Lsi05G015330 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G015330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	chr05 : 23118447 .. 23119010 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

mRNA sequence

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Coding sequence (CDS)

ATGAGGCCCTTAGACGAGCAGGAGACCACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGAAACAACCTCAAGAACATCGTTGAGAATCCCTCTCACGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAAGTCTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTTGCTCGCTCCAACCTCGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTCTGTATGGAAACCATGTTTTAAAAGGTGGGTTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTCCCTTTGGGATTTGGAGTTGCGGCGAAGTCCACGCAGGATTGCAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCACCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Protein sequence

MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

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BLAST of Lsi05G015330 vs. Swiss-Prot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-62
Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lsi05G015330 vs. Swiss-Prot
Match: NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.2e-62
Identity = 115/187 (61.50%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+ GTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Lsi05G015330 vs. Swiss-Prot
Match: NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-61
Identity = 112/187 (59.89%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + +L  L+P AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFGVAAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Lsi05G015330 vs. Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.0e-61
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Lsi05G015330 vs. Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-60
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]

BLAST of Lsi05G015330 vs. TrEMBL
Match: A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 3.9e-103
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. TrEMBL
Match: V4S7H0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CICLE_v10005994mg PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.6e-93
Identity = 164/187 (87.70%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ +L L++ NA+HKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. TrEMBL
Match: A0A067G876_CITSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN_1g029802mg PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 8.1e-93
Identity = 163/187 (87.17%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ +L L++ NA+HKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFGVAAKS QDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. TrEMBL
Match: M5WSP1_PRUPE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_ppa012007mg PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-92
Identity = 163/187 (87.17%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +P+ GRYCFRLHKNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKLFKFTGNNLKNIVENPSHEGPDPDSGRYCFRLHKNKVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR+ LV+LGTCIG+FTHGGSFHLTV  L L++ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTQLVSLGTCIGRFTHGGSFHLTVQCLSLVASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQTDIGEY 180

Query: 181 LRMEDEL 188
           LRMED+L
Sbjct: 181 LRMEDDL 187

[Close]

BLAST of Lsi05G015330 vs. TrEMBL
Match: A5BNR0_VITVI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera GN=VIT_05s0094g01280 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 5.8e-91
Identity = 161/187 (86.10%), Postives = 173/187 (92.51%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KN+VYYVS+SLV
Sbjct: 1   MRPLDENETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLQKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+ R+ LV+LGTCIGKFT GG FHLTV S+ LL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIGRAQLVSLGTCIGKFTKGGKFHLTVQSVNLLAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI  GDG+VV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVAGDGIVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. TAIR10
Match: AT4G15770.1 (AT4G15770.1 RNA binding)

HSP 1 Score: 325.1 bits (832), Expect = 2.8e-89
Identity = 153/187 (81.82%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENPS EG E  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ SL +L+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: gi|449432838|ref|XP_004134205.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 5.6e-103
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: gi|659076807|ref|XP_008438877.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 4.7e-102
Identity = 182/187 (97.33%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: gi|470121178|ref|XP_004296658.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 353.2 bits (905), Expect = 2.8e-94
Identity = 167/187 (89.30%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL+KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLV+LGTCIGKFTHGGSFHLTV  L LL+ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARLNLVSLGTCIGKFTHGGSFHLTVQCLSLLASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVV+SMSD+PLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: gi|470135632|ref|XP_004303616.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 351.7 bits (901), Expect = 8.1e-94
Identity = 166/187 (88.77%), Postives = 176/187 (94.12%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL+KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLV+LGTCIGKFTHGGSFHLTV  L  L+ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARVNLVSLGTCIGKFTHGGSFHLTVQCLSFLASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVV+SMSD+PLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Lsi05G015330 vs. NCBI nr
Match: gi|567852875|ref|XP_006419601.1| (hypothetical protein CICLE_v10005994mg [Citrus clementina])

HSP 1 Score: 350.1 bits (897), Expect = 2.3e-93
Identity = 164/187 (87.70%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ +L L++ NA+HKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:

BLAST of Lsi05G015330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIP7_XENTR	3.6e-62	61.50	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=ni...	[more]
NIP7_XENLA	6.2e-62	61.50	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 P...	[more]
NIP7_TETNG	4.0e-61	59.89	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis G...	[more]
NIP7_RAT	9.0e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip...	[more]
NIP7_HUMAN	1.5e-60	60.43	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=...	[more]

BLAST of Lsi05G015330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L578_CUCSA	3.9e-103	97.86	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3...	[more]
V4S7H0_9ROSI	1.6e-93	87.70	60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CIC...	[more]
A0A067G876_CITSI	8.1e-93	87.17	60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN...	[more]
M5WSP1_PRUPE	2.4e-92	87.17	60S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_...	[more]
A5BNR0_VITVI	5.8e-91	86.10	60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera GN=VIT_05...	[more]

BLAST of Lsi05G015330 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15770.1	2.8e-89	81.82	RNA binding	[more]

