Csa3G104940 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G104940
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative ring finger protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr3 : 5268394 .. 5268829 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTGCAACCAGGGGTTCTCAGAGAGCGAGCAACGTGGCAATAGGAATGAAGAAATGACTATGACTACGACAACAGTAGCGACGACGATGGTGGCCGATCCTGAGGAGCGGAATCGTCAGCTTCAAATGGCGATGGAGAAATTGACGAAGCCATCGGCATATTATAATTGTGAAGAGAATGATGAGTCTCCATCGACGTTAAGCGAATGCACGATATGTTTAGAGGATCTTGGAGAAAGAGTTTCATGTCGAGTTTTTCCTAATTGCAAGCATATATTCCATACACATTGCATAATCAATTGGTTAGAGATTAATCAAACTTGTCCGATATGTAGGACTAAGTTGTAATCCAACAACTACTCCAACTCGAGTATAGCTCAACCGATTAACGCACGTACATTTAATCTAGGTTACAAATTCATGTTGAACTAA

mRNA sequence

ATGCTGCTGCAACCAGGGGAGCGGAATCGTCAGCTTCAAATGGCGATGGAGAAATTGACGAAGCCATCGGCATATTATAATTGTGAAGAGAATGATGAGTCTCCATCGACGTTAAGCGAATGCACGATATGTTTAGAGGATCTTGGAGAAAGAGTTTCATGTCGAGTTTTTCCTAATTGCAAGCATATATTCCATACACATTGCATAATCAATTGGTTAGAGATTAATCAAACTTGTCCGATATCTCAACCGATTAACGCACGTACATTTAATCTAGGTTACAAATTCATGTTGAACTAA

Coding sequence (CDS)

ATGCTGCTGCAACCAGGGGAGCGGAATCGTCAGCTTCAAATGGCGATGGAGAAATTGACGAAGCCATCGGCATATTATAATTGTGAAGAGAATGATGAGTCTCCATCGACGTTAAGCGAATGCACGATATGTTTAGAGGATCTTGGAGAAAGAGTTTCATGTCGAGTTTTTCCTAATTGCAAGCATATATTCCATACACATTGCATAATCAATTGGTTAGAGATTAATCAAACTTGTCCGATATCTCAACCGATTAACGCACGTACATTTAATCTAGGTTACAAATTCATGTTGAACTAA

Protein sequence

MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN*

Homology

[Close]

BLAST of Csa3G104940 vs. Swiss-Prot
Match: ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 20/43 (46.51%), Postives = 26/43 (60.47%), Query Frame = 1


Query: 39  SECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           +EC +CL  L E+ + R+ PNCKH+FH  C+  WL    TCP+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPV 140

[Close]

BLAST of Csa3G104940 vs. Swiss-Prot
Match: ATL19_ARATH (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 25/54 (46.30%), Postives = 29/54 (53.70%), Query Frame = 1


Query: 27  NCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCP 81
           N EE++E      EC ICL        CRVFP C+HI+H  CI  WL+ + TCP
Sbjct: 116 NHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCP 169

[Close]

BLAST of Csa3G104940 vs. Swiss-Prot
Match: ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-07
Identity = 20/42 (47.62%), Postives = 25/42 (59.52%), Query Frame = 1


Query: 40  ECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           EC++CL +  +  S RV PNCKH FH HCI  W   + +CP+
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPL 116

[Close]

BLAST of Csa3G104940 vs. Swiss-Prot
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-07
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 1


Query: 20  TKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTC 79
           T P+  Y+  +  +      EC ICL +  +  + R+ P C H+FH HCI  WLE + TC
Sbjct: 107 TFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTC 166

Query: 80  PI 82
           P+
Sbjct: 167 PV 168

[Close]

BLAST of Csa3G104940 vs. Swiss-Prot
Match: ATL41_ARATH (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-07
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1


Query: 32  DESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           D   ++ +EC +CL  L E+   R  PNCKHIFH  C+  WL    TCP+
Sbjct: 99  DGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPV 148

[Close]

BLAST of Csa3G104940 vs. TrEMBL
Match: A0A0A0L7Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.4e-53
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 60
           MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC
Sbjct: 1   MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 60

Query: 61  KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN 100
           KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN
Sbjct: 61  KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN 99

[Close]

BLAST of Csa3G104940 vs. TrEMBL
Match: V4WEW6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010182mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-11
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 6   GERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFH 65
           GER  Q Q A+EKL     Y +   + E  S   +C+ICL+D  +   CRVFP CKHIFH
Sbjct: 81  GERREQRQEALEKLLPLVKYGSSSSSGEILSNFGDCSICLDDYRDGEFCRVFPVCKHIFH 140

Query: 66  THCIINWLEINQTCPI 82
             CI +WL    TCPI
Sbjct: 141 VKCIDHWLNNQLTCPI 156

[Close]

