Carg20115 (gene) Silver-seed gourd

Overview
NameCarg20115
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S ribosome subunit biogenesis protein NIP7 homolog
LocationCucurbita_argyrosperma_scaffold_168 : 216914 .. 217477 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTTCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGACGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTAAGGATGGAAGATGAGCTTTAA

mRNA sequence

ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTTCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGACGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTAAGGATGGAAGATGAGCTTTAA

Coding sequence (CDS)

ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTTCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGCTCTCGGCACCTGCATCGGAAAGTTCACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTCGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGACGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTAAGGATGGAAGATGAGCTTTAA

Protein sequence

MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL
Homology
[Close]
BLAST of Carg20115 vs. NCBI nr
Match: XP_022956278.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956279.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956280.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956281.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956282.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956283.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956284.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata])

HSP 1 Score: 386.0 bits (990), Expect = 7.5e-104
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLL+SNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. NCBI nr
Match: XP_022979935.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979936.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979937.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979939.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979940.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979941.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 383.6 bits (984), Expect = 3.7e-103
Identity = 185/187 (98.93%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.8 bits (974), Expect = 5.4e-102
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGP  NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

[Close]
BLAST of Carg20115 vs. NCBI nr
Match: XP_022973782.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 377.9 bits (969), Expect = 2.0e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVHSLGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSD+PLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. NCBI nr
Match: XP_022948024.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_023539905.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 3.5e-101
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLVALGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. TAIR10
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 325.9 bits (834), Expect = 1.7e-89
Identity = 153/187 (81.82%), Postives = 169/187 (90.37%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KF GNNLK IVENPS EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ SL +L++NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]
BLAST of Carg20115 vs. Swiss-Prot
Match: sp|A4QND5|NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.0e-61
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+A KSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of Carg20115 vs. Swiss-Prot
Match: sp|Q6DFH9|NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 113/187 (60.43%), Postives = 139/187 (74.33%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV+ GTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+A KSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]
BLAST of Carg20115 vs. Swiss-Prot
Match: sp|Q4T2X8|NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 109/187 (58.29%), Postives = 138/187 (73.80%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + +L  L+  AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFG+A KSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]
BLAST of Carg20115 vs. Swiss-Prot
Match: sp|Q9WV50|NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 110/187 (58.82%), Postives = 137/187 (73.26%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+A KSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]
BLAST of Carg20115 vs. Swiss-Prot
Match: sp|Q9Y221|NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-58
Identity = 109/187 (58.29%), Postives = 137/187 (73.26%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV+LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+A KSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]
BLAST of Carg20115 vs. TrEMBL
Match: tr|A0A0A0L578|A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 8.2e-99
Identity = 178/187 (95.19%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. TrEMBL
Match: tr|A0A1S3AXI3|A0A1S3AXI3_CUCME (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=LOC103483837 PE=3 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 6.9e-98
Identity = 177/187 (94.65%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENPSHEG E NPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV+LGTCIGKFTHGGSFHLTV SLGLLS NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. TrEMBL
Match: tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 GN=LOC108995067 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 3.2e-95
Identity = 171/187 (91.44%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETT+VFEKL KFTGNNLK+IVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTSVFEKLFKFTGNNLKSIVENPSHEGPESNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+ LV+LGTCIGKFTHGGSFHLTV SL +L+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARTQLVSLGTCIGKFTHGGSFHLTVQSLSILAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIA GDGVVV+SMSDVPLGFGIA KSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIATGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. TrEMBL
Match: tr|A0A2P5DZX2|A0A2P5DZX2_PARAD (60S ribosome subunit biogenesis protein NIP7 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_017090 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 7.2e-95
Identity = 169/187 (90.37%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEK+ KFTGNNLKNIVENPSHEGP+  PGRYCFRL+KNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKIFKFTGNNLKNIVENPSHEGPDSEPGRYCFRLNKNKVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR+NLV+LGTCIGKFTHGGSFHLTV  L LLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTNLVSLGTCIGKFTHGGSFHLTVQCLSLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVV+SMSDVPLGFG+A KSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVFSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]
BLAST of Carg20115 vs. TrEMBL
Match: tr|A0A2P5E6J4|A0A2P5E6J4_9ROSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Trema orientalis OX=63057 GN=TorRG33x02_230520 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.6e-94
Identity = 168/187 (89.84%), Postives = 179/187 (95.72%), Query Frame = 0 

Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEK+ KFTGNNLKNIVENPSHEGP+  PGRYCFRL+KNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKIFKFTGNNLKNIVENPSHEGPDSEPGRYCFRLNKNKVYYVSESLV 60

