Carg17349 (gene) Silver-seed gourd

Overview
NameCarg17349
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosome subunit biogenesis protein NIP7 homolog
LocationCucurbita_argyrosperma_scaffold_092 : 142845 .. 143408 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

mRNA sequence

ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Coding sequence (CDS)

ATGAGGCCCCTAGACGAGAAAGAGACCACTGCCGTGTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGCGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Protein sequence

MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLVKRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL
Homology
[Close]
BLAST of Carg17349 vs. NCBI nr
Match: XP_022948024.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_023539905.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 2.0e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. NCBI nr
Match: XP_022973782.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 386.3 bits (991), Expect = 5.7e-104
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVARNNLVALGTCIGKFTHGGSFHLTVH+LGLLSANARHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. NCBI nr
Match: XP_022979935.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979936.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979937.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979939.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979940.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979941.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 3.5e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV LGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.3 bits (965), Expect = 5.9e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGP  NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

[Close]
BLAST of Carg17349 vs. NCBI nr
Match: XP_022956278.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956279.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956280.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956281.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956282.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956283.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956284.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata])

HSP 1 Score: 375.9 bits (964), Expect = 7.8e-101
Identity = 179/187 (95.72%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLL++NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. TAIR10
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 325.9 bits (834), Expect = 1.7e-89
Identity = 152/187 (81.28%), Postives = 170/187 (90.91%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KF GNNLK IVENP+ EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ +L +L+ANA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]
BLAST of Carg17349 vs. Swiss-Prot
Match: sp|A4QND5|NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-61
Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of Carg17349 vs. Swiss-Prot
Match: sp|Q6DFH9|NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+ GTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of Carg17349 vs. Swiss-Prot
Match: sp|Q4T2X8|NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-60
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + AL  L+  A+ KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]
BLAST of Carg17349 vs. Swiss-Prot
Match: sp|Q9WV50|NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-59
Identity = 111/187 (59.36%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]
BLAST of Carg17349 vs. Swiss-Prot
Match: sp|Q9Y221|NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.5e-59
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]
BLAST of Carg17349 vs. TrEMBL
Match: tr|A0A0A0L578|A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.1e-98
Identity = 175/187 (93.58%), Postives = 181/187 (96.79%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENP+HEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV+LGTCIGKFTHGGSFHLTV +LGLLS NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. TrEMBL
Match: tr|A0A1S3AXI3|A0A1S3AXI3_CUCME (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 3.4e-97
Identity = 174/187 (93.05%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENP+HEG E NPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV+LGTCIGKFTHGGSFHLTV +LGLLS NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. TrEMBL
Match: tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 GN=LOC108995067 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 9.4e-95
Identity = 169/187 (90.37%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT+VFEKL KFTGNNLK+IVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTSVFEKLFKFTGNNLKSIVENPSHEGPESNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR  LV+LGTCIGKFTHGGSFHLTV +L +L+ NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARTQLVSLGTCIGKFTHGGSFHLTVQSLSILAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIA GDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIATGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. TrEMBL
Match: tr|A0A2P5DZX2|A0A2P5DZX2_PARAD (60S ribosome subunit biogenesis protein NIP7 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_017090 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.6e-94
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEK+ KFTGNNLKNIVENP+HEGP+  PGRYCFRL+KNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKIFKFTGNNLKNIVENPSHEGPDSEPGRYCFRLNKNKVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLV+LGTCIGKFTHGGSFHLTV  L LLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTNLVSLGTCIGKFTHGGSFHLTVQCLSLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVV+SMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVFSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg17349 vs. TrEMBL
Match: tr|V4S7H0|V4S7H0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina OX=85681 GN=CICLE_v10005994mg PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.1e-94
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ AL L++ANARHKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:
BLAST of Carg17349 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948024.12.0e-104100.0060S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02... [more]
XP_022973782.15.7e-10498.9360S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima][more]
XP_022979935.13.5e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_0229... [more]
XP_023528444.15.9e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo... [more]
XP_022956278.17.8e-10195.7260S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02... [more]
BLAST of Carg17349 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15770.11.7e-8981.28RNA binding[more]
BLAST of Carg17349 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4QND5|NIP7_XENTR1.8e-6160.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83... [more]
sp|Q6DFH9|NIP7_XENLA3.1e-6160.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G... [more]
sp|Q4T2X8|NIP7_TETNG7.7e-6058.8260S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O... [more]
sp|Q9WV50|NIP7_RAT3.8e-5959.3660S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101... [more]
sp|Q9Y221|NIP7_HUMAN6.5e-5958.8260S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=... [more]
BLAST of Carg17349 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L578|A0A0A0L578_CUCSA4.1e-9893.5860S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ... [more]
tr|A0A1S3AXI3|A0A1S3AXI3_CUCME3.4e-9793.0560S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI9.4e-9590.3760S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 G... [more]
tr|A0A2P5DZX2|A0A2P5DZX2_PARAD1.6e-9489.3060S ribosome subunit biogenesis protein NIP7 homolog OS=Parasponia andersonii OX... [more]
tr|V4S7H0|V4S7H0_9ROSI2.1e-9488.7760S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina OX=856... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_sf
IPR036974PUA_sf
IPR016686Ribosomal_synth_fac_NIP7
IPR005155Rbsml_synth_fac_NIP7-like
IPR002478PUA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17349-RACarg17349-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 103..178
e-value: 3.1E-17
score: 73.3
IPR002478PUA domainPROSITEPS50890PUAcoord: 102..178
score: 14.487
IPR005155Ribosome biogenesis factor NIP7-likePFAMPF03657UPF0113coord: 48..182
e-value: 6.0E-9
score: 36.0
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..187
e-value: 2.8E-79
score: 262.7
IPR036974PUA domain superfamilyGENE3DG3DSA:2.30.130.10coord: 102..187
e-value: 3.9E-43
score: 147.3
NoneNo IPR availableGENE3DG3DSA:3.10.450.220coord: 1..101
e-value: 2.1E-36
score: 125.8
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..187
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..187
NoneNo IPR availableSUPERFAMILYSSF88802Pre-PUA domaincoord: 1..101
IPR015947PUA-like superfamilySUPERFAMILYSSF88697PUA domain-likecoord: 103..178

