CmaCh06G011170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G011170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Histone deacetylase complex subunit SAP18
Location	Cma_Chr06 : 7531832 .. 7534472 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGGTATCTCTTTCTTTCCCTCTCATCTTTTACTTTTAGGGTTTCTGTCCGTTCCATCATCATGTCAGTTTTAATTTTGGTGTTCATTAGCTTGTTTTTTAATCCATCTTCATCTTCAATCCGTTTCTCGTTTCTTCGTTCTAGAACTCTATTCTGATGATGATTATTTGGAACTTTGAGTATTGCCTTATTATGGCCTAACGATTCTGTTTTACATCGATAGCTATGTAAACATAGATAGCGTCTTTGACTTTCTATACTGAGTCATTTTACTTCTCTTCTTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTACGTTGTATTTTGATGCTGGCCTTTTGTTTTTATGAATTGTGTTACATTTTTGTGCAAAGTTGGAAGTGACTAAGTACCCGAAATCAAGTTTGTTTTCTAGATTAATCCATTAAGTATGAAATGAAATTCGTTGGACGCGGATTTTTTGTGTGAAATATTCATCTGTTTATGTCATTGTGGAGACCGATAGGATTTAGGCGTCGTATGAGAGGATAATTAAAGCAGGTTTCTCTGGTGTTGCGTTTCTACATTTAGGTTATGAGGCATATTATATAGCTTATTGATGATCTACTCTCCTGGTTCTAAGTAATGCCACTTATTGGATTAAGGAACAGTCATTATGAAATTGAAATTTGCGTTAATTGCAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTGTTTCTCATCCCTTTTCAATCTTTTCTCCTTGCACGCTTCGCATGACATAATTACGAATGATCTATATCATTTTGAGTTCATGTTTTTTTTTTGTTTAACGCCACACAATTTCCCTTACGGCTGTCCTTGAACTTATGTTGTGAGTTTGTGTGTTCATTGTTTTTTTCGGGGTGGGGTCACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTACCTCTCTCCATTTCTGTGCTCTCTTTCTTCCACTCTGACTTGAATGCACACTTTTATTTATGTTTTCCGGATGTTACATTGGAAATATTCATGATCTTTTGCCCTTTTTACTTCGTTGAGTTTTGATTATATGAAATTGAAGATGTAAGTTGATTAGTGGTAAAATCATCAGTTATTACCAAAACTCTGCTAGAAATTACCGAAAACCCATTAATTGTCCTAGAATTCGTCCCACTTAGTACTCAAAATCTAGCCTTAACATTACTGGAATTTGACCAGAAAAAAACTTGAATACTTTTACATGTTCAAGCAGCAAGGACCTAACAGCAAACAAACCTAGCCTAAAGAAATGCTTATTTACAAAAACAGTAATGTGTTGAACTACAAGAATGCCATAAATGTCAAAGGAAAAAAGACAACTGAACTGAGGGAGGGGATTGAAGTTATTATTTATTCTAGTCTAGATATCAATCCAATGAACTTAAAATTGTAGTGTTGAATTTGACTAAACTAAATCAGGAAATACAAAATAAATATTTCCCTATTGAGTATTATGTTGACAGATGTTATGTCTACGACTTGTTTGATCGTGACAATACTTTCAAACTGGAGTTTTCCCATAGTCTTAAGAAGTTTGTAGTGCTCAGTTTTGTGAAAAGGTGGGTAGTTCTGATTCTAGGACACGTATGAACACATCGAACGTGCTTAACTAGTGCCTGCGTTGCATATTCTTGCACGACTGTGATGGGCAACTGCGATGGATAAGCTGCCCATTTAATTTCATTTAGTGCTTTTAAAGGATCACTCGCTAATTACATTGTTGAATGAAATGACACAAAATCTTCTGTACTGAACACCCTTTCTTCATGCCCTGCCAGTTTGCATTTTCCTTCACTGCAAATACCTCGTATATCTGCTTTATATTTCACGCACTTATCGAATTAGATTGACCTATTTCTTAAAAGAACATAAAGTAATTTACGATTATAAACAAAGGTATGAATAAAGTGAACTATTATACGAGCCTCCAAGTAATACAGATTCTGTTTCTTTATGTGAAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTAAAACAAACATGGGTTTTGCTTTTTGCCATCTCAGTCCCTTCCTGTATTTCGTCTCATACTTGCACCACTTTTTCCCTGCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAGGCTTCAATGTTGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTCTTTTAGGTGGAATCATGA

mRNA sequence

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTGGAATCATGA

Coding sequence (CDS)

