Cp4.1LG01g08560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g08560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG01 : 4897829 .. 4899954 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCTCAAGCCCTCACTACTGTTCCACAATCCAACCCTCCACCTTCAGCCCTCCCGTTCCTCACCGCGTTCTCGATCGTCATCGTCATCATCATCTCCATCGTCATCTTCTCCATCCTCGCCTCCTTTTCCATCATCATATTCATCTTCGTCTTATGTCAATACCTAATCGGGTCGACGAACTTAGATGGACACCATCTCGACGTCGAAGCAGGCGAGAGAAACCAAAACCAAAACCAAAACCAAAACCAAACCATGCGGGGTAGAAGTTTGGTATCTCGATACGAAAGCAACATTTGGAGGGAGGCTTTGGAGAGAACAATGGCGGAGAGGAAGGGGCGTAGAGCACAAATTGTAATGAAAATGGCAACGAGGGTGAGGTATGGCAGCTCGGAGGTGGCGCCGAAATACACCGCTTGTGCAATATGTTTGGAGGAGTTTGAGAATGGCGAGGATTGCCAGATTTTTGTGGTGTGTAAACACATTTTTCATTACTCTTGTATCCAACGTTGGCTTAGGAGGAACATGACTTGTCCTATTTGTCGTTCTCCTATTGCCAATCACAACAACTGCTGACATTTCTCATTATCCACATTTAATGTAAATATTTCAAACCATTGTTCACAATAGTGTTTATAAAATAGAGTTTTTCTATGCAAACTTCCATATCAAATAATTTTACCATGCCTTTAATTTCTCCTTCGAGTTATAATATTTTAATTAGTTGAATTACGTGAATATAATCATGAGTCGATCTTGAGACTGAACCTAATTTATTTCCCGAATCGTACTCGATGTAACTCAAGTTCATAACTCTGTGAACGAAACCCTTAAAAAAATCCAGCCCAAATCATCTTAGAATACATACAAATTTGAAATCGAATTTTCTATAAGAGATTTGAGTATTTAACGTTCTTTTAGGTTGCAAAATACTCGTATCCTAAAGCTAAGGATAGGAAGACGTACCCCTTTTTCGATCGTTGGTGACTATTGAATGATTTATATATATCTCTGCCTGTATATTAAATTTCAAAACTAATGATATGACATTTTAAAAGACATTGCAAATATCACAATTTAAATATTAATTAACTATATTCTTACTATTTCACTAATTAACTTATAAAATCATCATAATAAATCATAGAATATCTTGATTAACTCTCATTGGGTTGAAAATTACTTTTTCAAATAATTAAAAATTTATTTTAAAGTGATATTAGAAAATAAGTAATAAAAAAATAATTATAAAATTAAATAAATATACGTATGTATAATTTAAAATGGAATTTAGTTCAAGTCAATCTAGTTTTAGAAAAACACCTAAACCAATTCAATTTATAAAATTTTCTTTTATTTGAATTCAACTCAATCGAAATCAATCCAATCCAAATAAGTTGGTGATTCGATCAAAAAATATTATTGGAATATTCTTAAAATGGGTTTAATAGTTGTTCATGTTATTGTTAGCTTAACAAAGAAACTTCCAAATAGAAAAATAAAAAAAAATTGGAAACAACAGAGTTTGTTATATGCCATCTCAGTTATTATTGAAACTCAATTTCTTGTTATGTTACTAAAAACCAAATCAAATAAGTCGTGATTGTGAGCCATGATTGTTCATCAACGCCTCATTTTCTCGTCCCATTTTCCTTAATTTTCCCAGCATCCAAACAACACCACAGATGCCCATAATCGTGCTCTTTGGGTTTGTCCTGACAGTTCTTGTGTTATTCTCCTTCTTCAGCTTGTGCATTTACATCTGTTTCCAATGCCACACTCAGGGCTTCATAGGCGCCACCCAAACCCACCGTGACAATGGACACGGCATGGCGACGAGAGCGGCGACCAGGGTGGCCACCGTGAACCCTGAGGAATTGAATCATCAGATTCATAGGGCGATGGAGAAACTGACGATGCCATTGGTAGATTATGGTTGCAAGGAGAATGATGGGGAAGTGGCGGGGTCGGAGTTGAACGAATGTGCGATATGCTTGGAGGCGTTTGGGAACAGAGTTTCGTGCAGAGTTTTCCCTAATTGCAAGCATATGTTCCATACGCATTGCATTATAAAATGGTTGGGGATTAATCTAACTTGTCCCATTTGTCGAACCCACTTGTAA

