTCATTCCCCTCCTGTATTTTGTCGCGTACTTACGACACTTTTTCCCTGCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAAGCTTCAATGTCGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTTGTGTTGTGTTGTGTTGTTCCCTTGGTCTTTCAGGTGGAATCATGATAGTCATCTGTCTTGAATATGAAATCAATTGAGGAGTA

mRNA sequence

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAAGCTTCAATGTCGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTTGTGTTGTGTTGTGTTGTTCCCTTGGTCTTTCAGGTGGAATCATGATAGTCATCTGTCTTGAATATGAAATCAATTGAGGAGTA

Coding sequence (CDS)

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAACGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAG

Protein sequence

MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII

Homology

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BLAST of Carg23889 vs. NCBI nr
Match: XP_022943948.1 (histone deacetylase complex subunit SAP18-like [Cucurbita moschata])

HSP 1 Score: 322.8 bits (826), Expect = 7.1e-85
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 172
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]

BLAST of Carg23889 vs. NCBI nr
Match: XP_022974173.1 (histone deacetylase complex subunit SAP18-like [Cucurbita maxima])

HSP 1 Score: 321.6 bits (823), Expect = 1.6e-84
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRPPGLAYKLQKLPEVAENTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP 60
           MRPPGLAYKLQKLPEVA+NTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP
Sbjct: 1   MRPPGLAYKLQKLPEVADNTDTEMAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCP 60

Query: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120
           LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL
Sbjct: 61  LLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKL 120

Query: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 172
           SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 SFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 171

[Close]

BLAST of Carg23889 vs. NCBI nr
Match: XP_023538738.1 (histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.2 bits (705), Expect = 7.6e-71
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG XXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGNGRSDDNLALAELGFQIGDYLDVAII
Sbjct: 121 FGNGRSDDNLALAELGFQIGDYLDVAII 148

[Close]

BLAST of Carg23889 vs. NCBI nr
Match: XP_022147400.1 (histone deacetylase complex subunit SAP18 [Momordica charantia])

HSP 1 Score: 269.2 bits (687), Expect = 9.3e-69
Identity = 132/148 (89.19%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG           PRLEPVDREKTCPLLLRVFTK+G HHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRGPHVPPRPRLEPVDREKTCPLLLRVFTKVGGHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGNGR DD+LALAELGFQIGDYLDVAI+
Sbjct: 121 FGNGRLDDSLALAELGFQIGDYLDVAIL 148

[Close]

BLAST of Carg23889 vs. NCBI nr
Match: XP_004133896.1 (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN56569.1 hypothetical protein Csa_3G124880 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/148 (88.51%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG           PRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of Carg23889 vs. TAIR10
Match: AT2G45640.1 (SIN3 associated polypeptide P18)

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-46
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 48  PRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVK 107
           P+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVK
Sbjct: 28  PKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVK 87

Query: 108 EVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYL 167
           EV+  ARRRNA+LSFA VYP+  G + VREVG+T ++ N +  DD+  L+EL F+IGDYL
Sbjct: 88  EVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYL 147

Query: 168 DVAI 171
           DVAI
Sbjct: 148 DVAI 151

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BLAST of Carg23889 vs. Swiss-Prot
Match: sp|O64644|SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-45
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 48  PRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVK 107
           P+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVK
Sbjct: 28  PKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVK 87

Query: 108 EVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRS-DDNLALAELGFQIGDYL 167
           EV+  ARRRNA+LSFA VYP+  G + VREVG+T ++ N +  DD+  L+EL F+IGDYL
Sbjct: 88  EVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYL 147