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTGGAATCATGA

Protein sequence

MRPPGLAYKLQKLPEVADNTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQVES

Homology

[Close]

BLAST of CmaCh06G011170 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.3e-43
Identity = 91/142 (64.08%), Postives = 108/142 (76.06%), Query Frame = 1


Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQV 163
            ++ N +  DD+  L+EL F++
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEI 143

[Close]

BLAST of CmaCh06G011170 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of CmaCh06G011170 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of CmaCh06G011170 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of CmaCh06G011170 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]

BLAST of CmaCh06G011170 vs. TrEMBL
Match: A0A0A0L6C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.3e-69
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG PPRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           FGN R DD+LAL ELGFQ+
Sbjct: 121 FGNRRLDDSLALGELGFQI 139

[Close]

BLAST of CmaCh06G011170 vs. TrEMBL
Match: M5X2P5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.6e-55
Identity = 108/139 (77.70%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           +GNGR DD   LAELGF +
Sbjct: 121 YGNGRLDDAKVLAELGFAI 139

[Close]

BLAST of CmaCh06G011170 vs. TrEMBL
Match: W9S5P2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020767 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-55
Identity = 110/139 (79.14%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG +E P+R    PPR P      R EPVDREKTCPLLLRVFTKIG HH NEDFAVRGK
Sbjct: 1   MAGLSEGPKRPPPPPPRGP------RFEPVDREKTCPLLLRVFTKIGGHHANEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDATLRE+TDLVKEVA  ARRRNAKLSFA VYPD+HGRF+VREVGKTFS
Sbjct: 61  EPKDEVQIYTWKDATLREITDLVKEVASAARRRNAKLSFAFVYPDKHGRFLVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           +GNGR DDN ALAELGFQ+
Sbjct: 121 YGNGRLDDNKALAELGFQI 133

[Close]

BLAST of CmaCh06G011170 vs. TrEMBL
Match: A0A151UCC8_CAJCA (Histone deacetylase complex subunit SAP18 OS=Cajanus cajan GN=KK1_021205 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.2e-53
Identity = 107/132 (81.06%), Postives = 116/132 (87.88%), Query Frame = 1


Query: 33  RAYGAPPRAPHAPP--RPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 92
           RA   PPR P  PP  RPRLEPVDREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 11  RALPPPPRGPPPPPPSRPRLEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQ 70

Query: 93  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSD 152
           IYTWKDATLRELTDLVKEVAP ARRRNAKLSFA V+PD++GRF V+EVGKT S+GNGR D
Sbjct: 71  IYTWKDATLRELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLD 130

Query: 153 DNLALAELGFQV 163
           D+ ALAELGF++
Sbjct: 131 DSKALAELGFEI 142

[Close]

BLAST of CmaCh06G011170 vs. TrEMBL
Match: C6T2R6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G019600 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 107/132 (81.06%), Postives = 115/132 (87.12%), Query Frame = 1


Query: 33  RAYGAPPRAPHAPP--RPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 92
           RA   PPR P  PP  RPRLEPVDREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 11  RALPPPPRGPPPPPPSRPRLEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQ 70

Query: 93  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSD 152
           IYTWKDATLRELTDLVKEVAP ARRRNAKLSFA V+PD++GRF V+EVGKT S+GNGR D
Sbjct: 71  IYTWKDATLRELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLD 130