BLAST of Lsi05G015330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432838\|ref\|XP_004134205.1\|	5.6e-103	97.86	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus...	[more]
gi\|659076807\|ref\|XP_008438877.1\|	4.7e-102	97.33	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]	[more]
gi\|470121178\|ref\|XP_004296658.1\|	2.8e-94	89.30	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca ...	[more]
gi\|470135632\|ref\|XP_004303616.1\|	8.1e-94	88.77	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca ...	[more]
gi\|567852875\|ref\|XP_006419601.1\|	2.3e-93	87.70	hypothetical protein CICLE_v10005994mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042255	ribosome assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016686	Ribosomal_synth_fac_NIP7
IPR015947	PUA-like_sf
IPR005155	Rbsml_synth_fac_NIP7-like
IPR002478	PUA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G015330.1	Lsi05G015330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 score: 4.1
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 102..178 score: 14
IPR005155	Ribosome biogenesis factor NIP7-like	PFAM	PF03657	UPF0113	coord: 48..182 score: 4.
IPR015947	PUA-like domain	GENE3D	G3DSA:2.30.130.10		coord: 102..187 score: 1.6
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 103..178 score: 5.52
IPR016686	Ribosome biogenesis factor, NIP7	PIR	PIRSF017190	NIP7	coord: 1..187 score: 3.8
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187 score: 3.9
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187 score: 3.9
None	No IPR available	unknown	SSF88802	Pre-PUA domain	coord: 1..101 score: 9.15

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G015330	Csa3G153740	Cucumber (Chinese Long) v2	culsiB199
Lsi05G015330	CSPI03G14340	Wild cucumber (PI 183967)	cpilsiB198
Lsi05G015330	Cucsa.253160	Cucumber (Gy14) v1	cgylsiB420
Lsi05G015330	CmaCh06G014930	Cucurbita maxima (Rimu)	cmalsiB757
Lsi05G015330	CmaCh14G016250	Cucurbita maxima (Rimu)	cmalsiB250
Lsi05G015330	CmoCh06G014890	Cucurbita moschata (Rifu)	cmolsiB752
Lsi05G015330	CmoCh14G016630	Cucurbita moschata (Rifu)	cmolsiB238
Lsi05G015330	Cla021732	Watermelon (97103) v1	lsiwmB362
Lsi05G015330	MELO3C006657	Melon (DHL92) v3.5.1	lsimeB369
Lsi05G015330	MELO3C006657.2	Melon (DHL92) v3.6.1	lsimedB385
Lsi05G015330	Cla97C05G087510	Watermelon (97103) v2	lsiwmbB330
Lsi05G015330	Bhi01G000708	Wax gourd	lsiwgoB432
Lsi05G015330	Cp4.1LG08g04720	Cucurbita pepo (Zucchini)	cpelsiB718
Lsi05G015330	Cp4.1LG03g11430	Cucurbita pepo (Zucchini)	cpelsiB512
Lsi05G015330	CsGy3G014490	Cucumber (Gy14) v2	cgyblsiB184
Lsi05G015330	Carg17349	Silver-seed gourd	carlsiB552
Lsi05G015330	Carg20115	Silver-seed gourd	carlsiB761
Lsi05G015330	CsaV3_3G014560	Cucumber (Chinese Long) v3	cuclsiB218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G015330	Watermelon (97103) v2	lsiwmbB344
Lsi05G015330	Wax gourd	lsiwgoB423
Lsi05G015330	Bottle gourd (USVL1VR-Ls)	lsilsiB006
Lsi05G015330	Bottle gourd (USVL1VR-Ls)	lsilsiB161
Lsi05G015330	Cucumber (Gy14) v1	cgylsiB287
Lsi05G015330	Cucurbita maxima (Rimu)	cmalsiB353
Lsi05G015330	Cucurbita maxima (Rimu)	cmalsiB834
Lsi05G015330	Cucurbita moschata (Rifu)	cmolsiB342
Lsi05G015330	Cucurbita moschata (Rifu)	cmolsiB819
Lsi05G015330	Cucurbita pepo (Zucchini)	cpelsiB118
Lsi05G015330	Cucurbita pepo (Zucchini)	cpelsiB268
Lsi05G015330	Wild cucumber (PI 183967)	cpilsiB058
Lsi05G015330	Wild cucumber (PI 183967)	cpilsiB474
Lsi05G015330	Cucumber (Chinese Long) v2	culsiB057
Lsi05G015330	Cucumber (Chinese Long) v2	culsiB466
Lsi05G015330	Melon (DHL92) v3.5.1	lsimeB342
Lsi05G015330	Watermelon (Charleston Gray)	lsiwcgB333
Lsi05G015330	Watermelon (Charleston Gray)	lsiwcgB345
Lsi05G015330	Watermelon (97103) v1	lsiwmB384
Lsi05G015330	Cucumber (Gy14) v2	cgyblsiB054
Lsi05G015330	Cucumber (Gy14) v2	cgyblsiB433
Lsi05G015330	Melon (DHL92) v3.6.1	lsimedB359
Lsi05G015330	Melon (DHL92) v3.6.1	lsimedB364
Lsi05G015330	Silver-seed gourd	carlsiB065
Lsi05G015330	Silver-seed gourd	carlsiB642
Lsi05G015330	Cucumber (Chinese Long) v3	cuclsiB067
Lsi05G015330	Cucumber (Chinese Long) v3	cuclsiB494