Lsi05G016030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G016030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Structural constituent of ribosome protein
Location	chr05 : 23758485 .. 23760796 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGAGGAGAGGGTTTGCTTTTGCTAGCCCTCAATTTGTTTGGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCAAGGGGAGCCTTGGAAGCGAGAATGAAAGGGCAGTTCATTCAGATAGCATTGTAAATGGTTCATCCAGGCCTCAGATATCTCCATTGTTCCCTGATGGTAAACCTCATTCAGTTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGCAGTTTCTTGTGGCTTAGCAAGAGCATGGGAAGGGAGAGAGAAGGGCTGGTCTGGCTTTGAAAATAGATACTTTTTAGAGGATGAGGCTCATGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTACAAACTTGACCGAAGTTCCAAAGAGTTTGAAGAATATAGCCTTGATTTTCATCGGAAGAAAAAGTCTGTAAAGGAAAAGGAAGATATGCAGAAAAGCAGAAGCAAAGTCAATGATAAACTTGATAATTGTTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATGATGATGTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAACTTACTGCTCCTTACCATGAGCCATTTTGTCTGGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCATAATCTGGTATACACTCCAAGAAAGGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCACTGATAATGGGATTCATGTTAAGGTAAAAATTAAGCAGCAAAAGAGACCCAGAAAGTTGGAAGTCCACCTTTAGCATAGACGGATGAAGATCATGAGGTTGCCCTTTCGATGTAAGAGAACTTCCTTGATATACTAACGGCTAAGTAATATTGTTATGGATCCCCCTTCTCTGCCATGAACTTATTTTTATACTTCTGCCTTCTGGTAGTATTAATGATTTTGTTTTTCTTTTGTCAAGATGTTTCAGTATATAAAAAGTGCACAGTTTCATATCTGAAATAAAGAACTCTTGTAGAGTTTTCATCCCGGTCTAAAATTAAGGGTGCAACAACTATACTCATGTAGAACCACGCAGACACCGTTTGTCGAAGAAAACTCTCTCATCTACCCTCCTCACCGTCTGTGATCCCATCCTCCATTAGAAATGCCATTCCTTATTCTCCATGAACTTACACTGACCAACTCACGCTAGAATTTTTGGGGTTGAGAGAAGTATTGGATATTGCATGTGGATGGAAGTAAAAAGTAATTCTTCTTCTAGTTTTATAAATTGTTTACTAAGTTTCTACCACTTCACAGATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGCGCTTTAAGGTCTGAACTCAATCAGATATACTCAAAAATCACAGAACTCGAAATGGAAGTCAGTGAGCACTCTCTGGTAATTTCTGCAATTGAGCCACTTGACCCATCAAGAAGATGCTACAGAATGATCGGTGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGGAACAAAGAGGGACTCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAGAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAGGTGAAAGTTAAACTCTCAACCCCATGGTGAACTTTGATCATATTCTTGTAGTTCTGAACTTTTAATTTTATCCTGATGGTTCACTGTTATAAGCGTGTTTGTGTGAAATTTTGTTTCGACAACTTTCAGTTCAGTAGGAAGATTCCAGGACTTGTATGGTATATAGATGATTTTGGGGGGGGAAGGAAATTGAATGGGAACCAATTTTTCAGCGTTTTGATATGGAAATTTTTCTCTAATTTTTAGACTACTCTCTTCAAAATTCATTAGTTTGATTATGCTGCAATGGATTCTGTACTTGAGCTTCCAGATTCAACCTTCTTCCTTCTTAACATAAATTACAAAAGTAGTCTCTTCCAGTAAAG

mRNA sequence

ATGTTCTTGAGGAGAGGGTTTGCTTTTGCTAGCCCTCAATTTGTTTGGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCAAGGGGAGCCTTGGAAGCGAGAATGAAAGGGCAGTTCATTCAGATAGCATTGTAAATGGTTCATCCAGGCCTCAGATATCTCCATTGTTCCCTGATGGTAAACCTCATTCAGTTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGCAGTTTCTTGTGGCTTAGCAAGAGCATGGGAAGGGAGAGAGAAGGGCTGGTCTGGCTTTGAAAATAGATACTTTTTAGAGGATGAGGCTCATGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTACAAACTTGACCGAAGTTCCAAAGAGTTTGAAGAATATAGCCTTGATTTTCATCGGAAGAAAAAGTCTGTAAAGGAAAAGGAAGATATGCAGAAAAGCAGAAGCAAAGTCAATGATAAACTTGATAATTGTTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATGATGATGTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAACTTACTGCTCCTTACCATGAGCCATTTTGTCTGGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCATAATCTGGTATACACTCCAAGAAAGGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCACTGATAATGGGATTCATGTTAAGATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGCGCTTTAAGGTCTGAACTCAATCAGATATACTCAAAAATCACAGAACTCGAAATGGAAGTCAGTGAGCACTCTCTGGTAATTTCTGCAATTGAGCCACTTGACCCATCAAGAAGATGCTACAGAATGATCGGTGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGGAACAAAGAGGGACTCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAGAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAGGTGAAAGTTAAACTCTCAACCCCATGGTGAACTTTGATCATATTCTTGTAGTTCTGAACTTTTAATTTTATCCTGATGGTTCACTGTTATAAGCGTGTTTGTGTGAAATTTTGTTTCGACAACTTTCAGTTCAGTAGGAAGATTCCAGGACTTGTATGGTATATAGATGATTTTGGGGGGGGAAGGAAATTGAATGGGAACCAATTTTTCAGCGTTTTGATATGGAAATTTTTCTCTAATTTTTAGACTACTCTCTTCAAAATTCATTAGTTTGATTATGCTGCAATGGATTCTGTACTTGAGCTTCCAGATTCAACCTTCTTCCTTCTTAACATAAATTACAAAAGTAGTCTCTTCCAGTAAAG