BLAST of Csa3G104940 vs. TrEMBL
Match: A0A067FG84_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035583mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-11
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 6   GERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFH 65
           GER  Q Q A+EKL     Y +   + E  S   +C+ICL+D  +   CRVFP CKHIFH
Sbjct: 74  GERREQRQEALEKLLPLVKYGSSSSSREILSNFGDCSICLDDYRDGEFCRVFPVCKHIFH 133

Query: 66  THCIINWLEINQTCPI 82
             CI +WL    TCPI
Sbjct: 134 VKCIDHWLNNQLTCPI 149

[Close]

BLAST of Csa3G104940 vs. TrEMBL
Match: V4URL5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010737mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-09
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 7   ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHT 66
           ER RQ +  + K+T+   Y   E    S S  S C ICLE   +  +CR+F  C HIFH 
Sbjct: 74  ERQRQREQTLNKMTRLVNYKRQETTTSSSS--SGCAICLETFADDETCRIFLVCNHIFHL 133

Query: 67  HCIINWLEINQTCPI 82
           +CI  WLEIN TCP+
Sbjct: 134 NCIDGWLEINLTCPL 146

[Close]

BLAST of Csa3G104940 vs. TrEMBL
Match: A0A0D2M7R2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G070700 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 13  QMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINW 72
           Q A+EKL  P AY      D+     SEC ICL+D     SCRVFP+CKH+FH  CI +W
Sbjct: 111 QQALEKLLPPMAY----GVDKHALKSSECPICLDDYVVGESCRVFPDCKHMFHLSCIDHW 170

Query: 73  LEINQTCPI 82
           L+ + TCP+
Sbjct: 171 LKNHLTCPV 175

[Close]

BLAST of Csa3G104940 vs. TAIR10
Match: AT2G42350.1 (AT2G42350.1 RING/U-box superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-09
Identity = 20/43 (46.51%), Postives = 26/43 (60.47%), Query Frame = 1


Query: 39  SECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           +EC +CL  L E+ + R+ PNCKH+FH  C+  WL    TCP+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPV 140

[Close]

BLAST of Csa3G104940 vs. TAIR10
Match: AT1G53010.1 (AT1G53010.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.7e-09
Identity = 25/54 (46.30%), Postives = 29/54 (53.70%), Query Frame = 1


Query: 27  NCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCP 81
           N EE++E      EC ICL        CRVFP C+HI+H  CI  WL+ + TCP
Sbjct: 116 NHEEDEEKSLESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCP 169

[Close]

BLAST of Csa3G104940 vs. TAIR10
Match: AT3G05200.1 (AT3G05200.1 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 1


Query: 20  TKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTC 79
           T P+  Y+  +  +      EC ICL +  +  + R+ P C H+FH HCI  WLE + TC
Sbjct: 107 TFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTC 166

Query: 80  PI 82
           P+
Sbjct: 167 PV 168

[Close]

BLAST of Csa3G104940 vs. TAIR10
Match: AT2G42360.1 (AT2G42360.1 RING/U-box superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 1


Query: 32  DESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           D   ++ +EC +CL  L E+   R  PNCKHIFH  C+  WL    TCP+
Sbjct: 99  DGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPV 148

[Close]

BLAST of Csa3G104940 vs. TAIR10
Match: AT2G35910.1 (AT2G35910.1 RING/U-box superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 1


Query: 33  ESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 82
           + P+T S C ICL D   +   R  P+C H+FH  CI  WL +N TCP+
Sbjct: 139 KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPV 187

[Close]

BLAST of Csa3G104940 vs. NCBI nr
Match: gi|700201108|gb|KGN56241.1| (hypothetical protein Csa_3G104940 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 6.3e-53
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 60
           MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC
Sbjct: 1   MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 60

Query: 61  KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN 100
           KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN
Sbjct: 61  KHIFHTHCIINWLEINQTCPISQPINARTFNLGYKFMLN 99

[Close]

BLAST of Csa3G104940 vs. NCBI nr
Match: gi|778688398|ref|XP_011652743.1| (PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 1   MLLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 60
           M+  P ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC
Sbjct: 183 MVADPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNC 242

Query: 61  KHIFHTHCIINWLEINQTCPI 82
           KHIFHTHCIINWLEINQTCPI
Sbjct: 243 KHIFHTHCIINWLEINQTCPI 263

[Close]

BLAST of Csa3G104940 vs. NCBI nr
Match: gi|659102865|ref|XP_008452355.1| (PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 8.3e-37
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 2   LLQPGERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCK 61
           ++ P ERNRQ+QMAMEKLTKPSAYY+CEEN+ESPST SECTICLEDLGE+VSCRVFPNCK
Sbjct: 65  MVDPEERNRQIQMAMEKLTKPSAYYDCEENNESPSTSSECTICLEDLGEKVSCRVFPNCK 124

Query: 62  HIFHTHCIINWLEINQTCPI 82
           HIFHTHCIINWLEINQTCPI
Sbjct: 125 HIFHTHCIINWLEINQTCPI 144

[Close]

BLAST of Csa3G104940 vs. NCBI nr
Match: gi|567919746|ref|XP_006451879.1| (hypothetical protein CICLE_v10010182mg [Citrus clementina])