mRNA sequence

ATGATCCCTCAAGCCCTCACTACTGTTCCACAATCCAACCCTCCACCTTCAGCCCTCCCGTTCCTCACCGCGTTCTCGATCGTCATCGTCATCATCATCTCCATCGTCATCTTCTCCATCCTCGCCTCCTTTTCCATCATCATATTCATCTTCGTCTTATGTCAATACCTAATCGGGTCGACGAACTTAGATGGACACCATCTCGACGTCGAAGCAGGCGAGAGAAACCAAAACCAAAACCAAAACCAAAACCAAACCATGCGGGGTAGAAGTTTGGTATCTCGATACGAAAGCAACATTTGGAGGGAGGCTTTGGAGAGAACAATGGCGGAGAGGAAGGGGCGTAGAGCACAAATTGTAATGAAAATGGCAACGAGGGTGAGGTATGGCAGCTCGGAGGTGGCGCCGAAATACACCGCTTGTGCAATATGTTTGGAGGAGTTTGAGAATGGCGAGGATTGCCAGATTTTTGTGGGCTTCATAGGCGCCACCCAAACCCACCGTGACAATGGACACGGCATGGCGACGAGAGCGGCGACCAGGGTGGCCACCGTGAACCCTGAGGAATTGAATCATCAGATTCATAGGGCGATGGAGAAACTGACGATGCCATTGGTAGATTATGGTTGCAAGGAGAATGATGGGGAAGTGGCGGGGTCGGAGTTGAACGAATGTGCGATATGCTTGGAGGCGTTTGGGAACAGAGTTTCGTGCAGAGTTTTCCCTAATTGCAAGCATATGTTCCATACGCATTGCATTATAAAATGGTTGGGGATTAATCTAACTTGTCCCATTTGTCGAACCCACTTGTAA

Coding sequence (CDS)

ATGATCCCTCAAGCCCTCACTACTGTTCCACAATCCAACCCTCCACCTTCAGCCCTCCCGTTCCTCACCGCGTTCTCGATCGTCATCGTCATCATCATCTCCATCGTCATCTTCTCCATCCTCGCCTCCTTTTCCATCATCATATTCATCTTCGTCTTATGTCAATACCTAATCGGGTCGACGAACTTAGATGGACACCATCTCGACGTCGAAGCAGGCGAGAGAAACCAAAACCAAAACCAAAACCAAAACCAAACCATGCGGGGTAGAAGTTTGGTATCTCGATACGAAAGCAACATTTGGAGGGAGGCTTTGGAGAGAACAATGGCGGAGAGGAAGGGGCGTAGAGCACAAATTGTAATGAAAATGGCAACGAGGGTGAGGTATGGCAGCTCGGAGGTGGCGCCGAAATACACCGCTTGTGCAATATGTTTGGAGGAGTTTGAGAATGGCGAGGATTGCCAGATTTTTGTGGGCTTCATAGGCGCCACCCAAACCCACCGTGACAATGGACACGGCATGGCGACGAGAGCGGCGACCAGGGTGGCCACCGTGAACCCTGAGGAATTGAATCATCAGATTCATAGGGCGATGGAGAAACTGACGATGCCATTGGTAGATTATGGTTGCAAGGAGAATGATGGGGAAGTGGCGGGGTCGGAGTTGAACGAATGTGCGATATGCTTGGAGGCGTTTGGGAACAGAGTTTCGTGCAGAGTTTTCCCTAATTGCAAGCATATGTTCCATACGCATTGCATTATAAAATGGTTGGGGATTAATCTAACTTGTCCCATTTGTCGAACCCACTTGTAA

