Lsi05G007520 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G007520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING/U-box superfamily protein
Locationchr05 : 10388968 .. 10389540 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACCGCATTTTCGGTCGTATTCGTCGTCTTCATCTCCATCATCATCTTCTCCGTGGTCGCATCCTTTGCAATCATCATCTTCATCTATGTCATTTGCCAATACCTAATTGGGCCGACGAATTTAGACGGACACGGTCCCGACCTCGAAGCAGGTGAGAGAGTCGAAAACCAAAGAATGATCCCAAGGGGTAGGATTTTGGTATCTCATCATCAAACAAGTACTGATCATGGGAGAGACATGGAGAGGTTTGAAAGCAATGCATGGAGGGAGGCTTTGGAGAGAACAGTAATGGTAGAGAAAGTGACGGCGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATTTGTTTGGAAGATTTTGAAAATGGAGAGCTTTGCCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGACAACTGCTGA

mRNA sequence

ATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACCGCATTTTCGGTCGTATTCGTCGTCTTCATCTCCATCATCATCTTCTCCGTGGTCGCATCCTTTGCAATCATCATCTTCATCTATGTCATTTGCCAATACCTAATTGGGCCGACGAATTTAGACGGACACGGTCCCGACCTCGAAGCAGGTGAGAGAGTCGAAAACCAAAGAATGATCCCAAGGGGTAGGATTTTGGTATCTCATCATCAAACAAGTACTGATCATGGGAGAGACATGGAGAGGTTTGAAAGCAATGCATGGAGGGAGGCTTTGGAGAGAACAGTAATGGTAGAGAAAGTGACGGCGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATTTGTTTGGAAGATTTTGAAAATGGAGAGCTTTGCCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGACAACTGCTGA

Coding sequence (CDS)

ATGATCCCTCAAGCTCTTAGTGTTCCACAATCCAACCCTCCTCCTTCAATCCTCCCTTTCCTCACCGCATTTTCGGTCGTATTCGTCGTCTTCATCTCCATCATCATCTTCTCCGTGGTCGCATCCTTTGCAATCATCATCTTCATCTATGTCATTTGCCAATACCTAATTGGGCCGACGAATTTAGACGGACACGGTCCCGACCTCGAAGCAGGTGAGAGAGTCGAAAACCAAAGAATGATCCCAAGGGGTAGGATTTTGGTATCTCATCATCAAACAAGTACTGATCATGGGAGAGACATGGAGAGGTTTGAAAGCAATGCATGGAGGGAGGCTTTGGAGAGAACAGTAATGGTAGAGAAAGTGACGGCGCCGGTGAGCTATGGGAGCTCCGAGGCGGTGGCGAAATGCATTGATTGTGCAATTTGTTTGGAAGATTTTGAAAATGGAGAGCTTTGCCAGATTTTTCCAGTGTGTAATCACATTTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGTCAATGACAACTGCTGA

Protein sequence

MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPTNLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRDMERFESNAWREALERTVMVEKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVNDNC
Homology
[Close]
BLAST of Lsi05G007520 vs. Swiss-Prot
Match: ATL19_ARATH (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-12
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 1 

Query: 11  SNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGP---TNLDGHGP 70
           S+     +  ++   +   + + I++  ++A+ A+I+ IYVI   ++ P   T LD    
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLD---L 61

Query: 71  DLEAGERVENQRMIPRGRILVSHHQTSTDHGRDMERFESNAWREALERTVMVEKVTAPVS 130
           DLE G     QR   R RI+  H   ST  G  +  FE    +  L+++V +E +   + 
Sbjct: 62  DLEIGV----QRGQQRARIVTYHTIIST--GLRLPDFEREGKKRGLKQSV-IETLLPKLL 121

Query: 131 YGSS------EAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPIC 183
            G        E   +  +CAICL  +   E C++FPVC HI+H  CI  WLK ++TCP C
Sbjct: 122 VGQGNHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTC 172

[Close]
BLAST of Lsi05G007520 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 1 

Query: 90  HHQTSTDHGRDM----ERFESNAWREALERTVMVEKVTAPVS---YGSSEAVAKCIDCAI 149
           HHQTS+    ++    E F S+  R +     + E +   ++   Y S +      DC++
Sbjct: 85  HHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSV 144

Query: 150 CLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVNDN 190
           CL +FE  E  ++ P CNH FH  CI  WLK +  CP+CR  +   N
Sbjct: 145 CLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVN 191