Coding sequence (CDS)

ATGTTCTTGAGGAGAGGGTTTGCTTTTGCTAGCCCTCAATTTGTTTGGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCAAGGGGAGCCTTGGAAGCGAGAATGAAAGGGCAGTTCATTCAGATAGCATTGTAAATGGTTCATCCAGGCCTCAGATATCTCCATTGTTCCCTGATGGTAAACCTCATTCAGTTGCTTATGATGTTGAACTTGTAGATGATGATACTTGGGCAGTTTCTTGTGGCTTAGCAAGAGCATGGGAAGGGAGAGAGAAGGGCTGGTCTGGCTTTGAAAATAGATACTTTTTAGAGGATGAGGCTCATGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTACAAACTTGACCGAAGTTCCAAAGAGTTTGAAGAATATAGCCTTGATTTTCATCGGAAGAAAAAGTCTGTAAAGGAAAAGGAAGATATGCAGAAAAGCAGAAGCAAAGTCAATGATAAACTTGATAATTGTTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATGATGATGTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAACTTACTGCTCCTTACCATGAGCCATTTTGTCTGGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCATAATCTGGTATACACTCCAAGAAAGGGCGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCACTGATAATGGGATTCATGTTAAGATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGCGCTTTAAGGTCTGAACTCAATCAGATATACTCAAAAATCACAGAACTCGAAATGGAAGTCAGTGAGCACTCTCTGGTAATTTCTGCAATTGAGCCACTTGACCCATCAAGAAGATGCTACAGAATGATCGGTGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGGAACAAAGAGGGACTCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAGAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTAGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAGGTGAAAGTTAA

Protein sequence

MFLRRGFAFASPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDGKPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDKLDNCLASGHVKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKMASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDSGRKEGAAQGVLVGPAGES

Homology

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BLAST of Lsi05G016030 vs. Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.5e-43
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 319 MASSSESER-KEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPS 378
           MAS S S   +EP NEQ V NMY   RSEL+QIYS IT+LEM+VSEHSLVI+AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 379 RRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIR 438
           R+C+RMIGGVLVERTIKEVLPAVQRNK+GLEEV+ +L E LEKKKK++++ EAKYKIRI 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 439 KPDGEAKEEDSGRKEGAAQGVLVGPAGES 467
           K   E  +E   +KEG AQGVLVG A  S
Sbjct: 121 KQ--EDNKEGGNKKEGNAQGVLVGAASSS 147

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BLAST of Lsi05G016030 vs. Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-22
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 1


Query: 321 SSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRC 380
           SS     K  V+ + V   +  LR E   + SK  ELEME++EHSLVI  ++ +D +R+C
Sbjct: 11  SSGSGAGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 381 YRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRI---- 440
           YRM+GGVLVERT+KEVLPA++ NKE ++++I  L + L+ K KE+++   K+ IR+    
Sbjct: 71  YRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 130

Query: 441 RKPDGEAKEEDSGRKEGAAQGVLV 461
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKASSA-GVLV 153

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BLAST of Lsi05G016030 vs. Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-22
Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 1


Query: 321 SSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRC 380
           SS     K  V+ + V   +  LR E   + SK  ELEME++EHSLVI  ++ +D +R+C
Sbjct: 11  SSGSGTGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 381 YRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRI---- 440
           YRM+GGVLVERT+KEVLPA++ NKE ++++I  L + L+ K KE+++   K+ IR+    
Sbjct: 71  YRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 130

Query: 441 RKPDGEAKEEDSGRKEGAAQGVLV 461
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKASSA-GVLV 153

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BLAST of Lsi05G016030 vs. Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-22
Identity = 52/112 (46.43%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 325 SERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMI 384
           S++K+ + E  +   Y  L+S+  QI S+I+E E +V E+ LVI+AI+ L+ +R+C+RM+
Sbjct: 2   SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMV 61

Query: 385 GGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRI 437
           GGVLVERT+ EVLP +++N++G++EV+ +L+E L  K KE++D  A YKI+I
Sbjct: 62  GGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113

[Close]

BLAST of Lsi05G016030 vs. Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-22
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 1


Query: 321 SSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRC 380
           S      K  V+ + V   +  LR E   + SK  ELEME++EHSLVI  ++ +D +R+C
Sbjct: 11  SGGSGTGKGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKC 70

Query: 381 YRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRI---- 440
           YRM+GGVLVERT+KEVLPA++ NKE ++++I  L++ L+ K KE+++   K+ IR+    
Sbjct: 71  YRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGED 130