Query: 168 DVAI 171
           DVAI
Sbjct: 148 DVAI 151

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BLAST of Carg23889 vs. Swiss-Prot
Match: sp|Q3T022|SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of Carg23889 vs. Swiss-Prot
Match: sp|O00422|SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of Carg23889 vs. Swiss-Prot
Match: sp|Q5RDT5|SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of Carg23889 vs. Swiss-Prot
Match: sp|O55128|SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.4e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of Carg23889 vs. TrEMBL
Match: tr|A0A0A0L6C9|A0A0A0L6C9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124880 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.0e-67
Identity = 131/148 (88.51%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG           PRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of Carg23889 vs. TrEMBL
Match: tr|A0A1S3AVL4|A0A1S3AVL4_CUCME (histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC103483322 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.4e-67
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGXXXXXXXXXXX RLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGXXXXXXXXXXXXRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of Carg23889 vs. TrEMBL
Match: tr|W9S5P2|W9S5P2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020767 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.8e-58
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG +E P+R      XXXXXXX PR EPVDREKTCPLLLRVFTKIG HH NEDFAVRGK
Sbjct: 1   MAGLSEGPKR------XXXXXXXGPRFEPVDREKTCPLLLRVFTKIGGHHANEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDATLRE+TDLVKEVA  ARRRNAKLSFA VYPD+HGRF+VREVGKTFS
Sbjct: 61  EPKDEVQIYTWKDATLREITDLVKEVASAARRRNAKLSFAFVYPDKHGRFLVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DDN ALAELGFQIGDYLDVAI+
Sbjct: 121 YGNGRLDDNKALAELGFQIGDYLDVAIL 142

[Close]

BLAST of Carg23889 vs. TrEMBL
Match: tr|M5X2P5|M5X2P5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G150900 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 113/148 (76.35%), Postives = 122/148 (82.43%), Query Frame = 0


Query: 24  MAGEAEAPRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA             PR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DD   LAELGF IGDYLDVAI+
Sbjct: 121 YGNGRLDDAKVLAELGFAIGDYLDVAIM 148

[Close]

BLAST of Carg23889 vs. TrEMBL
Match: tr|A0A2P5EI03|A0A2P5EI03_9ROSA (Sin3 associated polypeptide p OS=Trema orientalis OX=63057 GN=TorRG33x02_190110 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 7.1e-57
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 24  MAGEAE-APRRAYGXXXXXXXXXXXPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRG 83
           MAG +E AP+R              PR +PVDREKTCPLLLRVFTKIG+HH N+DFAVRG
Sbjct: 1   MAGVSEGAPKRG------LPPPPRGPRFDPVDREKTCPLLLRVFTKIGAHHSNDDFAVRG 60

Query: 84  KEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTF 143
           KEP+DEVQIYTWKDATLRE+TDLVKEVAP ARRRNAKLSFA VYPD+HGRF+VREVG+TF
Sbjct: 61  KEPKDEVQIYTWKDATLREITDLVKEVAPAARRRNAKLSFAFVYPDKHGRFLVREVGRTF 120

Query: 144 SFGNGRSDDNLALAELGFQIGDYLDVAII 172
           S+GNGR DD+ ALAELGFQIGDYLDVAI+
Sbjct: 121 SYGNGRLDDSKALAELGFQIGDYLDVAIL 143

The following BLAST results are available for this feature:

BLAST of Carg23889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943948.1	7.1e-85	100.00	histone deacetylase complex subunit SAP18-like [Cucurbita moschata]	[more]
XP_022974173.1	1.6e-84	99.42	histone deacetylase complex subunit SAP18-like [Cucurbita maxima]	[more]
XP_023538738.1	7.6e-71	99.32	histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]	[more]
XP_022147400.1	9.3e-69	89.19	histone deacetylase complex subunit SAP18 [Momordica charantia]	[more]
XP_004133896.1	3.0e-67	88.51	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN56569...	[more]

BLAST of Carg23889 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	1.6e-46	71.77	SIN3 associated polypeptide P18	[more]

