MELO3C006657 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006657
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description60S ribosome subunit biogenesis protein NIP7 homolog
Locationchr6 : 4850706 .. 4851630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGATATTTTACATATAAAGTCATAAACCCTAAAACCTACAAAATTCTCCGCGCCACCGCTCACTCCTCCTTCTCCGATCGACGACGATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAAAGGATCAAGGATGAAGCTGAATTGAGTTTATTGGGAATCGGCTTCCCGTTCCAGGTATACTCCAGTTGTTCTTGTAAAGTTTGTTGATCAATAGGATTTTGAGCTCAAATTGATATTCTATTTTAGGCATCAAGTCAATTTTGTATCTTTTGAACACCATGGTGTGAGATTTGTCTCTTTAATTGAGTGTTTAAGTTATGTGAACGATGAAACTATTGCTCTAATCCGAGCTATCTAATATCATAGAGATAAAGATTTTGCTTATTCTTTGCT

mRNA sequence

AAAGATATTTTACATATAAAGTCATAAACCCTAAAACCTACAAAATTCTCCGCGCCACCGCTCACTCCTCCTTCTCCGATCGACGACGATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAAAGGATCAAGGATGAAGCTGAATTGAGTTTATTGGGAATCGGCTTCCCGTTCCAGGTATACTCCAGTTGTTCTTGTAAAGTTTGTTGATCAATAGGATTTTGAGCTCAAATTGATATTCTATTTTAGGCATCAAGTCAATTTTGTATCTTTTGAACACCATGGTGTGAGATTTGTCTCTTTAATTGAGTGTTTAAGTTATGTGAACGATGAAACTATTGCTCTAATCCGAGCTATCTAATATCATAGAGATAAAGATTTTGCTTATTCTTTGCT

Coding sequence (CDS)

ATGAGGCCTTTAGACGAGCAAGAGACTACCGTCGTGTTCGAAAAGCTTCACAAATTCACAGGTAACAACCTCAAGAACATCGTCGAGAATCCCTCTCATGAAGGCACCGAACCAAATCCCGGCCGCTACTGCTTCCGCCTCCAGAAGAACAAGGTTTATTACGTCAGTGACTCCCTCGTCAAGCGAGCCACCAACGTAGCCCGCTCCAACCTCGTCTCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCAGTCGTTGGGGCTATTGTCCCCCAATGCCAAGCACAAGGTTTGGCTTAAACCAACCTCTGAGATGTCCTTTCTGTATGGAAACCATGTTTTAAAGGGCGGCTTAGGACGGATTACTGAAAATATTGTTCCCGGTGATGGGGTCGTCGTGTATTCTATGTCGGATGTGCCTTTGGGATTTGGAATTGCGGCAAAGTCCACGCAGGATTGTAGGAAATTGGACCCAAATGGGATTGTGGTTCTACACCAATCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTAA

Protein sequence

MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLVKRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL*
Homology
[Close]
BLAST of MELO3C006657 vs. Swiss-Prot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-60
Identity = 114/187 (60.96%), Postives = 137/187 (73.26%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of MELO3C006657 vs. Swiss-Prot
Match: NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-60
Identity = 114/187 (60.96%), Postives = 136/187 (72.73%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVS GTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of MELO3C006657 vs. Swiss-Prot
Match: NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 110/187 (58.82%), Postives = 136/187 (72.73%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRL  ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LVS+GTC GKFT    F L + +L  L+P AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]
BLAST of MELO3C006657 vs. Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-59
Identity = 113/187 (60.43%), Postives = 136/187 (72.73%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]
BLAST of MELO3C006657 vs. Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.5e-59
Identity = 112/187 (59.89%), Postives = 136/187 (72.73%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRL  ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LVSLGTC GKFT    F L V +L  L+P AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN     GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]
BLAST of MELO3C006657 vs. TrEMBL
Match: A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 3.9e-103
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. TrEMBL
Match: A5BNR0_VITVI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera GN=VIT_05s0094g01280 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.8e-92
Identity = 166/187 (88.77%), Postives = 176/187 (94.12%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRLQKN+VYYVS+SLV
Sbjct: 1   MRPLDENETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLQKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+ R+ LVSLGTCIGKFT GG FHLTVQS+ LL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIGRAQLVSLGTCIGKFTKGGKFHLTVQSVNLLAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIV GDG+VV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVAGDGIVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. TrEMBL
Match: M5WSP1_PRUPE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_ppa012007mg PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-92
Identity = 166/187 (88.77%), Postives = 177/187 (94.65%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +P+ GRYCFRL KNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKLFKFTGNNLKNIVENPSHEGPDPDSGRYCFRLHKNKVYYVSESLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR+ LVSLGTCIG+FTHGGSFHLTVQ L L++ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTQLVSLGTCIGRFTHGGSFHLTVQCLSLVASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQTDIGEY 180