Query: 441 RKPDGEAKEEDSGRKEGAAQGVLV 461
            KP  +   E +G K  +A GVLV
Sbjct: 131 EKPAAKENSEGAGAKSSSA-GVLV 153

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BLAST of Lsi05G016030 vs. TrEMBL
Match: A0A0A0KSG6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638320 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 1.3e-160
Identity = 284/319 (89.03%), Postives = 299/319 (93.73%), Query Frame = 1


Query: 1   MFLRRGFAFASPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDG 60
           MFLRRGFAF SPQFV RACSFCSKA P GS+GSENER  HS+SI NGS RPQ++PLFPD 
Sbjct: 1   MFLRRGFAFTSPQFVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSCRPQLTPLFPDD 60

Query: 61  KPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDD 120
           KP SVAYDVELVDDDTWAVSCGLARAWE REKGWSGFENRY LEDEAHDPVDYCDSDFDD
Sbjct: 61  KPCSVAYDVELVDDDTWAVSCGLARAWEAREKGWSGFENRYSLEDEAHDPVDYCDSDFDD 120

Query: 121 IDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDKLDNCLASGH 180
           IDNMRIRGNLFYKLD++SKEFEE SLDFHRKKKS+KEKEDM K RSKVNDKLD CLASG 
Sbjct: 121 IDNMRIRGNLFYKLDQASKEFEECSLDFHRKKKSLKEKEDMVKRRSKVNDKLDKCLASGQ 180

Query: 181 VKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRV 240
           VKLPEH+KNKYVIVERENDDVEKKLRTPTFNQLT+PYHEPFCLDI+ISKASVRAC+IHRV
Sbjct: 181 VKLPEHLKNKYVIVERENDDVEKKLRTPTFNQLTSPYHEPFCLDIFISKASVRACIIHRV 240

Query: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGK 300
           TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRAL DDIHNL+YTPRKGERIEGK
Sbjct: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALGDDIHNLIYTPRKGERIEGK 300

Query: 301 LQIVLQSVTDNGIHVKIKM 320
           LQIVLQSV DNGI+V +K+
Sbjct: 301 LQIVLQSVIDNGINVTVKI 319

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BLAST of Lsi05G016030 vs. TrEMBL
Match: W9QM55_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004462 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 5.0e-91
Identity = 198/342 (57.89%), Postives = 238/342 (69.59%), Query Frame = 1


Query: 1   MFLRRGFAFA---SPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLF 60
           MFLRRG +FA    P F    C FCSKA+P      EN      DS+ N SS   +SPLF
Sbjct: 2   MFLRRGISFALKVKPHFQSSYCGFCSKAIPSSVFDKEN------DSVTNYSSNLHLSPLF 61

Query: 61  PDGKP-HSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYC-- 120
           PD KP H   YD+ELVD+D W +S GLA+AW  RE      E    L+ E  D VD    
Sbjct: 62  PDAKPSHLSGYDIELVDNDAWQLSSGLAQAW--RE------ETSSLLKKEIADSVDNNGS 121

Query: 121 -----DSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVN 180
                D DFDDIDNMRI GNLFYK+DR SKE+EEYS DFHR+KK  ++K D ++S+ K N
Sbjct: 122 QLGKGDPDFDDIDNMRIHGNLFYKIDRDSKEYEEYSFDFHRRKKPSQKKNDPEESKRKQN 181

Query: 181 D----KLDN---CLASGHVKLPEHVKNKYVIV----ERENDDV-EKKLRTPTFNQLTAPY 240
           D    K D+     AS   KLP+    K  ++    + ++  V +KKLRTPTFNQLT PY
Sbjct: 182 DSNEAKRDSPSVTAASTGEKLPKVANEKCGLMSPLGKTDSSSVGKKKLRTPTFNQLTGPY 241

Query: 241 HEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQ 300
           HEPFCLDIYISKASVRAC++HRVTSKVVAVAHSISKDMKFDL S ++ +AC AVG+VLAQ
Sbjct: 242 HEPFCLDIYISKASVRACIVHRVTSKVVAVAHSISKDMKFDLASTRNLAACEAVGSVLAQ 301

Query: 301 RALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKM 320
           RALADDIH++VYTPRKGER+EGKLQ+VLQS+ DNGI++K+K+
Sbjct: 302 RALADDIHDVVYTPRKGERLEGKLQVVLQSIIDNGINMKVKI 329

[Close]

BLAST of Lsi05G016030 vs. TrEMBL
Match: M5XP25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022034mg PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.3e-88
Identity = 197/348 (56.61%), Postives = 243/348 (69.83%), Query Frame = 1


Query: 1   MFLRRGFAFAS---PQFVWRACSFCSKALPKGSLGSENERAVH-SDSIVNGSSRPQISPL 60
           MF +RG  FAS   P F+ RA SF       G   +     +H S+ + N SS   +SPL
Sbjct: 1   MFFKRGITFASVVYPHFLSRARSF-------GPKSNTTIPILHRSEQVSNYSSSFHLSPL 60

Query: 61  FP-DGKPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYC- 120
           FP D KPHS +YD+ELVD D W VS GLA A  G E   S  E+ Y  E+   +PVD C 
Sbjct: 61  FPSDAKPHSDSYDIELVDHDAWLVSSGLALAGRGTEGTAS--ESSYLSEEVVDEPVDNCS 120

