Cp4.1LG08g04720 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g04720
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	Cp4.1LG08 : 1290371 .. 1290934 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCCTAGACGAGAAAGAGACCACCGCCGTGTTCGAAAAGCTCCACAAATTCACTGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTTTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

mRNA sequence

ATGAGGCCCCTAGACGAGAAAGAGACCACCGCCGTGTTCGAAAAGCTCCACAAATTCACTGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTTTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Coding sequence (CDS)

ATGAGGCCCCTAGACGAGAAAGAGACCACCGCCGTGTTCGAAAAGCTCCACAAATTCACTGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTTTATTACGTCAGCGATTCTCTCGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACGCGCTAGGTCTCTTGTCTGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGACGTGCCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA

Protein sequence

MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLVKRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

[Close]

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-61
Identity = 114/187 (60.96%), Postives = 142/187 (75.94%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot
Match: NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-61
Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR+ LV+ GTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot
Match: NIP7_TETNG (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.6e-60
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV++GTC GKFT    F L + AL  L+  A+ KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN A   GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-59
Identity = 111/187 (59.36%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.4e-59
Identity = 110/187 (58.82%), Postives = 139/187 (74.33%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           K A N++ + LV+LGTC GKFT    F L V AL  L+  A++KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]

BLAST of Cp4.1LG08g04720 vs. TrEMBL
Match: A0A0A0L578_CUCSA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3G153740 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 2.2e-98
Identity = 175/187 (93.58%), Postives = 181/187 (96.79%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENP+HEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV+LGTCIGKFTHGGSFHLTV +LGLLS NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. TrEMBL
Match: V4S7H0_9ROSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CICLE_v10005994mg PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-94
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ AL L++ANARHKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. TrEMBL
Match: A0A067G876_CITSI (60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN_1g029802mg PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.6e-94
Identity = 165/187 (88.24%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ AL L++ANARHKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFG+AAKS QDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSMQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. TrEMBL
Match: M5WSP1_PRUPE (60S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_ppa012007mg PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.8e-92
Identity = 163/187 (87.17%), Postives = 177/187 (94.65%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ + GRYCFRLHKNKVYYVS+SLV
Sbjct: 1   MRPLDETETTAVFEKLFKFTGNNLKNIVENPSHEGPDPDSGRYCFRLHKNKVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIG+FTHGGSFHLTV  L L+++NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNIARTQLVSLGTCIGRFTHGGSFHLTVQCLSLVASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQTDIGEY 180

Query: 181 LRMEDEL 188
           LRMED+L
Sbjct: 181 LRMEDDL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. TrEMBL
Match: A0A061EP89_THECC (60S ribosome subunit biogenesis protein NIP7 homolog OS=Theobroma cacao GN=TCM_021193 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 5.3e-92
Identity = 161/186 (86.56%), Postives = 177/186 (95.16%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEK+ KFTGNNLKNIVENP+HEGP+QNPGRYCFRLHKNKVYYVS+SLV
Sbjct: 1   MRPLDEKETTAVFEKIFKFTGNNLKNIVENPSHEGPDQNPGRYCFRLHKNKVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR  L ++GTCIGKFTHGG+FHLTV  L LL+ANA+HKVWLKPTSEMSFLY NH
Sbjct: 61  KRATNVARPKLASIGTCIGKFTHGGNFHLTVECLNLLAANAKHKVWLKPTSEMSFLYANH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITE+IAPGDGVV++SMSD+PLGFGIAAKSTQDCRKLDPN IVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITESIAPGDGVVIFSMSDLPLGFGIAAKSTQDCRKLDPNAIVVLHQADIGEY 180

Query: 181 LRMEDE 187
           LRME++
Sbjct: 181 LRMENQ 186

[Close]

BLAST of Cp4.1LG08g04720 vs. TAIR10
Match: AT4G15770.1 (AT4G15770.1 RNA binding)