[Close]
BLAST of Lsi05G007520 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 128 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  ++ P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]
BLAST of Lsi05G007520 vs. Swiss-Prot
Match: ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 89  SHHQTSTDHGRDMERFESNAWREALERTVMVE-KVTAPVSYGSSEAVAKCIDCAICLEDF 148
           S+  +ST + R+    + ++ R  L+  V+    V A  S   S+  +K ++CAICL + 
Sbjct: 73  SNPDSSTRYFRNRAN-DGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNEL 132

Query: 149 ENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSI 186
           E+ E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Sbjct: 133 EDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]
BLAST of Lsi05G007520 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1 

Query: 111 EALERTVMVEKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQH 170
           E+L +++ V K      Y   +   +  DC++CL +F+  E  ++ P CNH FH  CI  
Sbjct: 136 ESLIKSITVYK------YRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDT 195

Query: 171 WLKKNMTCPICRCSIVNDN 190
           WLK +  CP+CR  IV  +
Sbjct: 196 WLKSHSNCPLCRAFIVTSS 208

[Close]
BLAST of Lsi05G007520 vs. TrEMBL
Match: A0A0A0L6M6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.8e-82
Identity = 157/189 (83.07%), Postives = 171/189 (90.48%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FI+IIIFSVVASFAII+ IYVIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LDGH  +LEAGE  ENQ MI R RIL++HHQTS+ HGRD MER ESNAWRE +ERT+M+
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSS-HGRDIMERSESNAWREDMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCP 180
           EKV APVSYGSSEA  KCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCP
Sbjct: 121 EKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCP 180

Query: 181 ICRCSIVND 189
           ICRCSIVND
Sbjct: 181 ICRCSIVND 188

[Close]
BLAST of Lsi05G007520 vs. TrEMBL
Match: E5GBS2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FISIIIFSVVASFAIIIFIY+IC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LD H  DLEAGE  ENQRMI R RIL++HHQTS+ HGRD MER ESN WRE +ERT+M+
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSS-HGRDIMERSESNTWREGMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 159
           EKV APVSYGSSE VAKCIDCAICLEDFENGELCQ FP+
Sbjct: 121 EKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]
BLAST of Lsi05G007520 vs. TrEMBL
Match: M5WWP2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015864mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.3e-17
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 

Query: 110 REALERTVMVE-KVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCI 169
           R   +R  ++E K+  P++YGS E    C DC IC+EDFE  +LCQ+FP CNH FH  C+
Sbjct: 9   RHQRDREQLLENKLPPPIAYGSHEIEMNCKDCVICMEDFETDQLCQVFPSCNHTFHSKCM 68

Query: 170 QHWLKKNMTCPICRCSIVN 188
             WLKK++TCPICR S+++
Sbjct: 69  NTWLKKSLTCPICRNSVLD 87

[Close]
BLAST of Lsi05G007520 vs. TrEMBL
Match: A0A0D2M7R2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G070700 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.4e-17
Identity = 59/168 (35.12%), Postives = 88/168 (52.38%), Query Frame = 1 

Query: 15  PSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPTNLDGHGPDLEAGER 74
           P I+  LTA  +  V+   I+   ++A+  + IFIYVIC+ L  P         L  G  
Sbjct: 16  PLIISSLTALGIAIVLLSCIVGACIIATSFVFIFIYVICECLSWPIFEKLFSDILRRG-- 75

Query: 75  VENQRMIPRGRILVSHHQTSTDHGRDMERFESNAWREALERTVMVEKVTAPVSYGSSEAV 134
           +   R      I+V++ Q        +E F  +     L R   +EK+  P++YG  +  
Sbjct: 76  IHRVRTATYRAIVVNYVQPLDM----LEGFPESINGRLLLRQQALEKLLPPMAYGVDKHA 135

Query: 135 AKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICR 183
            K  +C ICL+D+  GE C++FP C H+FH SCI HWLK ++TCP+CR
Sbjct: 136 LKSSECPICLDDYVVGESCRVFPDCKHMFHLSCIDHWLKNHLTCPVCR 177

[Close]
BLAST of Lsi05G007520 vs. TrEMBL
Match: A0A061F6J4_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_031495 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 1 

