CmoCh06G011440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G011440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone deacetylase complex subunit SAP18
Location	Cmo_Chr06 : 8780903 .. 8783749 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGGTATCTCTTTCTTTCCTTCTCATCTTTTACTTTTAGGGTTTCTGTCCGTTCCATCATCATGTCAGTTTTAATTTTGGTGTTCATTAGCTTGTTTTTGAATCCATCTTCATCTTCAATCGGTTTCTCGTTTCTTCGTTCTAGAACGCTATAGAAATTGCATTATTCTGATGATGATTATTTGGAACTTTGAGTATTGCCTTATTCTGGCTTAACGATTCTGTTTTACATCGATAGCTATGTAAACATAGATAGCGTGTTTGACTTTCTATACTGAGTCATTTTACTTCTCTTCTTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTACGTTGTATTTTTGATGCTGGCCTTTTGTTTTTATGAATTGTGTTACATTTTTGTGCAAAGTTGGAAGTGACTAAGTACCCGAAAGCAAGTTTGTTTTCTAGATTAATCCGTTAAGTATGAAATGAAATTCGTTGGACGCGGATTTTTTGTGTGAAATATTCATCTGTTTATGTCATTGTGGAGACCGATAGGATTTAGGCGTCGGATGAGAGGATAATTAAAGCAGATTTCTCTGGTGTTGCGTTTCTACATTTAGGTTATGAGGCATATCATATAGCTTATTGATGATCTACTCTCCTGGTTCTAAGTAATGCCACTTATTGGATTAAGGAACAGTCATTATTAAATTGAAATTTGCGTTAATTGCAGATTGGGAGTCATCATTTCAATGAAGACTTCGCCGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTGTTTCTCATCCCTTTTCAATCATTTCTCCTTGCACGCTTCGCATGACGTAATTACGAATGATCTATATCATTTTTAGTTCATGTTTTTTTGTTAAATGCCACACTGTTTACCTTACTGCTGTCCTTAAACTTATGTTGTGAGTTTGTGTGTTCGTTTTTTTTTTCGGGGGTGGGGTCACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTACCTCTCTCCATTTCTGTGCTCTCTTTCTTCCACTCTGACTTGAATGCACACTTTTATTTATGTTTTCAGGATGTTACATTGGAAATATTCATGATCTTTCGCCCTTTTTACTTCGTTGAGTTTCGATTATATGAAATTGAAGATGTAAGTTGATTAGTGGTAAAATCATCAGTTATTACCAAAACTCTGCTAGAAATTACCCAAAACCCATTAATTGTCCTAGAATTCGTCCCACTTGGTACTCAAAATCTAGTCTTAACATTACTGGAATTTGACCAGAAAAAAACTTGAATACTTTTAACATGTTCAAGCATCAAGGACCAAACAGCAAACAAACCTAGCCTAGAGAAATGCTTATCTACAAAATCAGTAATGTGTTGAACTACAAGAATGCCATAAATGTCAAAGAAAAAAAGACAACTGAACTAAGGGAGGAGATTGAAGTTATTTATTCTAGTGTTGAATTTGACTAAACTAAATCTGGAAATACAAAATAAATATTTCCCTATTGAGTATTATGTTGACAGATGTTATGTCTACGACTTGTTTGATCGTGACAATACTTTCAAACTGGAGTTTTCCCATAGTCTTAAGAAGTTTGTAGCGCTCAGTTTTGTGAAAAGGTGGGTAGTTCTGATTCTAGGACATGTATGAACACATCGAACGGGCTTAACTAGTGCCTACGTTGCATATTCTTGCACGGCTGTGATGGATAAGCTGCCCATTTAATTTCATTTAGTGCTTTTAAAGGATCACTTGCTAATTACATGGTTGTTGAATGAAATGACACAAAATCTTCTGTACTAAACACCCTTTCTTCATGCCCTGCCAGTTTGCATTTTCCTTCACTGCAAATACCTCTGTATATCTGCTAGGTGAATCGAATTAGATTGACCTATTTCTTAAAAGAACATAAAGTACGATTATAAACAAAGGTATGAAGAAAGTGAACTATTATACGAGCCTCCGAGTAATACAGATTCTGTTTCTTTACGTGAAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTAAAACAAACATGGGTTTTGTTTTTTGCCATCTCATTCCCCTCCTGTATTTTGTCGCGTACTTACGACACTTTTTCCCTGCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAAGCTTCAATGTCGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTTGTGTTGTGTTGTTCCCTTGGTCTTTCAGGTGGAATCATGATAGTCATCTGTCTTGAATATGAAATCAATTGAGGAGTATGTTATTCTGTTTTACATTTCTTCAGATTAAACACCTCGTCATGAATGTGACATCAATTTGCCATTTTGGGTACAAGAAGCCCATTTGATAACACTAGGAAATTAGTCTCTTGCTTGCTAGTTTAGTCTTATTTAGATTGTTAAGAGTTGTATTTTATTTTAGAACAAAGGGTTTCTTTTAGTTTAATTTCGCC