Query: 121 -----DSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVN 180
                D DFDDIDNMRIRG+LFYKLDR+SKEFEEY+ DFHR+KKS K+K+D ++ + K N
Sbjct: 121 LPVEGDPDFDDIDNMRIRGSLFYKLDRNSKEFEEYNFDFHRRKKSSKQKDDPKEIKRKSN 180

Query: 181 D----KLDNCLAS--GHVKLPEHVKNKYVIVERENDDV-EKKLRTPTFNQLTAPYHEPFC 240
           +    K D+ +       +    + N   + E +   V +KKLRTPT+NQLT P+HEPFC
Sbjct: 181 ELKESKTDSPIRDLFSRSEKQGRIANNSQLDEMDTACVGKKKLRTPTYNQLTGPFHEPFC 240

Query: 241 LDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALAD 300
           LDIYISKASVRAC+IHRVTSKVVAVAHSISKDMKFDL S ++++ACAAVGAVLAQRAL D
Sbjct: 241 LDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLGSTRNAAACAAVGAVLAQRALGD 300

Query: 301 DIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKMASSSESERKEP 331
           DIH+++YTPRKGER+EGKLQIVLQS+ DNGI+VK+K+    +  RK+P
Sbjct: 301 DIHDVIYTPRKGERLEGKLQIVLQSIIDNGINVKVKL---KQITRKKP 336

[Close]

BLAST of Lsi05G016030 vs. TrEMBL
Match: V4RZ77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005268mg PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 177/332 (53.31%), Postives = 222/332 (66.87%), Query Frame = 1


Query: 14  FVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDGKPHSVAYDVELVD 73
           FV R  S+CS+A        ENER   S S    SSR  +SPL     PH   Y+VELVD
Sbjct: 24  FVSRVTSYCSRA--SNDFIEENERPTSSRSY---SSRTNLSPLLSSKGPHFGGYNVELVD 83

Query: 74  DDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYK 133
           D+TW VS GLA AW G ++      +   ++D+        DSDFD+IDNMRIRG+LFYK
Sbjct: 84  DETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYK 143

Query: 134 LDRSSKEFEEYSLDFHRKKKS-VKE--KEDMQKSRSKVNDKLDNCLASGHVKLPEHVK-- 193
           LD+ SKEFEEYS DFHR+K S  KE  K+  +K  SK       C     +K     K  
Sbjct: 144 LDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKES 203

Query: 194 --------------NKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRA 253
                         +++  +   +D+VEK++RTPTFNQLTAPYHEPFCLDIYISKASVRA
Sbjct: 204 KRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRA 263

Query: 254 CVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKG 313
           C++HRVTSKVV VAHSISKDMKFDL S ++++ACAAVG +LAQRALADDIH++VYTPRKG
Sbjct: 264 CIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKG 323

Query: 314 ERIEGKLQIVLQSVTDNGIHVKIKMASSSESE 327
           E++EGKLQIVLQ++ DNG++VK+K+    + +
Sbjct: 324 EKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKK 350

[Close]

BLAST of Lsi05G016030 vs. TrEMBL
Match: A0A067G7J1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018389mg PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 177/332 (53.31%), Postives = 222/332 (66.87%), Query Frame = 1


Query: 14  FVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDGKPHSVAYDVELVD 73
           FV R  S+CS+A        ENER   S S    SSR  +SPL     PH   Y+VELVD
Sbjct: 24  FVSRVTSYCSRA--SNDFIEENERPTSSRSY---SSRTNLSPLLSSKGPHFGGYNVELVD 83

Query: 74  DDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYK 133
           D+TW VS GLA AW G ++      +   ++D+        DSDFD+IDNMRIRG+LFYK
Sbjct: 84  DETWQVSAGLAHAWRGLDEDKEAKSDVNVVDDDDDATSFEGDSDFDEIDNMRIRGDLFYK 143

Query: 134 LDRSSKEFEEYSLDFHRKKKS-VKE--KEDMQKSRSKVNDKLDNCLASGHVKLPEHVK-- 193
           LD+ SKEFEEYS DFHR+K S  KE  K+  +K  SK       C     +K     K  
Sbjct: 144 LDKDSKEFEEYSFDFHRRKSSKTKEGNKDSEKKEASKAKTDKKECQKKEALKRKSDAKES 203

Query: 194 --------------NKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRA 253
                         +++  +   +D+VEK++RTPTFNQLTAPYHEPFCLDIYISKASVRA
Sbjct: 204 KRKESPRPNLASRDDEFNKIVMSDDNVEKRVRTPTFNQLTAPYHEPFCLDIYISKASVRA 263

Query: 254 CVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKG 313
           C++HRVTSKVV VAHSISKDMKFDL S ++++ACAAVG +LAQRALADDIH++VYTPRKG
Sbjct: 264 CIVHRVTSKVVVVAHSISKDMKFDLDSTRNATACAAVGGILAQRALADDIHDVVYTPRKG 323

Query: 314 ERIEGKLQIVLQSVTDNGIHVKIKMASSSESE 327
           E++EGKLQIVLQ++ DNG++VK+K+    + +
Sbjct: 324 EKLEGKLQIVLQAIIDNGVNVKVKLKQRKQKK 350