BLAST of Carg23889 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64644\|SAP18_ARATH	2.9e-45	71.77	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
sp\|Q3T022\|SAP18_BOVIN	6.4e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
sp\|O00422\|SAP18_HUMAN	6.4e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
sp\|Q5RDT5\|SAP18_PONAB	6.4e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
sp\|O55128\|SAP18_MOUSE	8.4e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of Carg23889 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6C9\|A0A0A0L6C9_CUCSA	2.0e-67	88.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124880 PE=4 SV=1	[more]
tr\|A0A1S3AVL4\|A0A1S3AVL4_CUCME	4.4e-67	95.95	histone deacetylase complex subunit SAP18 OS=Cucumis melo OX=3656 GN=LOC10348332...	[more]
tr\|W9S5P2\|W9S5P2_9ROSA	3.8e-58	83.11	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020767 PE=4 SV=1	[more]
tr\|M5X2P5\|M5X2P5_PRUPE	1.1e-57	76.35	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G150900 PE=4 SV=1	[more]
tr\|A0A2P5EI03\|A0A2P5EI03_9ROSA	7.1e-57	76.51	Sin3 associated polypeptide p OS=Trema orientalis OX=63057 GN=TorRG33x02_190110 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23889-RA	Carg23889-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 52..170 e-value: 7.1E-40 score: 136.3
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 48..171
None	No IPR available	GENE3D	G3DSA:3.10.20.550		coord: 43..171 e-value: 1.3E-46 score: 159.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23889	Cla021281	Watermelon (97103) v1	carwmB0483
Carg23889	Csa3G124880	Cucumber (Chinese Long) v2	carcuB0518
Carg23889	MELO3C006160	Melon (DHL92) v3.5.1	carmeB0494
Carg23889	ClCG05G001990	Watermelon (Charleston Gray)	carwcgB0472
Carg23889	CSPI03G09290	Wild cucumber (PI 183967)	carcpiB0525
Carg23889	Cucsa.257900	Cucumber (Gy14) v1	carcgyB0559
Carg23889	CmaCh06G011170	Cucurbita maxima (Rimu)	carcmaB0679
Carg23889	CmoCh06G011440	Cucurbita moschata (Rifu)	carcmoB0661
Carg23889	Lsi05G019900	Bottle gourd (USVL1VR-Ls)	carlsiB442
Carg23889	Cp4.1LG08g01790	Cucurbita pepo (Zucchini)	carcpeB0687
Carg23889	CsGy3G009370	Cucumber (Gy14) v2	carcgybB0495
Carg23889	MELO3C006160.2	Melon (DHL92) v3.6.1	carmedB0500
Carg23889	CsaV3_3G009410	Cucumber (Chinese Long) v3	carcucB0524
Carg23889	Cla97C05G082440	Watermelon (97103) v2	carwmbB0511
Carg23889	Bhi01G000217	Wax gourd	carwgoB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23889	Melon (DHL92) v3.5.1	carmeB0493
Carg23889	Melon (DHL92) v3.6.1	carmedB0499
Carg23889	Watermelon (Charleston Gray)	carwcgB0471
Carg23889	Watermelon (97103) v1	carwmB0484
Carg23889	Watermelon (97103) v2	carwmbB0510
Carg23889	Silver-seed gourd	carcarB474
Carg23889	Silver-seed gourd	carcarB476
Carg23889	Cucumber (Gy14) v2	carcgybB0496
Carg23889	Cucumber (Gy14) v1	carcgyB0560
Carg23889	Cucurbita maxima (Rimu)	carcmaB0678
Carg23889	Cucurbita moschata (Rifu)	carcmoB0659
Carg23889	Cucurbita pepo (Zucchini)	carcpeB0684
Carg23889	Cucurbita pepo (Zucchini)	carcpeB0685
Carg23889	Wild cucumber (PI 183967)	carcpiB0526
Carg23889	Cucumber (Chinese Long) v2	carcuB0519
Carg23889	Cucumber (Chinese Long) v3	carcucB0525