mRNA sequence

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCCGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAAGCTTCAATGTCGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTTGTGTTGTGTTGTTCCCTTGGTCTTTCAGGTGGAATCATGATAGTCATCTGTCTTGAATATGAAATCAATTGAGGAGTATGTTATTCTGTTTTACATTTCTTCAGATTAAACACCTCGTCATGAATGTGACATCAATTTGCCATTTTGGGTACAAGAAGCCCATTTGATAACACTAGGAAATTAGTCTCTTGCTTGCTAGTTTAGTCTTATTTAGATTGTTAAGAGTTGTATTTTATTTTAGAACAAAGGGTTTCTTTTAGTTTAATTTCGCC

Coding sequence (CDS)

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGAAAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCAAGAGCCCCTCATGCGCCTCCTCGTCCTCGCTTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCCGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTGGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGATCGGAGATTACTTGGACGTGGCAATTATATAG

Homology

[Close]

BLAST of CmoCh06G011440 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-48
Identity = 100/150 (66.67%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQIGDYLDVAI 171
            ++ N +  DD+  L+EL F+IGDYLDVAI
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmoCh06G011440 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of CmoCh06G011440 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of CmoCh06G011440 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of CmoCh06G011440 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQIGDYLDVA 170
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQIGDYLD+A
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQIGDYLDIA 137

[Close]

BLAST of CmoCh06G011440 vs. TrEMBL
Match: A0A0A0L6C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 7.7e-74
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG PPRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of CmoCh06G011440 vs. TrEMBL
Match: M5X2P5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 117/148 (79.05%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DD   LAELGF IGDYLDVAI+
Sbjct: 121 YGNGRLDDAKVLAELGFAIGDYLDVAIM 148

[Close]

BLAST of CmoCh06G011440 vs. TrEMBL
Match: W9S5P2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020767 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 119/148 (80.41%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG +E P+R    PPR P      R EPVDREKTCPLLLRVFTKIG HH NEDFAVRGK
Sbjct: 1   MAGLSEGPKRPPPPPPRGP------RFEPVDREKTCPLLLRVFTKIGGHHANEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDATLRE+TDLVKEVA  ARRRNAKLSFA VYPD+HGRF+VREVGKTFS
Sbjct: 61  EPKDEVQIYTWKDATLREITDLVKEVASAARRRNAKLSFAFVYPDKHGRFLVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DDN ALAELGFQIGDYLDVAI+
Sbjct: 121 YGNGRLDDNKALAELGFQIGDYLDVAIL 142

[Close]

BLAST of CmoCh06G011440 vs. TrEMBL
Match: A0A151UCC8_CAJCA (Histone deacetylase complex subunit SAP18 OS=Cajanus cajan GN=KK1_021205 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-58
Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 33  RAYGAPPRAPHAPP--RPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 92
           RA   PPR P  PP  RPRLEPVDREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 11  RALPPPPRGPPPPPPSRPRLEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQ 70

Query: 93  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSD 152
           IYTWKDATLRELTDLVKEVAP ARRRNAKLSFA V+PD++GRF V+EVGKT S+GNGR D
Sbjct: 71  IYTWKDATLRELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLD 130

Query: 153 DNLALAELGFQIGDYLDVAII 172
           D+ ALAELGF+IGDYLDVAI+
Sbjct: 131 DSKALAELGFEIGDYLDVAIL 151

[Close]

BLAST of CmoCh06G011440 vs. TrEMBL
Match: C6T2R6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G019600 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.9e-58
Identity = 116/141 (82.27%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 33  RAYGAPPRAPHAPP--RPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 92
           RA   PPR P  PP  RPRLEPVDREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 11  RALPPPPRGPPPPPPSRPRLEPVDREKTCPLLLRVFTKIGSHHSMEDFAVRGKEPKDEVQ 70