Query: 181 LRMEDEL 188
           LRMED+L
Sbjct: 181 LRMEDDL 187

[Close]
BLAST of MELO3C006657 vs. TrEMBL
Match: V4S7H0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CICLE_v10005994mg PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-92
Identity = 163/187 (87.17%), Postives = 176/187 (94.12%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LVSLGTCIGKFTHGG FHLT+Q+L L++ NA+HKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. TrEMBL
Match: A0A067G876_CITSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN_1g029802mg PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.2e-91
Identity = 162/187 (86.63%), Postives = 175/187 (93.58%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LVSLGTCIGKFTHGG FHLT+Q+L L++ NA+HKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVVYSMSDVPLGFG+AAKS QDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. TAIR10
Match: AT4G15770.1 (AT4G15770.1 RNA binding)

HSP 1 Score: 328.9 bits (842), Expect = 2.0e-90
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENPS EG E  PG YCFRLQKN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLVS GTCIGK+TH GSFHLT+ SL +L+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IVPGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]
BLAST of MELO3C006657 vs. NCBI nr
Match: gi|659076807|ref|XP_008438877.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 1.5e-103
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. NCBI nr
Match: gi|449432838|ref|XP_004134205.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 5.6e-103
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. NCBI nr
Match: gi|470121178|ref|XP_004296658.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 355.9 bits (912), Expect = 4.3e-95
Identity = 171/187 (91.44%), Postives = 178/187 (95.19%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLVSLGTCIGKFTHGGSFHLTVQ L LL+ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARLNLVSLGTCIGKFTHGGSFHLTVQCLSLLASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVV+SMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. NCBI nr
Match: gi|470135632|ref|XP_004303616.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 170/187 (90.91%), Postives = 177/187 (94.65%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +PNPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLVSLGTCIGKFTHGGSFHLTVQ L  L+ NAKHKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARVNLVSLGTCIGKFTHGGSFHLTVQCLSFLASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVV+SMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of MELO3C006657 vs. NCBI nr
Match: gi|657953626|ref|XP_008363652.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Malus domestica])

HSP 1 Score: 349.7 bits (896), Expect = 3.1e-93
Identity = 168/187 (89.84%), Postives = 176/187 (94.12%), Query Frame = 1 

Query: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KFTGNNLKNIVENPSHEG +P PGRYCFRL KNKVYYVS+SLV
Sbjct: 1   MRPLDETETTTVFEKLFKFTGNNLKNIVENPSHEGPDPGPGRYCFRLHKNKVYYVSESLV 60