Query: 15  PSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPTNLDGHGPDLEAGER 74
           P I+  +TA  +VF++   +I   ++A+  II+ IY+IC+ L  P  + G          
Sbjct: 203 PLIVSLITAIGIVFLLLSCLIGVCIIATSFIILIIYIICECLSWP--IFGKFISDLLRRA 262

Query: 75  VENQRMIPRGRILVSHHQTSTDHGRDMERFESNAWREALERTVMVEKVTAPVSYGSSEAV 134
           +   R++    I+ ++ Q S       E F  +     + R    EK+  P+ YG     
Sbjct: 263 IHRVRVVTYQAIIPNYLQPSGM----TEGFPQSTDDRVMLRQQTFEKLLRPMIYGVGSHP 322

Query: 135 AKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICR 183
            K  DCAICL+D+  GE+C++FP C H FH SCI HWL+ + TCP+CR
Sbjct: 323 LKSRDCAICLDDYVVGEVCRVFPACKHTFHLSCIDHWLENHRTCPVCR 364

[Close]
BLAST of Lsi05G007520 vs. TAIR10
Match: AT1G53010.1 (AT1G53010.1 RING/U-box superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 1 

Query: 11  SNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGP---TNLDGHGP 70
           S+     +  ++   +   + + I++  ++A+ A+I+ IYVI   ++ P   T LD    
Sbjct: 2   SSEEDDAISLISVLGLAVFIGLCILLVVLIATSALILVIYVIIDCILRPFLGTCLD---L 61

Query: 71  DLEAGERVENQRMIPRGRILVSHHQTSTDHGRDMERFESNAWREALERTVMVEKVTAPVS 130
           DLE G     QR   R RI+  H   ST  G  +  FE    +  L+++V +E +   + 
Sbjct: 62  DLEIGV----QRGQQRARIVTYHTIIST--GLRLPDFEREGKKRGLKQSV-IETLLPKLL 121

Query: 131 YGSS------EAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPIC 183
            G        E   +  +CAICL  +   E C++FPVC HI+H  CI  WLK ++TCP C
Sbjct: 122 VGQGNHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTC 172

[Close]
BLAST of Lsi05G007520 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-12
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 1 

Query: 90  HHQTSTDHGRDM----ERFESNAWREALERTVMVEKVTAPVS---YGSSEAVAKCIDCAI 149
           HHQTS+    ++    E F S+  R +     + E +   ++   Y S +      DC++
Sbjct: 85  HHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSV 144

Query: 150 CLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVNDN 190
           CL +FE  E  ++ P CNH FH  CI  WLK +  CP+CR  +   N
Sbjct: 145 CLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVN 191

[Close]
BLAST of Lsi05G007520 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-12
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 128 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  ++ P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]
BLAST of Lsi05G007520 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1 

Query: 128 YGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVN 187
           Y   + V +  DC++CL +FE  E  ++ P C H FH  CI  WL+ +  CP+CR  IV 
Sbjct: 205 YSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPIVE 264

Query: 188 DN 190
            N
Sbjct: 265 AN 266

[Close]
BLAST of Lsi05G007520 vs. TAIR10
Match: AT4G40070.1 (AT4G40070.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 89  SHHQTSTDHGRDMERFESNAWREALERTVMVE-KVTAPVSYGSSEAVAKCIDCAICLEDF 148
           S+  +ST + R+    + ++ R  L+  V+    V A  S   S+  +K ++CAICL + 
Sbjct: 73  SNPDSSTRYFRNRAN-DGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNEL 132

Query: 149 ENGELCQIFPVCNHIFHYSCIQHWLKKNMTCPICRCSI 186
           E+ E  ++ P+CNH+FH  CI  WL  + TCP+CR ++
Sbjct: 133 EDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL 169

[Close]
BLAST of Lsi05G007520 vs. NCBI nr
Match: gi|659102863|ref|XP_008452354.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo])

HSP 1 Score: 320.9 bits (821), Expect = 1.5e-84
Identity = 161/191 (84.29%), Postives = 173/191 (90.58%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FISIIIFSVVASFAIIIFIY+IC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LD H  DLEAGE  ENQRMI R RIL++HHQTS+ HGRD MER ESN WRE +ERT+M+
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSS-HGRDIMERSESNTWREGMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCP 180
           EKV APVSYGSSE VAKCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCP
Sbjct: 121 EKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCP 180