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-11
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 6   GERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFH 65
           GER  Q Q A+EKL     Y +   + E  S   +C+ICL+D  +   CRVFP CKHIFH
Sbjct: 81  GERREQRQEALEKLLPLVKYGSSSSSGEILSNFGDCSICLDDYRDGEFCRVFPVCKHIFH 140

Query: 66  THCIINWLEINQTCPI 82
             CI +WL    TCPI
Sbjct: 141 VKCIDHWLNNQLTCPI 156

[Close]

BLAST of Csa3G104940 vs. NCBI nr
Match: gi|641843578|gb|KDO62477.1| (hypothetical protein CISIN_1g035583mg [Citrus sinensis])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1


Query: 6   GERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFH 65
           GER  Q Q A+EKL     Y +   + E  S   +C+ICL+D  +   CRVFP CKHIFH
Sbjct: 74  GERREQRQEALEKLLPLVKYGSSSSSREILSNFGDCSICLDDYRDGEFCRVFPVCKHIFH 133

Query: 66  THCIINWLEINQTCPI 82
             CI +WL    TCPI
Sbjct: 134 VKCIDHWLNNQLTCPI 149

The following BLAST results are available for this feature:

BLAST of Csa3G104940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL40_ARATH	1.1e-07	46.51	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1	[more]
ATL19_ARATH	1.4e-07	46.30	Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1	[more]
ATL17_ARATH	2.3e-07	47.62	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2	[more]
ATL6_ARATH	3.1e-07	37.10	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2	[more]
ATL41_ARATH	3.1e-07	44.00	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1	[more]

BLAST of Csa3G104940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Y8_CUCSA	4.4e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1	[more]
V4WEW6_9ROSI	3.2e-11	47.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010182mg PE=4 SV=1	[more]
A0A067FG84_CITSI	4.2e-11	47.37	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035583mg PE=4 SV=1	[more]
V4URL5_9ROSI	1.0e-09	45.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010737mg PE=4 SV=1	[more]
A0A0D2M7R2_GOSRA	1.7e-09	49.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G070700 PE=4 SV=1	[more]

BLAST of Csa3G104940 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42350.1	5.9e-09	46.51	RING/U-box superfamily protein	[more]
AT1G53010.1	7.7e-09	46.30	RING/U-box superfamily protein	[more]
AT3G05200.1	1.7e-08	37.10	RING/U-box superfamily protein	[more]
AT2G42360.1	1.7e-08	44.00	RING/U-box superfamily protein	[more]
AT2G35910.1	2.2e-08	44.90	RING/U-box superfamily protein	[more]

BLAST of Csa3G104940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201108\|gb\|KGN56241.1\|	6.3e-53	100.00	hypothetical protein Csa_3G104940 [Cucumis sativus]	[more]
gi\|778688398\|ref\|XP_011652743.1\|	1.8e-39	95.06	PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus]	[more]
gi\|659102865\|ref\|XP_008452355.1\|	8.3e-37	88.75	PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo]	[more]
gi\|567919746\|ref\|XP_006451879.1\|	4.6e-11	47.37	hypothetical protein CICLE_v10010182mg [Citrus clementina]	[more]
gi\|641843578\|gb\|KDO62477.1\|	6.0e-11	47.37	hypothetical protein CISIN_1g035583mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G104940.1	Csa3G104940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 40..81 score: 6.5
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 41..82 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 41..83 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 39..81 score: 1.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 40..81 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G104940	Cla011789	Watermelon (97103) v1	cuwmB226
Csa3G104940	Lsi05G007520	Bottle gourd (USVL1VR-Ls)	culsiB217
Csa3G104940	Cla97C10G190790	Watermelon (97103) v2	cuwmbB181
Csa3G104940	Bhi11G000654	Wax gourd	cuwgoB228
Csa3G104940	Cucsa.074760	Cucumber (Gy14) v1	cgycuB071
Csa3G104940	CmaCh16G007800	Cucurbita maxima (Rimu)	cmacuB328
Csa3G104940	CmoCh16G008430	Cucurbita moschata (Rifu)	cmocuB318
Csa3G104940	Cp4.1LG01g08560	Cucurbita pepo (Zucchini)	cpecuB393
Csa3G104940	Carg21078	Silver-seed gourd	carcuB0504
Csa3G104940	Carg00022	Silver-seed gourd	carcuB0684

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G104940	Wax gourd	cuwgoB244
Csa3G104940	Cucurbita maxima (Rimu)	cmacuB702
Csa3G104940	Cucurbita moschata (Rifu)	cmocuB693
Csa3G104940	Melon (DHL92) v3.5.1	cumeB244
Csa3G104940	Watermelon (Charleston Gray)	cuwcgB189
Csa3G104940	Cucurbita pepo (Zucchini)	cpecuB215
Csa3G104940	Bottle gourd (USVL1VR-Ls)	culsiB198
Csa3G104940	Cucumber (Gy14) v2	cgybcuB109
Csa3G104940	Melon (DHL92) v3.6.1	cumedB225