[Close]

BLAST of Lsi05G016030 vs. TAIR10
Match: AT3G22450.1 (AT3G22450.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 254.6 bits (649), Expect = 1.2e-67
Identity = 138/252 (54.76%), Postives = 181/252 (71.83%), Query Frame = 1


Query: 69  VELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDDIDNMRIRG 128
           +E VDDD W VS  L++AW   +   +   +   ++      +D  D D D+IDNMRIRG
Sbjct: 49  IETVDDDVWHVSSSLSQAWRQFQAD-TAKNSPVTIQGVRETILDDEDPDHDEIDNMRIRG 108

Query: 129 NLFYKLDRSSKEFEEYSLDFHRKKKSVK-EKEDMQKSRSKVNDKLDNCLASGHVKLPEHV 188
           +LF+KLDR SKEFEEY+ DFHRK +    +KE  Q+  +K+       +   + K  +  
Sbjct: 109 DLFFKLDRGSKEFEEYNYDFHRKNQHKNAKKEQNQEEETKIKKDNKKEVRDEYKKRNDSF 168

Query: 189 KNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRVTSKVVAV 248
             +    +  N+ V+K+ RT TFNQLTAP+H PFCLDIYISK SVRACVIHRVTSKVV V
Sbjct: 169 TGE---TDHPNEAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTV 228

Query: 249 AHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQS 308
           AHSISKDMKFDL SR++ +ACAAVGAVLAQR+L DDIH+++YTPRKG++IEGKLQ+VLQ+
Sbjct: 229 AHSISKDMKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQA 288

Query: 309 VTDNGIHVKIKM 320
           + DNG++VK+K+
Sbjct: 289 LIDNGVNVKVKL 296

[Close]

BLAST of Lsi05G016030 vs. TAIR10
Match: AT3G22480.2 (AT3G22480.2 prefoldin 2)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-44
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 319 MASSSESER-KEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPS 378
           MAS S S   +EP NEQ V NMY   RSEL+QIYS IT+LEM+VSEHSLVI+AI+PLD S
Sbjct: 1   MASKSGSGGLREPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQS 60

Query: 379 RRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIR 438
           R+C+RMIGGVLVERTIKEVLPAVQRNK+GLEEV+ +L E LEKKKK++++ EAKYKIRI 
Sbjct: 61  RKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRIT 120

Query: 439 KPDGEAKEEDSGRKEGAAQGVLVGPAGES 467
           K   E  +E   +KEG AQGVLVG A  S
Sbjct: 121 KQ--EDNKEGGNKKEGNAQGVLVGAASSS 147

[Close]

BLAST of Lsi05G016030 vs. TAIR10
Match: AT1G08845.2 (AT1G08845.2 Ribosomal L18p/L5e family protein)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-23
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 1


Query: 202 EKKLRTP----TFNQLTAPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKF 261
           EKK + P    +F Q T  Y EPF LD++ISK  V A + HRVT + VAVA + SKD+K 
Sbjct: 112 EKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKA 171

Query: 262 DLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKI 318
            L SR D  AC ++G +L++RA   D++   YTPR  ++ EGK++ V+QS+ DNGI VKI
Sbjct: 172 VLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKI 231

[Close]

BLAST of Lsi05G016030 vs. TAIR10
Match: AT3G20230.1 (AT3G20230.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-20
Identity = 51/152 (33.55%), Postives = 94/152 (61.84%), Query Frame = 1


Query: 162 QKSRSKVNDKLDNCLASGHVKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPF 221
           Q S  K++ ++ + ++S  VK    V+  +    R   +  K+    ++ Q T  Y  PF
Sbjct: 34  QSSFPKLSIEIGSVISSPIVKKDSFVQAAWT--RRSRGEAAKRPNRKSWKQRTDMYMRPF 93

Query: 222 CLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALA 281
            L+++ S+  + A V+HR TSKV++VA + ++D++ ++ S  D+ AC  +G ++A+R++ 
Sbjct: 94  LLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIAERSME 153

Query: 282 DDIHNLVYTPRKGERIEGKLQIVLQSVTDNGI 314
            D++ + Y PRKGERIEGKL IV+ ++ ++GI
Sbjct: 154 ADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

[Close]

BLAST of Lsi05G016030 vs. TAIR10
Match: AT5G27820.1 (AT5G27820.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-07
Identity = 29/97 (29.90%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 217 YHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLA 276
           Y +P+ L ++ +   V A VIH  T+ V   A S  K ++  +   +D +A + +G +L 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 277 QRALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGI 314
           +R L  DI  +    +K +R  GK++ V+ SV + G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

[Close]

BLAST of Lsi05G016030 vs. NCBI nr
Match: gi|659118877|ref|XP_008459355.1| (PREDICTED: uncharacterized protein LOC103498514 [Cucumis melo])

HSP 1 Score: 575.9 bits (1483), Expect = 6.5e-161
Identity = 284/329 (86.32%), Postives = 301/329 (91.49%), Query Frame = 1


Query: 1   MFLRRGFAFASPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDG 60
           MFLRRGFAF SPQ V RACSFCSKA P GS+GSENER  HS+SI NGSSRPQ++PLFPD 
Sbjct: 1   MFLRRGFAFTSPQNVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSSRPQLTPLFPDD 60

Query: 61  KPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDD 120
           KP SVAYD+ELVDDDTWAVSCGLARAWEGREKGWSG ENRY LEDEAHDPVDYCDSDFDD
Sbjct: 61  KPRSVAYDIELVDDDTWAVSCGLARAWEGREKGWSGLENRYSLEDEAHDPVDYCDSDFDD 120

Query: 121 IDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDKLDNCLASGH 180
           IDNMRIRGNLFYKLDR SKEF+EYSLDFHRKKKS+KEKE+ +KSRSKVNDKLD CL SG 
Sbjct: 121 IDNMRIRGNLFYKLDRGSKEFDEYSLDFHRKKKSIKEKENREKSRSKVNDKLDKCLPSGQ 180

Query: 181 VKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRV 240
           VKLPEH+KNKYVIVERENDDVEKKLRTPTFNQLT  YHEPFCLDIYISKASVRAC+IHRV
Sbjct: 181 VKLPEHLKNKYVIVERENDDVEKKLRTPTFNQLTGLYHEPFCLDIYISKASVRACIIHRV 240

Query: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGK 300
           TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNL+YTPRKGERIEGK
Sbjct: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLIYTPRKGERIEGK 300

Query: 301 LQIVLQSVTDNGIHVKIKMASSSESERKE 330
           LQ+VLQSV DNGI+VK+K+       + E
Sbjct: 301 LQVVLQSVIDNGINVKVKIKQQKRPRKLE 329

[Close]

BLAST of Lsi05G016030 vs. NCBI nr
Match: gi|778707360|ref|XP_011656005.1| (PREDICTED: uncharacterized protein LOC101213193 [Cucumis sativus])

HSP 1 Score: 574.3 bits (1479), Expect = 1.9e-160
Identity = 284/319 (89.03%), Postives = 299/319 (93.73%), Query Frame = 1


Query: 1   MFLRRGFAFASPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLFPDG 60
           MFLRRGFAF SPQFV RACSFCSKA P GS+GSENER  HS+SI NGS RPQ++PLFPD 
Sbjct: 1   MFLRRGFAFTSPQFVLRACSFCSKAFPGGSIGSENERVAHSNSIANGSCRPQLTPLFPDD 60

Query: 61  KPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYCDSDFDD 120
           KP SVAYDVELVDDDTWAVSCGLARAWE REKGWSGFENRY LEDEAHDPVDYCDSDFDD
Sbjct: 61  KPCSVAYDVELVDDDTWAVSCGLARAWEAREKGWSGFENRYSLEDEAHDPVDYCDSDFDD 120

Query: 121 IDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDKLDNCLASGH 180
           IDNMRIRGNLFYKLD++SKEFEE SLDFHRKKKS+KEKEDM K RSKVNDKLD CLASG 
Sbjct: 121 IDNMRIRGNLFYKLDQASKEFEECSLDFHRKKKSLKEKEDMVKRRSKVNDKLDKCLASGQ 180

Query: 181 VKLPEHVKNKYVIVERENDDVEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACVIHRV 240
           VKLPEH+KNKYVIVERENDDVEKKLRTPTFNQLT+PYHEPFCLDI+ISKASVRAC+IHRV
Sbjct: 181 VKLPEHLKNKYVIVERENDDVEKKLRTPTFNQLTSPYHEPFCLDIFISKASVRACIIHRV 240

Query: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGK 300
           TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRAL DDIHNL+YTPRKGERIEGK
Sbjct: 241 TSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALGDDIHNLIYTPRKGERIEGK 300

Query: 301 LQIVLQSVTDNGIHVKIKM 320
           LQIVLQSV DNGI+V +K+
Sbjct: 301 LQIVLQSVIDNGINVTVKI 319

[Close]

BLAST of Lsi05G016030 vs. NCBI nr
Match: gi|703078547|ref|XP_010090920.1| (hypothetical protein L484_004462 [Morus notabilis])

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 198/342 (57.89%), Postives = 238/342 (69.59%), Query Frame = 1


Query: 1   MFLRRGFAFA---SPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLF 60
           MFLRRG +FA    P F    C FCSKA+P      EN      DS+ N SS   +SPLF
Sbjct: 2   MFLRRGISFALKVKPHFQSSYCGFCSKAIPSSVFDKEN------DSVTNYSSNLHLSPLF 61

Query: 61  PDGKP-HSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYC-- 120
           PD KP H   YD+ELVD+D W +S GLA+AW  RE      E    L+ E  D VD    
Sbjct: 62  PDAKPSHLSGYDIELVDNDAWQLSSGLAQAW--RE------ETSSLLKKEIADSVDNNGS 121

Query: 121 -----DSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVN 180
                D DFDDIDNMRI GNLFYK+DR SKE+EEYS DFHR+KK  ++K D ++S+ K N
Sbjct: 122 QLGKGDPDFDDIDNMRIHGNLFYKIDRDSKEYEEYSFDFHRRKKPSQKKNDPEESKRKQN 181

