MELO3C006657.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C006657.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosome subunit biogenesis protein NIP7 homolog
Locationchr06 : 4850234 .. 4851158 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGATATTTTACATATAAAGTCATAAACCCTAAAACCTACAAAATTCTCCGCGCCACCGCTCACTCCTCCTTCTCCGATCGACGACGATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAAAGGATCAAGGATGAAGCTGAATTGAGTTTATTGGGAATCGGCTTCCCGTTCCAGGTATACTCCAGTTGTTCTTGTAAAGTTTGTTGATCAATAGGATTTTGAGCTCAAATTGATATTCTATTTTAGGCATCAAGTCAATTTTGTATCTTTTGAACACCATGGTGTGAGATTTGTCTCTTTAATTGAGTGTTTAAGTTATGTGAACGATGAAACTATTGCTCTAATCCGAGCTATCTAATATCATAGAGATAAAGATTTTGCTTATTCTTTGCT

mRNA sequence

AAAGATATTTTACATATAAAGTCATAAACCCTAAAACCTACAAAATTCTCCGCGCCACCGCTCACTCCTCCTTCTCCGATCGACGACGATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAAAGGATCAAGGATGAAGCTGAATTGAGTTTATTGGGAATCGGCTTCCCGTTCCAGGTATACTCCAGTTGTTCTTGTAAAGTTTGTTGATCAATAGGATTTTGAGCTCAAATTGATATTCTATTTTAGGCATCAAGTCAATTTTGTATCTTTTGAACACCATGGTGTGAGATTTGTCTCTTTAATTGAGTGTTTAAGTTATGTGAACGATGAAACTATTGCTCTAATCCGAGCTATCTAATATCATAGAGATAAAGATTTTGCTTATTCTTTGCT

Coding sequence (CDS)

ATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Protein sequence

MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLVKRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL
Homology
[Close]
BLAST of MELO3C006657.2 vs. NCBI nr
Match: XP_008438877.1 (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 386.3 bits (991), Expect = 5.7e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. NCBI nr
Match: XP_004134205.1 (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] >KGN57100.1 hypothetical protein Csa_3G153740 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 2.2e-103
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. NCBI nr
Match: XP_022137772.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia])

HSP 1 Score: 369.8 bits (948), Expect = 5.6e-99
Identity = 177/187 (94.65%), Postives = 181/187 (96.79%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNL+NIVENPSHEG EPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLV+LGTCIGK THGGSFHLTVQSLGLL+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 1.2e-98
Identity = 178/187 (95.19%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG  PNPGRYCFRL KNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

[Close]
BLAST of MELO3C006657.2 vs. NCBI nr
Match: XP_022979935.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979936.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979937.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979939.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979940.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979941.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 6.1e-98
Identity = 178/187 (95.19%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTV SLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. TAIR10
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 331.3 bits (848), Expect = 4.0e-91
Identity = 157/187 (83.96%), Postives = 171/187 (91.44%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENPS EG E  PG YCFRLQKN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLVS GTCIGK+TH GSFHLT+ SL +L+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IVPGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match: sp|A4QND5|NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 114/187 (60.96%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match: sp|Q6DFH9|NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.3e-61
Identity = 114/187 (60.96%), Postives = 138/187 (73.80%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVS GTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match: sp|Q4T2X8|NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-60
Identity = 110/187 (58.82%), Postives = 138/187 (73.80%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVS+GTC GKFT    F L + +L  L+P AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match: sp|Q9WV50|NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-60
Identity = 113/187 (60.43%), Postives = 138/187 (73.80%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match: sp|Q9Y221|NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-59
Identity = 112/187 (59.89%), Postives = 138/187 (73.80%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]
BLAST of MELO3C006657.2 vs. TrEMBL
Match: tr|A0A1S3AXI3|A0A1S3AXI3_CUCME (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.8e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. TrEMBL
Match: tr|A0A0A0L578|A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.4e-103
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. TrEMBL
Match: tr|A0A2P6PD60|A0A2P6PD60_ROSCH (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0221961 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 5.5e-95
Identity = 169/187 (90.37%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLVSLGTCIGKFTHGGSFHLTVQ L L++ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARVNLVSLGTCIGKFTHGGSFHLTVQCLSLVASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI+PGDGVVV+SMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIMPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. TrEMBL
Match: tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 GN=LOC108995067 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.2e-94
Identity = 171/187 (91.44%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKL KFTGNNLK+IVENPSHEG E NPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTSVFEKLFKFTGNNLKSIVENPSHEGPESNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+ LVSLGTCIGKFTHGGSFHLTVQSL +L+PNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARTQLVSLGTCIGKFTHGGSFHLTVQSLSILAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI  GDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIATGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657.2 vs. TrEMBL
Match: tr|A0A2P6SBR1|A0A2P6SBR1_ROSCH (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0332291 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.6e-94
Identity = 168/187 (89.84%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIV+NPSHEG +PNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVKNPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLVSLGTCIGKFTHGGSFHLTVQ L L++ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARVNLVSLGTCIGKFTHGGSFHLTVQCLSLVASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI+PGDGVVV+SMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIMPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:
BLAST of MELO3C006657.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438877.15.7e-104100.00PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo][more]
XP_004134205.12.2e-10399.47PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus... [more]
XP_022137772.15.6e-9994.6560S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia][more]
XP_023528444.11.2e-9895.1960S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo... [more]
XP_022979935.16.1e-9895.1960S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_0229... [more]
BLAST of MELO3C006657.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15770.14.0e-9183.96RNA binding[more]
BLAST of MELO3C006657.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4QND5|NIP7_XENTR3.1e-6160.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83... [more]
sp|Q6DFH9|NIP7_XENLA5.3e-6160.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G... [more]
sp|Q4T2X8|NIP7_TETNG4.5e-6058.8260S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O... [more]
sp|Q9WV50|NIP7_RAT7.7e-6060.4360S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101... [more]
sp|Q9Y221|NIP7_HUMAN1.3e-5959.8960S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=... [more]
BLAST of MELO3C006657.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AXI3|A0A1S3AXI3_CUCME3.8e-104100.0060S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0L578|A0A0A0L578_CUCSA1.4e-10399.4760S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ... [more]
tr|A0A2P6PD60|A0A2P6PD60_ROSCH5.5e-9590.3760S ribosome subunit biogenesis protein NIP7 homolog OS=Rosa chinensis OX=74649 ... [more]
tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI1.2e-9491.4460S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 G... [more]
tr|A0A2P6SBR1|A0A2P6SBR1_ROSCH1.6e-9489.8460S ribosome subunit biogenesis protein NIP7 homolog OS=Rosa chinensis OX=74649 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_sf
IPR036974PUA_sf
IPR016686Ribosomal_synth_fac_NIP7
IPR005155Rbsml_synth_fac_NIP7-like
IPR002478PUA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006657.2.1MELO3C006657.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 103..178
e-value: 1.7E-16
score: 70.8
IPR002478PUA domainPROSITEPS50890PUAcoord: 102..178
score: 14.066
IPR005155Ribosome biogenesis factor NIP7-likePFAMPF03657UPF0113coord: 48..182
e-value: 2.4E-9
score: 37.3
NoneNo IPR availableGENE3DG3DSA:3.10.450.220coord: 1..101
e-value: 1.2E-36
score: 126.5
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..187
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..187
NoneNo IPR availableSUPERFAMILYSSF88802Pre-PUA domaincoord: 1..101
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..187
e-value: 4.0E-79
score: 262.2
IPR036974PUA domain superfamilyGENE3DG3DSA:2.30.130.10coord: 102..187
e-value: 6.5E-43
score: 146.6
IPR015947PUA-like superfamilySUPERFAMILYSSF88697PUA domain-likecoord: 103..178