HSP 1 Score: 325.9 bits (834), Expect = 1.7e-89
Identity = 152/187 (81.28%), Postives = 170/187 (90.91%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KF GNNLK IVENP+ EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV+ GTCIGK+TH GSFHLT+ +L +L+ANA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. NCBI nr
Match: gi|449432838|ref|XP_004134205.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 3.2e-98
Identity = 175/187 (93.58%), Postives = 181/187 (96.79%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENP+HEG E NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV+LGTCIGKFTHGGSFHLTV +LGLLS NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. NCBI nr
Match: gi|659076807|ref|XP_008438877.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 174/187 (93.05%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE+ETT VFEKLHKFTGNNLKNIVENP+HEG E NPGRYCFRL KNKVYYVSDSLV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGTEPNPGRYCFRLQKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV+LGTCIGKFTHGGSFHLTV +LGLLS NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. NCBI nr
Match: gi|567852875|ref|XP_006419601.1| (hypothetical protein CICLE_v10005994mg [Citrus clementina])

HSP 1 Score: 354.0 bits (907), Expect = 1.6e-94
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ AL L++ANARHKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSMSDVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. NCBI nr
Match: gi|470121178|ref|XP_004296658.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 353.6 bits (906), Expect = 2.1e-94
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRL+KNKVYYVSDSLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLNKNKVYYVSDSLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR NLV+LGTCIGKFTHGGSFHLTV  L LL++NA+HKVWLKPTSEMS+LYGNH
Sbjct: 61  KRATNIARLNLVSLGTCIGKFTHGGSFHLTVQCLSLLASNAKHKVWLKPTSEMSYLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRITENI PGDGVVV+SMSD+PLGFGIAAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITENIVPGDGVVVFSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Cp4.1LG08g04720 vs. NCBI nr
Match: gi|568871876|ref|XP_006489105.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Citrus sinensis])

HSP 1 Score: 352.1 bits (902), Expect = 6.2e-94
Identity = 165/187 (88.24%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETTAVFEKL KFTGNNLKNIVENP+HEGP+ NPGRYCFRLHKN+VYYVS+SLV
Sbjct: 1   MRPLDEAETTAVFEKLFKFTGNNLKNIVENPSHEGPDPNPGRYCFRLHKNRVYYVSESLV 60

Query: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120
           KRATN+AR  LV+LGTCIGKFTHGG FHLT+ AL L++ANARHKVW+KPTSEMSFLYGNH
Sbjct: 61  KRATNIARPKLVSLGTCIGKFTHGGKFHLTIQALSLVAANARHKVWIKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           VLKGGLGRIT++IAPGDGVVVYSM DVPLGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITDSIAPGDGVVVYSMCDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g04720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NIP7_XENTR	1.8e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=ni...	[more]
NIP7_XENLA	3.1e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 P...	[more]
NIP7_TETNG	7.6e-60	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis G...	[more]
NIP7_RAT	3.8e-59	59.36	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip...	[more]
NIP7_HUMAN	6.4e-59	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=...	[more]

BLAST of Cp4.1LG08g04720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L578_CUCSA	2.2e-98	93.58	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucumis sativus GN=Csa_3...	[more]
V4S7H0_9ROSI	1.1e-94	88.77	60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus clementina GN=CIC...	[more]
A0A067G876_CITSI	5.6e-94	88.24	60S ribosome subunit biogenesis protein NIP7 homolog OS=Citrus sinensis GN=CISIN...	[more]
M5WSP1_PRUPE	1.8e-92	87.17	60S ribosome subunit biogenesis protein NIP7 homolog OS=Prunus persica GN=PRUPE_...	[more]
A0A061EP89_THECC	5.3e-92	86.56	60S ribosome subunit biogenesis protein NIP7 homolog OS=Theobroma cacao GN=TCM_0...	[more]

BLAST of Cp4.1LG08g04720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15770.1	1.7e-89	81.28	RNA binding	[more]