Query: 181 D----KLDN---CLASGHVKLPEHVKNKYVIV----ERENDDV-EKKLRTPTFNQLTAPY 240
           D    K D+     AS   KLP+    K  ++    + ++  V +KKLRTPTFNQLT PY
Sbjct: 182 DSNEAKRDSPSVTAASTGEKLPKVANEKCGLMSPLGKTDSSSVGKKKLRTPTFNQLTGPY 241

Query: 241 HEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQ 300
           HEPFCLDIYISKASVRAC++HRVTSKVVAVAHSISKDMKFDL S ++ +AC AVG+VLAQ
Sbjct: 242 HEPFCLDIYISKASVRACIVHRVTSKVVAVAHSISKDMKFDLASTRNLAACEAVGSVLAQ 301

Query: 301 RALADDIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKM 320
           RALADDIH++VYTPRKGER+EGKLQ+VLQS+ DNGI++K+K+
Sbjct: 302 RALADDIHDVVYTPRKGERLEGKLQVVLQSIIDNGINMKVKI 329

[Close]

BLAST of Lsi05G016030 vs. NCBI nr
Match: gi|596293289|ref|XP_007226643.1| (hypothetical protein PRUPE_ppa022034mg [Prunus persica])

HSP 1 Score: 334.3 bits (856), Expect = 3.3e-88
Identity = 197/348 (56.61%), Postives = 243/348 (69.83%), Query Frame = 1


Query: 1   MFLRRGFAFAS---PQFVWRACSFCSKALPKGSLGSENERAVH-SDSIVNGSSRPQISPL 60
           MF +RG  FAS   P F+ RA SF       G   +     +H S+ + N SS   +SPL
Sbjct: 1   MFFKRGITFASVVYPHFLSRARSF-------GPKSNTTIPILHRSEQVSNYSSSFHLSPL 60

Query: 61  FP-DGKPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYC- 120
           FP D KPHS +YD+ELVD D W VS GLA A  G E   S  E+ Y  E+   +PVD C 
Sbjct: 61  FPSDAKPHSDSYDIELVDHDAWLVSSGLALAGRGTEGTAS--ESSYLSEEVVDEPVDNCS 120

Query: 121 -----DSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVN 180
                D DFDDIDNMRIRG+LFYKLDR+SKEFEEY+ DFHR+KKS K+K+D ++ + K N
Sbjct: 121 LPVEGDPDFDDIDNMRIRGSLFYKLDRNSKEFEEYNFDFHRRKKSSKQKDDPKEIKRKSN 180

Query: 181 D----KLDNCLAS--GHVKLPEHVKNKYVIVERENDDV-EKKLRTPTFNQLTAPYHEPFC 240
           +    K D+ +       +    + N   + E +   V +KKLRTPT+NQLT P+HEPFC
Sbjct: 181 ELKESKTDSPIRDLFSRSEKQGRIANNSQLDEMDTACVGKKKLRTPTYNQLTGPFHEPFC 240

Query: 241 LDIYISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALAD 300
           LDIYISKASVRAC+IHRVTSKVVAVAHSISKDMKFDL S ++++ACAAVGAVLAQRAL D
Sbjct: 241 LDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLGSTRNAAACAAVGAVLAQRALGD 300

Query: 301 DIHNLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKMASSSESERKEP 331
           DIH+++YTPRKGER+EGKLQIVLQS+ DNGI+VK+K+    +  RK+P
Sbjct: 301 DIHDVIYTPRKGERLEGKLQIVLQSIIDNGINVKVKL---KQITRKKP 336

[Close]

BLAST of Lsi05G016030 vs. NCBI nr
Match: gi|1009141421|ref|XP_015888185.1| (PREDICTED: uncharacterized protein LOC107423173 [Ziziphus jujuba])

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 191/334 (57.19%), Postives = 225/334 (67.37%), Query Frame = 1


Query: 1   MFLRRGFAFA---SPQFVWRACSFCSKALPKGSLGSENERAVHSDSIVNGSSRPQISPLF 60
           MF RRG   A    P F+      CS A     +  E E   H   +    SR  +SPLF
Sbjct: 1   MFSRRGMILALALKPHFLSGVSCSCSNA-SSTVVNREAEVVTHFVPVAYYCSRLHLSPLF 60

Query: 61  PDGKPHSVAYDVELVDDDTWAVSCGLARAWEGREKGWSGFENRYFLEDEAHDPVDYC--- 120
           PD KP S  Y++ELVD D W +S GLA+AW+G +    G  +   L +E    VD C   
Sbjct: 61  PDSKPSSNGYEIELVDHDAWRLSSGLAQAWQGMDGAAMGTSS---LSEEV---VDNCSQP 120

Query: 121 ---DSDFDDIDNMRIRGNLFYKLDRSSKEFEEYSLDFHRKKKSVKEKEDMQKSRSKVNDK 180
              D DFD+IDNMRIRGNLFYKLDR SKEFEEYS DFHR KKS+K+K+D    + K N+ 
Sbjct: 121 GQEDPDFDEIDNMRIRGNLFYKLDRGSKEFEEYSFDFHRYKKSLKKKDD---PKEKKNES 180