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17349Cla021732Watermelon (97103) v1carwmB0603
Carg17349Csa3G153740Cucumber (Chinese Long) v2carcuB0633
Carg17349MELO3C006657Melon (DHL92) v3.5.1carmeB0610
Carg17349CSPI03G14340Wild cucumber (PI 183967)carcpiB0639
Carg17349Cucsa.253160Cucumber (Gy14) v1carcgyB0681
Carg17349CmaCh06G014930Cucurbita maxima (Rimu)carcmaB0849
Carg17349CmaCh14G016250Cucurbita maxima (Rimu)carcmaB0847
Carg17349CmoCh14G016630Cucurbita moschata (Rifu)carcmoB0823
Carg17349CmoCh06G014890Cucurbita moschata (Rifu)carcmoB0825
Carg17349Lsi05G015330Bottle gourd (USVL1VR-Ls)carlsiB552
Carg17349Cp4.1LG08g04720Cucurbita pepo (Zucchini)carcpeB0861
Carg17349Cp4.1LG03g11430Cucurbita pepo (Zucchini)carcpeB0860
Carg17349CsGy3G014490Cucumber (Gy14) v2carcgybB0605
Carg17349MELO3C006657.2Melon (DHL92) v3.6.1carmedB0616
Carg17349CsaV3_3G014560Cucumber (Chinese Long) v3carcucB0640
Carg17349Cla97C05G087510Watermelon (97103) v2carwmbB0631
Carg17349Bhi01G000708Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17349Carg20115Silver-seed gourdcarcarB544
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17349Silver-seed gourdcarcarB083
Carg17349Silver-seed gourdcarcarB543
Carg17349Cucurbita maxima (Rimu)carcmaB0848
Carg17349Cucurbita maxima (Rimu)carcmaB0850
Carg17349Cucurbita moschata (Rifu)carcmoB0824
Carg17349Cucurbita moschata (Rifu)carcmoB0826
Carg17349Cucurbita pepo (Zucchini)carcpeB0857
Carg17349Cucurbita pepo (Zucchini)carcpeB0859
Carg17349Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17349Melon (DHL92) v3.5.1carmeB0609
Carg17349Melon (DHL92) v3.6.1carmedB0615
Carg17349Watermelon (Charleston Gray)carwcgB0588
Carg17349Watermelon (Charleston Gray)carwcgB0589
Carg17349Watermelon (97103) v1carwmB0604
Carg17349Watermelon (97103) v2carwmbB0632
Carg17349Wax gourdcarwgoB0720