Query: 181 ICRCSIVNDNC 191
           ICRCSIVND C
Sbjct: 181 ICRCSIVNDKC 190

[Close]
BLAST of Lsi05G007520 vs. NCBI nr
Match: gi|700201109|gb|KGN56242.1| (hypothetical protein Csa_3G104950 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 5.5e-82
Identity = 157/189 (83.07%), Postives = 171/189 (90.48%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FI+IIIFSVVASFAII+ IYVIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LDGH  +LEAGE  ENQ MI R RIL++HHQTS+ HGRD MER ESNAWRE +ERT+M+
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSS-HGRDIMERSESNAWREDMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMTCP 180
           EKV APVSYGSSEA  KCIDCAICLEDFENGELCQ FPVCNHIFHYSCIQHWLKKNMTCP
Sbjct: 121 EKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCP 180

Query: 181 ICRCSIVND 189
           ICRCSIVND
Sbjct: 181 ICRCSIVND 188

[Close]
BLAST of Lsi05G007520 vs. NCBI nr
Match: gi|307136064|gb|ADN33914.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 245.4 bits (625), Expect = 8.3e-62
Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FISIIIFSVVASFAIIIFIY+IC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LD H  DLEAGE  ENQRMI R RIL++HHQTS+ HGRD MER ESN WRE +ERT+M+
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSS-HGRDIMERSESNTWREGMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPV 159
           EKV APVSYGSSE VAKCIDCAICLEDFENGELCQ FP+
Sbjct: 121 EKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]
BLAST of Lsi05G007520 vs. NCBI nr
Match: gi|778688398|ref|XP_011652743.1| (PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 5.9e-60
Identity = 126/158 (79.75%), Postives = 140/158 (88.61%), Query Frame = 1 

Query: 1   MIPQALSVPQSNPPPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPT 60
           MIPQAL+VPQSNPPPSILPFLTAFS+V V+FI+IIIFSVVASFAII+ IYVIC+YLIG T
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  NLDGHGPDLEAGERVENQRMIPRGRILVSHHQTSTDHGRD-MERFESNAWREALERTVMV 120
           +LDGH  +LEAGE  ENQ MI R RIL++HHQTS+ HGRD MER ESNAWRE +ERT+M+
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSS-HGRDIMERSESNAWREDMERTIMI 120

Query: 121 EKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFP 158
           EKV APVSYGSSEA  KCIDCAICLEDFENGELCQ FP
Sbjct: 121 EKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFP 157

[Close]
BLAST of Lsi05G007520 vs. NCBI nr
Match: gi|658063734|ref|XP_008367790.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Malus domestica])

HSP 1 Score: 113.6 bits (283), Expect = 3.7e-22
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = 1 

Query: 14  PPSILPFLTAFSVVFVVFISIIIFSVVASFAIIIFIYVICQYLIGPTNLDGHGPDLEAGE 73
           PP +   L+  S +  V++ II FS++    +I  +YVIC+++  P       PD EA  
Sbjct: 12  PPPVFSLLSLISKIIFVYVCIIAFSIMLLLIVIALLYVICEFVWTPFYERRSNPDPEA-- 71

Query: 74  RVENQRMIPRGRI------LVSHHQTSTDHG-RDMERFES---------NAWREALERTV 133
             E+Q+ + R           + +Q +  H  R +E  +S         +  ++ +   V
Sbjct: 72  --EDQQQLSRPNNGAEWNDQATFYQAAVLHNLRVLEILDSIVEVLEERRDERQQRVREQV 131

Query: 134 MVEKVTAPVSYGSSEAVAKCIDCAICLEDFENGELCQIFPVCNHIFHYSCIQHWLKKNMT 188
           +  K+  P++YGS E    C DC IC+EDFEN +LCQ+FP CNH FH +C+  WLKK++T
Sbjct: 132 LESKMPPPIAYGSQETEINCKDCVICMEDFENDQLCQVFPSCNHTFHSNCMNTWLKKSLT 191