Query: 93  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSD 152
           IYTWKDATLRELTDLVKEVAP ARRRNAKLSFA V+PD++GRF V+EVGKT S+GNGR D
Sbjct: 71  IYTWKDATLRELTDLVKEVAPAARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGNGRLD 130

Query: 153 DNLALAELGFQIGDYLDVAII 172
           D  ALAELGF+IGDYLDVAI+
Sbjct: 131 DGKALAELGFEIGDYLDVAIL 151

[Close]

BLAST of CmoCh06G011440 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 191.4 bits (485), Expect = 4.5e-49
Identity = 100/150 (66.67%), Postives = 116/150 (77.33%), Query Frame = 1


Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQIGDYLDVAI 171
            ++ N +  DD+  L+EL F+IGDYLDVAI
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of CmoCh06G011440 vs. NCBI nr
Match: gi|659075396|ref|XP_008438121.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo])

HSP 1 Score: 288.1 bits (736), Expect = 1.0e-74
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYGAPPRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of CmoCh06G011440 vs. NCBI nr
Match: gi|449432217|ref|XP_004133896.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAGEAEAPRRAYG PPRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFV+REVGKTFS
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVLREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           FGN R DD+LAL ELGFQIGDYLDVAII
Sbjct: 121 FGNRRLDDSLALGELGFQIGDYLDVAII 148

[Close]

BLAST of CmoCh06G011440 vs. NCBI nr
Match: gi|1009162262|ref|XP_015899343.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Ziziphus jujuba])

HSP 1 Score: 243.0 bits (619), Expect = 3.7e-61
Identity = 122/154 (79.22%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 18  ENTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNED 77
           E    EMAG A+AP+R    P R P      R EPVDREKTCPLLLRVFTKIGSHH NED
Sbjct: 37  ERERVEMAGVADAPKRTLPPPLRGP------RFEPVDREKTCPLLLRVFTKIGSHHANED 96

Query: 78  FAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVRE 137
           FAVRGKEP+DEVQIYTWKDATLRE+TDLVKEVAP ARRRNAKLSFA VYPD+HGRF+VRE
Sbjct: 97  FAVRGKEPKDEVQIYTWKDATLREITDLVKEVAPAARRRNAKLSFAFVYPDKHGRFLVRE 156

Query: 138 VGKTFSFGNGRSDDNLALAELGFQIGDYLDVAII 172
           VGKTFS+GNGR DD  ALAELGFQIGDYLDVAI+
Sbjct: 157 VGKTFSYGNGRLDDGKALAELGFQIGDYLDVAIL 184

[Close]

BLAST of CmoCh06G011440 vs. NCBI nr
Match: gi|645253992|ref|XP_008232830.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 117/148 (79.05%), Postives = 128/148 (86.49%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG A+AP+RA     R P +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGPRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTW+DA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG FVV+EVG+T S
Sbjct: 61  EPKDEVQIYTWRDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHGHFVVKEVGRTLS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DD   LAELGF IGDYLDVAI+
Sbjct: 121 YGNGRLDDAKVLAELGFAIGDYLDVAIM 148

[Close]

BLAST of CmoCh06G011440 vs. NCBI nr
Match: gi|703138466|ref|XP_010106748.1| (hypothetical protein L484_020767 [Morus notabilis])

HSP 1 Score: 238.8 bits (608), Expect = 7.0e-60
Identity = 119/148 (80.41%), Postives = 127/148 (85.81%), Query Frame = 1


Query: 24  MAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 83
           MAG +E P+R    PPR P      R EPVDREKTCPLLLRVFTKIG HH NEDFAVRGK
Sbjct: 1   MAGLSEGPKRPPPPPPRGP------RFEPVDREKTCPLLLRVFTKIGGHHANEDFAVRGK 60

Query: 84  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFS 143
           EP+DEVQIYTWKDATLRE+TDLVKEVA  ARRRNAKLSFA VYPD+HGRF+VREVGKTFS
Sbjct: 61  EPKDEVQIYTWKDATLREITDLVKEVASAARRRNAKLSFAFVYPDKHGRFLVREVGKTFS 120

Query: 144 FGNGRSDDNLALAELGFQIGDYLDVAII 172
           +GNGR DDN ALAELGFQIGDYLDVAI+
Sbjct: 121 YGNGRLDDNKALAELGFQIGDYLDVAIL 142

The following BLAST results are available for this feature:

BLAST of CmoCh06G011440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	8.0e-48	66.67	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_BOVIN	6.3e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_HUMAN	6.3e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_PONAB	6.3e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]
SAP18_MOUSE	8.3e-29	53.72	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]