Query: 153 DNLALAELGFQV 163
           D  ALAELGF++
Sbjct: 131 DGKALAELGFEI 142

[Close]

BLAST of CmaCh06G011170 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 175.6 bits (444), Expect = 2.4e-44
Identity = 91/142 (64.08%), Postives = 108/142 (76.06%), Query Frame = 1


Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQV 163
            ++ N +  DD+  L+EL F++
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEI 143

[Close]

BLAST of CmaCh06G011170 vs. NCBI nr
Match: gi|659075396|ref|XP_008438121.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 132/139 (94.96%), Postives = 135/139 (97.12%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           FGN R DD+LAL ELGFQ+
Sbjct: 121 FGNRRLDDSLALGELGFQI 139

[Close]

BLAST of CmaCh06G011170 vs. NCBI nr
Match: gi|449432217|ref|XP_004133896.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-68
Identity = 130/139 (93.53%), Postives = 133/139 (95.68%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG PPRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           FGN R DD+LAL ELGFQ+
Sbjct: 121 FGNRRLDDSLALGELGFQI 139

[Close]

BLAST of CmaCh06G011170 vs. NCBI nr
Match: gi|645253992|ref|XP_008232830.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume])

HSP 1 Score: 225.7 bits (574), Expect = 5.8e-56
Identity = 108/139 (77.70%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA     R P +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGPRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTW+DA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWRDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           +GNGR DD   LAELGF +
Sbjct: 121 YGNGRLDDAKVLAELGFAI 139

[Close]

BLAST of CmaCh06G011170 vs. NCBI nr
Match: gi|1009162262|ref|XP_015899343.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Ziziphus jujuba])

HSP 1 Score: 225.7 bits (574), Expect = 5.8e-56
Identity = 112/140 (80.00%), Postives = 120/140 (85.71%), Query Frame = 1


Query: 23  EMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRG 82
           EMAG A+AP+R    P R P      R EPVDREKTCPLLLRVFTKIGSHH NEDFAVRG
Sbjct: 42  EMAGVADAPKRTLPPPLRGP------RFEPVDREKTCPLLLRVFTKIGSHHANEDFAVRG 101

Query: 83  KEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTF 142
           KEP+DEVQIYTWKDATLRE+TDLVKEVAP ARRRNAKLSFA VYPD+HGRF+VREVGKTF
Sbjct: 102 KEPKDEVQIYTWKDATLREITDLVKEVAPAARRRNAKLSFAFVYPDKHGRFLVREVGKTF 161

Query: 143 SFGNGRSDDNLALAELGFQV 163
           S+GNGR DD  ALAELGFQ+
Sbjct: 162 SYGNGRLDDGKALAELGFQI 175

[Close]

BLAST of CmaCh06G011170 vs. NCBI nr
Match: gi|596010175|ref|XP_007218562.1| (hypothetical protein PRUPE_ppa012935mg [Prunus persica])

HSP 1 Score: 223.0 bits (567), Expect = 3.8e-55
Identity = 108/139 (77.70%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQV 163
           +GNGR DD   LAELGF +
Sbjct: 121 YGNGRLDDAKVLAELGFAI 139

The following BLAST results are available for this feature:

BLAST of CmaCh06G011170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	4.3e-43	64.08	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_BOVIN	2.6e-24	50.44	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_HUMAN	2.6e-24	50.44	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_PONAB	2.6e-24	50.44	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]
SAP18_MOUSE	3.5e-24	50.44	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]

BLAST of CmaCh06G011170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C9_CUCSA	9.3e-69	93.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1	[more]
M5X2P5_PRUPE	2.6e-55	77.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1	[more]
W9S5P2_9ROSA	3.4e-55	79.14	Uncharacterized protein OS=Morus notabilis GN=L484_020767 PE=4 SV=1	[more]
A0A151UCC8_CAJCA	3.2e-53	81.06	Histone deacetylase complex subunit SAP18 OS=Cajanus cajan GN=KK1_021205 PE=4 SV...	[more]
C6T2R6_SOYBN	4.2e-53	81.06	Uncharacterized protein OS=Glycine max GN=GLYMA_03G019600 PE=2 SV=1	[more]