The following BLAST results are available for this feature:
BLAST of Lsi05G007520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL19_ARATH7.8e-1231.49Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1[more]
ATL52_ARATH3.9e-1132.71RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL74_ARATH5.1e-1147.46RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1[more]
ATL32_ARATH3.3e-1034.69RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3[more]
ATL51_ARATH3.3e-1035.44RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2[more]
BLAST of Lsi05G007520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6M6_CUCSA3.8e-8283.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1[more]
E5GBS2_CUCME5.8e-6281.13Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5WWP2_PRUPE4.3e-1750.63Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015864mg PE=4 S... [more]
A0A0D2M7R2_GOSRA7.4e-1735.12Uncharacterized protein OS=Gossypium raimondii GN=B456_002G070700 PE=4 SV=1[more]
A0A061F6J4_THECC2.1e-1633.93RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_031495 PE=4 SV=1[more]
BLAST of Lsi05G007520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53010.14.4e-1331.49 RING/U-box superfamily protein[more]
AT5G17600.12.2e-1232.71 RING/U-box superfamily protein[more]
AT5G01880.12.9e-1247.46 RING/U-box superfamily protein[more]
AT4G33565.11.4e-1140.32 RING/U-box superfamily protein[more]
AT4G40070.11.9e-1134.69 RING/U-box superfamily protein[more]
BLAST of Lsi05G007520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102863|ref|XP_008452354.1|1.5e-8484.29PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo][more]
gi|700201109|gb|KGN56242.1|5.5e-8283.07hypothetical protein Csa_3G104950 [Cucumis sativus][more]
gi|307136064|gb|ADN33914.1|8.3e-6281.13hypothetical protein [Cucumis melo subsp. melo][more]
gi|778688398|ref|XP_011652743.1|5.9e-6079.75PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus][more]
gi|658063734|ref|XP_008367790.1|3.7e-2234.74PREDICTED: putative RING-H2 finger protein ATL19 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G007520.1Lsi05G007520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 139..182
score: 7.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 140..181
score: 8.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 140..182
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 136..185
score: 2.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 108..186
score: 1.5E-19coord: 9..68
score: 1.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 139..187
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G007520Csa3G104940Cucumber (Chinese Long) v2culsiB217
Lsi05G007520CSPI03G06170Wild cucumber (PI 183967)cpilsiB215
Lsi05G007520Cucsa.074760Cucumber (Gy14) v1cgylsiB075
Lsi05G007520CmaCh16G007800Cucurbita maxima (Rimu)cmalsiB313
Lsi05G007520CmaCh04G009040Cucurbita maxima (Rimu)cmalsiB687
Lsi05G007520CmoCh16G008430Cucurbita moschata (Rifu)cmolsiB302
Lsi05G007520Cla011789Watermelon (97103) v1lsiwmB355
Lsi05G007520MELO3C016514Melon (DHL92) v3.5.1lsimeB371
Lsi05G007520ClCG10G006930Watermelon (Charleston Gray)lsiwcgB319
Lsi05G007520MELO3C016514.2Melon (DHL92) v3.6.1lsimedB400
Lsi05G007520Cla97C10G190800Watermelon (97103) v2lsiwmbB323
Lsi05G007520Bhi11G000655Wax gourdlsiwgoB414
Lsi05G007520Cp4.1LG01g08560Cucurbita pepo (Zucchini)cpelsiB366
Lsi05G007520Cp4.1LG14g00270Cucurbita pepo (Zucchini)cpelsiB173
Lsi05G007520CsGy3G006270Cucumber (Gy14) v2cgyblsiB203
Lsi05G007520Carg00022Silver-seed gourdcarlsiB614
Lsi05G007520CsaV3_3G006300Cucumber (Chinese Long) v3cuclsiB235
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G007520Cucumber (Chinese Long) v3cuclsiB217
Lsi05G007520Watermelon (97103) v2lsiwmbB322
Lsi05G007520Wax gourdlsiwgoB410
Lsi05G007520Cucumber (Gy14) v1cgylsiB159
Lsi05G007520Cucurbita maxima (Rimu)cmalsiB315
Lsi05G007520Cucurbita moschata (Rifu)cmolsiB305
Lsi05G007520Cucurbita pepo (Zucchini)cpelsiB176
Lsi05G007520Cucurbita pepo (Zucchini)cpelsiB370
Lsi05G007520Wild cucumber (PI 183967)cpilsiB197
Lsi05G007520Cucumber (Chinese Long) v2culsiB198
Lsi05G007520Melon (DHL92) v3.5.1lsimeB380
Lsi05G007520Watermelon (Charleston Gray)lsiwcgB318
Lsi05G007520Cucumber (Gy14) v2cgyblsiB183
Lsi05G007520Melon (DHL92) v3.6.1lsimedB387
Lsi05G007520Silver-seed gourdcarlsiB509