Query: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATN+AR+NLV+LGTCIGKFTHGGSFHLTV  L LL+SNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTNLVSLGTCIGKFTHGGSFHLTVQCLSLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENIAPGDGVVV+SMSDVPLGFG+A KSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVFSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:
BLAST of Carg20115 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022956278.17.5e-10499.4760S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02... [more]
XP_022979935.13.7e-10398.9360S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_0229... [more]
XP_023528444.15.4e-10298.4060S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo... [more]
XP_022973782.12.0e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima][more]
XP_022948024.13.5e-10196.2660S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02... [more]
BLAST of Carg20115 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15770.11.7e-8981.82RNA binding[more]
BLAST of Carg20115 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4QND5|NIP7_XENTR7.0e-6160.4360S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83... [more]
sp|Q6DFH9|NIP7_XENLA1.2e-6060.4360S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G... [more]
sp|Q4T2X8|NIP7_TETNG2.2e-5958.2960S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O... [more]
sp|Q9WV50|NIP7_RAT1.5e-5858.8260S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101... [more]
sp|Q9Y221|NIP7_HUMAN2.5e-5858.2960S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=... [more]
BLAST of Carg20115 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L578|A0A0A0L578_CUCSA8.2e-9995.1960S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus OX=3659 ... [more]
tr|A0A1S3AXI3|A0A1S3AXI3_CUCME6.9e-9894.6560S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A2I4F3A0|A0A2I4F3A0_9ROSI3.2e-9591.4460S ribosome subunit biogenesis protein NIP7 homolog OS=Juglans regia OX=51240 G... [more]
tr|A0A2P5DZX2|A0A2P5DZX2_PARAD7.2e-9590.3760S ribosome subunit biogenesis protein NIP7 homolog OS=Parasponia andersonii OX... [more]
tr|A0A2P5E6J4|A0A2P5E6J4_9ROSA1.6e-9489.8460S ribosome subunit biogenesis protein NIP7 homolog OS=Trema orientalis OX=6305... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_sf
IPR016686Ribosomal_synth_fac_NIP7
IPR036974PUA_sf
IPR005155Rbsml_synth_fac_NIP7-like
IPR002478PUA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20115-RACarg20115-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 103..178
e-value: 2.8E-16
score: 70.1
IPR002478PUA domainPROSITEPS50890PUAcoord: 102..178
score: 14.435
IPR005155Ribosome biogenesis factor NIP7-likePFAMPF03657UPF0113coord: 48..182
e-value: 5.4E-9
score: 36.1
IPR036974PUA domain superfamilyGENE3DG3DSA:2.30.130.10coord: 102..187
e-value: 6.8E-43
score: 146.5
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..187
e-value: 1.3E-78
score: 260.5
NoneNo IPR availableGENE3DG3DSA:3.10.450.220coord: 1..101
e-value: 8.2E-36
score: 123.8
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..187
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..187
NoneNo IPR availableSUPERFAMILYSSF88802Pre-PUA domaincoord: 1..101
IPR015947PUA-like superfamilySUPERFAMILYSSF88697PUA domain-likecoord: 103..178

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20115Cla021732Watermelon (97103) v1carwmB0834
Carg20115Csa3G153740Cucumber (Chinese Long) v2carcuB0854
Carg20115MELO3C006657Melon (DHL92) v3.5.1carmeB0828
Carg20115CSPI03G14340Wild cucumber (PI 183967)carcpiB0874
Carg20115Cucsa.253160Cucumber (Gy14) v1carcgyB0960
Carg20115CmaCh06G014930Cucurbita maxima (Rimu)carcmaB1155
Carg20115CmaCh14G016250Cucurbita maxima (Rimu)carcmaB1153
Carg20115CmoCh14G016630Cucurbita moschata (Rifu)carcmoB1123
Carg20115CmoCh06G014890Cucurbita moschata (Rifu)carcmoB1125
Carg20115Lsi05G015330Bottle gourd (USVL1VR-Ls)carlsiB761
Carg20115Cp4.1LG08g04720Cucurbita pepo (Zucchini)carcpeB1165
Carg20115Cp4.1LG03g11430Cucurbita pepo (Zucchini)carcpeB1164
Carg20115CsGy3G014490Cucumber (Gy14) v2carcgybB0828
Carg20115MELO3C006657.2Melon (DHL92) v3.6.1carmedB0840
Carg20115CsaV3_3G014560Cucumber (Chinese Long) v3carcucB0878
Carg20115Cla97C05G087510Watermelon (97103) v2carwmbB0867
Carg20115Bhi01G000708Wax gourdcarwgoB0972
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20115Carg17349Silver-seed gourdcarcarB544
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20115Silver-seed gourdcarcarB087
Carg20115Cucurbita maxima (Rimu)carcmaB1154
Carg20115Cucurbita maxima (Rimu)carcmaB1156
Carg20115Cucurbita moschata (Rifu)carcmoB1124
Carg20115Cucurbita moschata (Rifu)carcmoB1126
Carg20115Cucurbita pepo (Zucchini)carcpeB1163
Carg20115Bottle gourd (USVL1VR-Ls)carlsiB760
Carg20115Melon (DHL92) v3.5.1carmeB0827
Carg20115Melon (DHL92) v3.6.1carmedB0839
Carg20115Watermelon (Charleston Gray)carwcgB0807
Carg20115Watermelon (Charleston Gray)carwcgB0808
Carg20115Watermelon (97103) v1carwmB0835
Carg20115Watermelon (97103) v2carwmbB0868