BLAST of CmaCh06G011170 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	2.4e-44	64.08	SIN3 associated polypeptide P18	[more]

BLAST of CmaCh06G011170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075396\|ref\|XP_008438121.1\|	1.2e-69	94.96	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]	[more]
gi\|449432217\|ref\|XP_004133896.1\|	1.3e-68	93.53	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus]	[more]
gi\|645253992\|ref\|XP_008232830.1\|	5.8e-56	77.70	PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume]	[more]
gi\|1009162262\|ref\|XP_015899343.1\|	5.8e-56	80.00	PREDICTED: histone deacetylase complex subunit SAP18 [Ziziphus jujuba]	[more]
gi\|596010175\|ref\|XP_007218562.1\|	3.8e-55	77.70	hypothetical protein PRUPE_ppa012935mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G011170.1	CmaCh06G011170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 15..162 score: 2.5
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 52..162 score: 9.1
None	No IPR available	PANTHER	PTHR13082:SF0	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18	coord: 15..162 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G011170	Cucsa.257900	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G011170	Cla021281	Watermelon (97103) v1	cmawmB798
CmaCh06G011170	Csa3G124880	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G011170	MELO3C006160	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G011170	ClCG05G001990	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G011170	CSPI03G09290	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G011170	CmoCh06G011440	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G011170	Lsi05G019900	Bottle gourd (USVL1VR-Ls)	cmalsiB764
CmaCh06G011170	Cp4.1LG08g01790	Cucurbita pepo (Zucchini)	cmacpeB854
CmaCh06G011170	MELO3C006160.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G011170	CsaV3_3G009410	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G011170	Cla97C05G082440	Watermelon (97103) v2	cmawmbB856
CmaCh06G011170	Bhi01G000217	Wax gourd	cmawgoB1016
CmaCh06G011170	CsGy3G009370	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G011170	Carg23889	Silver-seed gourd	carcmaB0679

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G011170	Cucumber (Chinese Long) v3	cmacucB0991
CmaCh06G011170	Cucumber (Chinese Long) v3	cmacucB0996
CmaCh06G011170	Watermelon (97103) v2	cmawmbB837
CmaCh06G011170	Watermelon (97103) v2	cmawmbB864
CmaCh06G011170	Cucurbita maxima (Rimu)	cmacmaB285
CmaCh06G011170	Cucurbita maxima (Rimu)	cmacmaB370
CmaCh06G011170	Cucurbita maxima (Rimu)	cmacmaB556
CmaCh06G011170	Cucumber (Gy14) v1	cgycmaB0840
CmaCh06G011170	Cucumber (Gy14) v1	cgycmaB1007
CmaCh06G011170	Cucurbita moschata (Rifu)	cmacmoB811
CmaCh06G011170	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G011170	Cucurbita moschata (Rifu)	cmacmoB839
CmaCh06G011170	Wild cucumber (PI 183967)	cmacpiB854
CmaCh06G011170	Wild cucumber (PI 183967)	cmacpiB856
CmaCh06G011170	Cucumber (Chinese Long) v2	cmacuB841
CmaCh06G011170	Melon (DHL92) v3.5.1	cmameB748
CmaCh06G011170	Watermelon (Charleston Gray)	cmawcgB744
CmaCh06G011170	Watermelon (97103) v1	cmawmB810
CmaCh06G011170	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G011170	Cucurbita pepo (Zucchini)	cmacpeB825
CmaCh06G011170	Bottle gourd (USVL1VR-Ls)	cmalsiB743
CmaCh06G011170	Cucumber (Gy14) v2	cgybcmaB696
CmaCh06G011170	Cucumber (Gy14) v2	cgybcmaB853
CmaCh06G011170	Melon (DHL92) v3.6.1	cmamedB848
CmaCh06G011170	Silver-seed gourd	carcmaB0317
CmaCh06G011170	Silver-seed gourd	carcmaB0877