BLAST of CmoCh06G011440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C9_CUCSA	7.7e-74	94.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1	[more]
M5X2P5_PRUPE	4.8e-60	79.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1	[more]
W9S5P2_9ROSA	4.8e-60	80.41	Uncharacterized protein OS=Morus notabilis GN=L484_020767 PE=4 SV=1	[more]
A0A151UCC8_CAJCA	4.5e-58	82.27	Histone deacetylase complex subunit SAP18 OS=Cajanus cajan GN=KK1_021205 PE=4 SV...	[more]
C6T2R6_SOYBN	5.9e-58	82.27	Uncharacterized protein OS=Glycine max GN=GLYMA_03G019600 PE=2 SV=1	[more]

BLAST of CmoCh06G011440 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	4.5e-49	66.67	SIN3 associated polypeptide P18	[more]

BLAST of CmoCh06G011440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075396\|ref\|XP_008438121.1\|	1.0e-74	95.95	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]	[more]
gi\|449432217\|ref\|XP_004133896.1\|	1.1e-73	94.59	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus]	[more]
gi\|1009162262\|ref\|XP_015899343.1\|	3.7e-61	79.22	PREDICTED: histone deacetylase complex subunit SAP18 [Ziziphus jujuba]	[more]
gi\|645253992\|ref\|XP_008232830.1\|	1.1e-60	79.05	PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume]	[more]
gi\|703138466\|ref\|XP_010106748.1\|	7.0e-60	80.41	hypothetical protein L484_020767 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G011440.1	CmoCh06G011440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 15..171 score: 2.7
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 52..170 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G011440	Cucsa.257900	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G011440	CmaCh06G011170	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G011440	Cla021281	Watermelon (97103) v1	cmowmB793
CmoCh06G011440	Csa3G124880	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G011440	MELO3C006160	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G011440	ClCG05G001990	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G011440	CSPI03G09290	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G011440	Lsi05G019900	Bottle gourd (USVL1VR-Ls)	cmolsiB757
CmoCh06G011440	Cp4.1LG08g01790	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G011440	MELO3C006160.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G011440	CsaV3_3G009410	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G011440	Cla97C05G082440	Watermelon (97103) v2	cmowmbB833
CmoCh06G011440	Bhi01G000217	Wax gourd	cmowgoB1014
CmoCh06G011440	CsGy3G009370	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G011440	Carg23889	Silver-seed gourd	carcmoB0661

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G011440	Watermelon (97103) v2	cmowmbB809
CmoCh06G011440	Watermelon (97103) v2	cmowmbB836
CmoCh06G011440	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G011440	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh06G011440	Cucurbita moschata (Rifu)	cmocmoB486
CmoCh06G011440	Cucumber (Gy14) v1	cgycmoB0835
CmoCh06G011440	Cucumber (Gy14) v1	cgycmoB1007
CmoCh06G011440	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G011440	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G011440	Cucurbita maxima (Rimu)	cmacmoB911
CmoCh06G011440	Wild cucumber (PI 183967)	cmocpiB837
CmoCh06G011440	Wild cucumber (PI 183967)	cmocpiB839
CmoCh06G011440	Cucumber (Chinese Long) v2	cmocuB829
CmoCh06G011440	Melon (DHL92) v3.5.1	cmomeB737
CmoCh06G011440	Melon (DHL92) v3.5.1	cmomeB740
CmoCh06G011440	Watermelon (Charleston Gray)	cmowcgB745
CmoCh06G011440	Watermelon (97103) v1	cmowmB801
CmoCh06G011440	Watermelon (97103) v1	cmowmB796
CmoCh06G011440	Cucurbita pepo (Zucchini)	cmocpeB778
CmoCh06G011440	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G011440	Bottle gourd (USVL1VR-Ls)	cmolsiB735
CmoCh06G011440	Cucumber (Gy14) v2	cgybcmoB676
CmoCh06G011440	Cucumber (Gy14) v2	cgybcmoB834
CmoCh06G011440	Melon (DHL92) v3.6.1	cmomedB835
CmoCh06G011440	Melon (DHL92) v3.6.1	cmomedB842
CmoCh06G011440	Silver-seed gourd	carcmoB0322
CmoCh06G011440	Silver-seed gourd	carcmoB0852
CmoCh06G011440	Cucumber (Chinese Long) v3	cmocucB0975
CmoCh06G011440	Cucumber (Chinese Long) v3	cmocucB0980