Query: 181 LDNCLASGHVKLPEHVKNKYVIVERENDDVE------KKLRTPTFNQLTAPYHEPFCLDI 240
               +AS   KLP+ V NK   +    D++E      KKLR PTFNQLT PYHEPFCLDI
Sbjct: 181 PRQNVASVSDKLPK-VLNKKSGLMSPTDEIESTCVGKKKLRAPTFNQLTGPYHEPFCLDI 240

Query: 241 YISKASVRACVIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIH 300
           YISKASVRAC++HR TSKVVAVAHSISKDMKFDL S +DS ACAAVG VLAQRALADDIH
Sbjct: 241 YISKASVRACIVHRATSKVVAVAHSISKDMKFDLASTRDSVACAAVGTVLAQRALADDIH 300

Query: 301 NLVYTPRKGERIEGKLQIVLQSVTDNGIHVKIKM 320
           +++YTPRKGER+EGKL  VLQS+ DNGI+VK+K+
Sbjct: 301 DVIYTPRKGERLEGKLHFVLQSIMDNGINVKVKI 323

The following BLAST results are available for this feature:

BLAST of Lsi05G016030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PFD2_ARATH	2.5e-43	68.46	Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1	[more]
PFD2_HUMAN	1.1e-22	43.75	Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1	[more]
PFD2_BOVIN	1.1e-22	43.75	Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1	[more]
PFD2_DICDI	3.2e-22	46.43	Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1	[more]
PFD2_RAT	3.2e-22	43.06	Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1	[more]

BLAST of Lsi05G016030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSG6_CUCSA	1.3e-160	89.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638320 PE=4 SV=1	[more]
W9QM55_9ROSA	5.0e-91	57.89	Uncharacterized protein OS=Morus notabilis GN=L484_004462 PE=4 SV=1	[more]
M5XP25_PRUPE	2.3e-88	56.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022034mg PE=4 SV=1	[more]
V4RZ77_9ROSI	2.9e-83	53.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005268mg PE=4 SV=1	[more]
A0A067G7J1_CITSI	2.9e-83	53.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018389mg PE=4 SV=1	[more]

BLAST of Lsi05G016030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22450.1	1.2e-67	54.76	Ribosomal L18p/L5e family protein	[more]
AT3G22480.2	1.4e-44	68.46	prefoldin 2	[more]
AT1G08845.2	3.0e-23	48.33	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	9.1e-20	33.55	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	5.2e-07	29.90	Ribosomal L18p/L5e family protein	[more]

BLAST of Lsi05G016030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118877\|ref\|XP_008459355.1\|	6.5e-161	86.32	PREDICTED: uncharacterized protein LOC103498514 [Cucumis melo]	[more]
gi\|778707360\|ref\|XP_011656005.1\|	1.9e-160	89.03	PREDICTED: uncharacterized protein LOC101213193 [Cucumis sativus]	[more]
gi\|703078547\|ref\|XP_010090920.1\|	7.1e-91	57.89	hypothetical protein L484_004462 [Morus notabilis]	[more]
gi\|596293289\|ref\|XP_007226643.1\|	3.3e-88	56.61	hypothetical protein PRUPE_ppa022034mg [Prunus persica]	[more]
gi\|1009141421\|ref\|XP_015888185.1\|	1.8e-86	57.19	PREDICTED: uncharacterized protein LOC107423173 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0016272	prefoldin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0051082	unfolded protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009053	Prefoldin
IPR005484	Ribosomal_L18
IPR002777	PFD_beta-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0016272	prefoldin complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G016030.1	Lsi05G016030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 334..436 score: 1.0
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 223..314 score: 5.
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 336..432 score: 3.9
IPR009053	Prefoldin	unknown	SSF46579	Prefoldin	coord: 337..435 score: 7.85
None	No IPR available	unknown	Coil	Coil	coord: 397..438 score: -coord: 340..360 scor
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 219..314 score: 3.3
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 84..332 score: 1.4E
None	No IPR available	PANTHER	PTHR12899:SF9	EXPRESSED PROTEIN	coord: 84..332 score: 1.4E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 204..313 score: 7.59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G016030	CmaCh14G017060	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G016030	CmaCh06G014120	Cucurbita maxima (Rimu)	cmalsiB764
Lsi05G016030	CmoCh14G017490	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G016030	CmoCh06G014140	Cucurbita moschata (Rifu)	cmolsiB757
Lsi05G016030	Cla021627	Watermelon (97103) v1	lsiwmB365
Lsi05G016030	ClCG05G005160	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G016030	Cla97C05G086360	Watermelon (97103) v2	lsiwmbB333
Lsi05G016030	Bhi01G000586	Wax gourd	lsiwgoB446
Lsi05G016030	Cp4.1LG08g04180	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G016030	Cp4.1LG03g10740	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G016030	Carg17417	Silver-seed gourd	carlsiB551
Lsi05G016030	Carg23522	Silver-seed gourd	carlsiB772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G016030	Cucumber (Gy14) v1	cgylsiB415
Lsi05G016030	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G016030	Cucumber (Chinese Long) v2	culsiB209
Lsi05G016030	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G016030	Watermelon (Charleston Gray)	lsiwcgB313
Lsi05G016030	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G016030	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G016030	Cucumber (Chinese Long) v3	cuclsiB228
Lsi05G016030	Watermelon (97103) v2	lsiwmbB350