Query: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR+ LVSLGTCIG+FTHGG FHLTVQ L LL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTQLVSLGTCIGRFTHGGKFHLTVQCLSLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIVPGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQTDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:
BLAST of MELO3C006657 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NIP7_XENTR1.5e-6060.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=ni... [more]
NIP7_XENLA2.6e-6060.9660S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 P... [more]
NIP7_TETNG2.2e-5958.8260S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis G... [more]
NIP7_RAT3.8e-5960.4360S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip... [more]
NIP7_HUMAN6.5e-5959.8960S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=... [more]
BLAST of MELO3C006657 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L578_CUCSA3.9e-10399.4760S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3... [more]
A5BNR0_VITVI1.8e-9288.7760S ribosome subunit biogenesis protein NIP7 homolog OS=Vitis vinifera GN=VIT_05... [more]
M5WSP1_PRUPE2.4e-9288.7760S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_... [more]
V4S7H0_9ROSI2.4e-9287.1760S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CIC... [more]
A0A067G876_CITSI1.2e-9186.6360S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN... [more]
BLAST of MELO3C006657 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15770.12.0e-9083.96 RNA binding[more]
BLAST of MELO3C006657 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076807|ref|XP_008438877.1|1.5e-103100.00PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo][more]
gi|449432838|ref|XP_004134205.1|5.6e-10399.47PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus... [more]
gi|470121178|ref|XP_004296658.1|4.3e-9591.44PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca ... [more]
gi|470135632|ref|XP_004303616.1|1.2e-9490.91PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca ... [more]
gi|657953626|ref|XP_008363652.1|3.1e-9389.84PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Malus domestica... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR005155Rbsml_synth_fac_NIP7-like
IPR015947PUA-like_sf
IPR016686Ribosomal_synth_fac_NIP7
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005634 nucleus
cellular_component GO:0005829 cytosol
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46177melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006657T1MELO3C006657T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46177MU46177transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 103..178
score: 1.7
IPR002478PUA domainPROFILEPS50890PUAcoord: 102..178
score: 14
IPR005155Ribosome biogenesis factor NIP7-likePFAMPF03657UPF0113coord: 48..182
score: 2.
IPR015947PUA-like domainGENE3DG3DSA:2.30.130.10coord: 102..187
score: 3.4
IPR015947PUA-like domainunknownSSF88697PUA domain-likecoord: 103..178
score: 7.18
IPR016686Ribosome biogenesis factor, NIP7PIRPIRSF017190NIP7coord: 1..187
score: 3.2
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..187
score: 1.4
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..187
score: 1.4
NoneNo IPR availableunknownSSF88802Pre-PUA domaincoord: 1..101
score: 1.63

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006657Csa3G153740Cucumber (Chinese Long) v2cumeB236
MELO3C006657Cla021732Watermelon (97103) v1mewmB461
MELO3C006657Cla97C05G087510Watermelon (97103) v2mewmbB434
MELO3C006657Bhi01G000708Wax gourdmewgoB529
MELO3C006657CSPI03G14340Wild cucumber (PI 183967)cpimeB230
MELO3C006657Cucsa.253160Cucumber (Gy14) v1cgymeB439
MELO3C006657CmaCh14G016250Cucurbita maxima (Rimu)cmameB242
MELO3C006657CmaCh06G014930Cucurbita maxima (Rimu)cmameB763
MELO3C006657CmoCh06G014890Cucurbita moschata (Rifu)cmomeB755
MELO3C006657CmoCh14G016630Cucurbita moschata (Rifu)cmomeB230
MELO3C006657Lsi05G015330Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006657Cp4.1LG03g11430Cucurbita pepo (Zucchini)cpemeB585
MELO3C006657Cp4.1LG08g04720Cucurbita pepo (Zucchini)cpemeB813
MELO3C006657CsGy3G014490Cucumber (Gy14) v2cgybmeB200
MELO3C006657Carg20115Silver-seed gourdcarmeB0828
MELO3C006657Carg17349Silver-seed gourdcarmeB0610
MELO3C006657CsaV3_3G014560Cucumber (Chinese Long) v3cucmeB236
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006657Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006657Cucumber (Gy14) v2cgybmeB070
MELO3C006657Silver-seed gourdcarmeB0074
MELO3C006657Silver-seed gourdcarmeB0701
MELO3C006657Cucumber (Chinese Long) v3cucmeB510
MELO3C006657Watermelon (97103) v2mewmbB448
MELO3C006657Wax gourdmewgoB521
MELO3C006657Melon (DHL92) v3.5.1memeB051
MELO3C006657Melon (DHL92) v3.5.1memeB113
MELO3C006657Cucumber (Gy14) v1cgymeB307
MELO3C006657Cucurbita maxima (Rimu)cmameB342
MELO3C006657Cucurbita maxima (Rimu)cmameB850
MELO3C006657Cucurbita moschata (Rifu)cmomeB335
MELO3C006657Cucurbita moschata (Rifu)cmomeB832
MELO3C006657Wild cucumber (PI 183967)cpimeB080
MELO3C006657Wild cucumber (PI 183967)cpimeB501
MELO3C006657Cucumber (Chinese Long) v2cumeB499
MELO3C006657Watermelon (Charleston Gray)mewcgB427
MELO3C006657Watermelon (Charleston Gray)mewcgB442
MELO3C006657Watermelon (97103) v1mewmB486
MELO3C006657Cucurbita pepo (Zucchini)cpemeB140
MELO3C006657Cucurbita pepo (Zucchini)cpemeB144
MELO3C006657Cucurbita pepo (Zucchini)cpemeB314