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006657.2Csa3G153740Cucumber (Chinese Long) v2cumedB223
MELO3C006657.2CSPI03G14340Wild cucumber (PI 183967)cpimedB224
MELO3C006657.2Cucsa.253160Cucumber (Gy14) v1cgymedB432
MELO3C006657.2CmaCh14G016250Cucurbita maxima (Rimu)cmamedB273
MELO3C006657.2CmaCh06G014930Cucurbita maxima (Rimu)cmamedB863
MELO3C006657.2CmoCh06G014890Cucurbita moschata (Rifu)cmomedB857
MELO3C006657.2CmoCh14G016630Cucurbita moschata (Rifu)cmomedB260
MELO3C006657.2Lsi05G015330Bottle gourd (USVL1VR-Ls)lsimedB385
MELO3C006657.2Cp4.1LG08g04720Cucurbita pepo (Zucchini)cpemedB951
MELO3C006657.2Cp4.1LG03g11430Cucurbita pepo (Zucchini)cpemedB693
MELO3C006657.2CsGy3G014490Cucumber (Gy14) v2cgybmedB201
MELO3C006657.2Cla021732Watermelon (97103) v1medwmB447
MELO3C006657.2Cla97C05G087510Watermelon (97103) v2medwmbB423
MELO3C006657.2Bhi01G000708Wax gourdmedwgoB530
MELO3C006657.2Carg17349Silver-seed gourdcarmedB0616
MELO3C006657.2Carg20115Silver-seed gourdcarmedB0840
MELO3C006657.2CsaV3_3G014560Cucumber (Chinese Long) v3cucmedB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006657.2Watermelon (97103) v2medwmbB442
MELO3C006657.2Wax gourdmedwgoB523
MELO3C006657.2Cucumber (Gy14) v2cgybmedB436
MELO3C006657.2Cucumber (Gy14) v1cgymedB299
MELO3C006657.2Cucurbita maxima (Rimu)cmamedB398
MELO3C006657.2Cucurbita maxima (Rimu)cmamedB400
MELO3C006657.2Cucurbita maxima (Rimu)cmamedB950
MELO3C006657.2Cucurbita moschata (Rifu)cmomedB385
MELO3C006657.2Cucurbita moschata (Rifu)cmomedB388
MELO3C006657.2Cucurbita moschata (Rifu)cmomedB940
MELO3C006657.2Cucurbita pepo (Zucchini)cpemedB170
MELO3C006657.2Cucurbita pepo (Zucchini)cpemedB368
MELO3C006657.2Wild cucumber (PI 183967)cpimedB489
MELO3C006657.2Cucumber (Chinese Long) v2cumedB479
MELO3C006657.2Melon (DHL92) v3.6.1medmedB049
MELO3C006657.2Melon (DHL92) v3.6.1medmedB112
MELO3C006657.2Bottle gourd (USVL1VR-Ls)lsimedB032
MELO3C006657.2Watermelon (Charleston Gray)medwcgB416
MELO3C006657.2Watermelon (Charleston Gray)medwcgB437
MELO3C006657.2Watermelon (97103) v1medwmB474
MELO3C006657.2Silver-seed gourdcarmedB0075
MELO3C006657.2Silver-seed gourdcarmedB0714
MELO3C006657.2Cucumber (Chinese Long) v3cucmedB079
MELO3C006657.2Cucumber (Chinese Long) v3cucmedB498