BLAST of Cp4.1LG08g04720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432838\|ref\|XP_004134205.1\|	3.2e-98	93.58	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus...	[more]
gi\|659076807\|ref\|XP_008438877.1\|	2.7e-97	93.05	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]	[more]
gi\|567852875\|ref\|XP_006419601.1\|	1.6e-94	88.77	hypothetical protein CICLE_v10005994mg [Citrus clementina]	[more]
gi\|470121178\|ref\|XP_004296658.1\|	2.1e-94	89.30	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Fragaria vesca ...	[more]
gi\|568871876\|ref\|XP_006489105.1\|	6.2e-94	88.24	PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Citrus sinensis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0042255	ribosome assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR016686	Ribosomal_synth_fac_NIP7
IPR015947	PUA-like_sf
IPR005155	Rbsml_synth_fac_NIP7-like
IPR002478	PUA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g04720.1	Cp4.1LG08g04720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 score: 3.1
IPR002478	PUA domain	PROFILE	PS50890	PUA	coord: 102..178 score: 14
IPR005155	Ribosome biogenesis factor NIP7-like	PFAM	PF03657	UPF0113	coord: 48..182 score: 5.
IPR015947	PUA-like domain	GENE3D	G3DSA:2.30.130.10		coord: 102..187 score: 4.4
IPR015947	PUA-like domain	unknown	SSF88697	PUA domain-like	coord: 103..178 score: 6.08
IPR016686	Ribosome biogenesis factor, NIP7	PIR	PIRSF017190	NIP7	coord: 1..187 score: 2.3
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187 score: 1.0
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187 score: 1.0
None	No IPR available	unknown	SSF88802	Pre-PUA domain	coord: 1..101 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g04720	Cucsa.253160	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g04720	CmaCh14G016250	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g04720	CmaCh06G014930	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g04720	CmoCh06G014890	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g04720	CmoCh14G016630	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g04720	Cla021732	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g04720	Csa3G153740	Cucumber (Chinese Long) v2	cpecuB859
Cp4.1LG08g04720	MELO3C006657	Melon (DHL92) v3.5.1	cpemeB813
Cp4.1LG08g04720	CSPI03G14340	Wild cucumber (PI 183967)	cpecpiB861
Cp4.1LG08g04720	Lsi05G015330	Bottle gourd (USVL1VR-Ls)	cpelsiB718
Cp4.1LG08g04720	MELO3C006657.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g04720	CsaV3_3G014560	Cucumber (Chinese Long) v3	cpecucB1056
Cp4.1LG08g04720	Bhi01G000708	Wax gourd	cpewgoB1110
Cp4.1LG08g04720	CsGy3G014490	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g04720	Carg20115	Silver-seed gourd	carcpeB1165
Cp4.1LG08g04720	Carg17349	Silver-seed gourd	carcpeB0861

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g04720	Cp4.1LG03g11430	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g04720	Melon (DHL92) v3.6.1	cpemedB933
Cp4.1LG08g04720	Silver-seed gourd	carcpeB0109
Cp4.1LG08g04720	Silver-seed gourd	carcpeB0165
Cp4.1LG08g04720	Silver-seed gourd	carcpeB0987
Cp4.1LG08g04720	Cucumber (Chinese Long) v3	cpecucB1073
Cp4.1LG08g04720	Wax gourd	cpewgoB1095
Cp4.1LG08g04720	Cucurbita pepo (Zucchini)	cpecpeB193
Cp4.1LG08g04720	Cucurbita pepo (Zucchini)	cpecpeB194
Cp4.1LG08g04720	Cucurbita pepo (Zucchini)	cpecpeB343
Cp4.1LG08g04720	Cucurbita maxima (Rimu)	cmacpeB410
Cp4.1LG08g04720	Cucurbita maxima (Rimu)	cmacpeB412
Cp4.1LG08g04720	Cucurbita maxima (Rimu)	cmacpeB931
Cp4.1LG08g04720	Cucurbita moschata (Rifu)	cmocpeB371
Cp4.1LG08g04720	Cucurbita moschata (Rifu)	cmocpeB373
Cp4.1LG08g04720	Cucurbita moschata (Rifu)	cmocpeB866
Cp4.1LG08g04720	Bottle gourd (USVL1VR-Ls)	cpelsiB697
Cp4.1LG08g04720	Bottle gourd (USVL1VR-Ls)	cpelsiB705
Cp4.1LG08g04720	Watermelon (Charleston Gray)	cpewcgB763
Cp4.1LG08g04720	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g04720	Watermelon (Charleston Gray)	cpewcgB788
Cp4.1LG08g04720	Watermelon (97103) v1	cpewmB824
Cp4.1LG08g04720	Watermelon (97103) v1	cpewmB853
Cp4.1LG08g04720	Melon (DHL92) v3.5.1	cpemeB793
Cp4.1LG08g04720	Cucumber (Gy14) v2	cgybcpeB885
Cp4.1LG08g04720	Cucumber (Gy14) v2	cgybcpeB989