Protein sequence

MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGSTNLDGHHLDVEAGERNQNQNQNQNQTMRGRSLVSRYESNIWREALERTMAERKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIFVGFIGATQTHRDNGHGMATRAATRVATVNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL
Homology
[Close]
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match: ATL19_ARATH (Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-10
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 205 LVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCP 264
           LV  G  E D E +  E  ECAICL  +     CRVFP C+H++H  CI  WL  +LTCP
Sbjct: 111 LVGQGNHEEDEEKS-LESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCP 170

Query: 265 ICRTHL 271
            CR  L
Sbjct: 171 TCRKDL 175

[Close]
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match: ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-09
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 224 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           ECAICL  F +  + R+ P C H+FH HCI  WL  ++TCP+CRT+L
Sbjct: 123 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL 169

[Close]
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-09
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 

Query: 224 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           ECAICL  F +  + R+ P C H+FH HCI  WL  ++TCP+CR +L
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173

[Close]
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match: ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-09
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 216 EVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRT 269
           +VAG+   ECA+CL     + + R+ PNCKH+FH  C+  WL    TCP+CRT
Sbjct: 94  DVAGT---ECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRT 143

[Close]
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match: ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 6.8e-09
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 

Query: 224 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           EC++CL  F +  S RV PNCKH FH HCI  W   + +CP+CR+ +
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121

[Close]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match: E5GBS2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-36
Identity = 97/166 (58.43%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI ISI+IFS++ASF+IIIFI+++C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LD H  D+EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIF 158
                  ++ K+A  V YGSSEV  K   CAICLE+FENGE CQ F
Sbjct: 121 -------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNF 156

[Close]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match: A0A0A0L6M6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 95/166 (57.23%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI I+I+IFS++ASF+II+ I+V+C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LDGH  ++EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIF 158
                  ++ K+A  V YGSSE A K   CAICLE+FENGE CQ F
Sbjct: 121 -------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNF 156

[Close]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match: A0A0A0L7Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 1 

Query: 185 VNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNC 244
           + P E N Q+  AMEKLT P   Y C+END   + S L+EC ICLE  G RVSCRVFPNC
Sbjct: 3   LQPGERNRQLQMAMEKLTKPSAYYNCEENDE--SPSTLSECTICLEDLGERVSCRVFPNC 62

Query: 245 KHMFHTHCIIKWLGINLTCPI 266
           KH+FHTHCII WL IN TCPI
Sbjct: 63  KHIFHTHCIINWLEINQTCPI 81

[Close]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match: V4WEW6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010182mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1 

Query: 189 ELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMF 248
           E   Q   A+EKL +PLV YG   + GE+  S   +C+ICL+ + +   CRVFP CKH+F
Sbjct: 82  ERREQRQEALEKL-LPLVKYGSSSSSGEIL-SNFGDCSICLDDYRDGEFCRVFPVCKHIF 141

Query: 249 HTHCIIKWLGINLTCPICRTHL 271
           H  CI  WL   LTCPICR  L
Sbjct: 142 HVKCIDHWLNNQLTCPICRKSL 161

[Close]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match: A0A067FG84_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035583mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 189 ELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMF 248
           E   Q   A+EKL +PLV YG   +  E+  S   +C+ICL+ + +   CRVFP CKH+F
Sbjct: 75  ERREQRQEALEKL-LPLVKYGSSSSSREIL-SNFGDCSICLDDYRDGEFCRVFPVCKHIF 134

Query: 249 HTHCIIKWLGINLTCPICRTHL 271
           H  CI  WL   LTCPICR  L
Sbjct: 135 HVKCIDHWLNNQLTCPICRKSL 154

[Close]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match: AT1G53010.1 (AT1G53010.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-11
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1 

Query: 205 LVDYGCKENDGEVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCP 264
           LV  G  E D E +  E  ECAICL  +     CRVFP C+H++H  CI  WL  +LTCP
Sbjct: 111 LVGQGNHEEDEEKS-LESRECAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCP 170

Query: 265 ICRTHL 271
            CR  L
Sbjct: 171 TCRKDL 175

[Close]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match: AT5G27420.1 (AT5G27420.1 carbon/nitrogen insensitive 1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1 

Query: 224 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           ECAICL  F +  + R+ P C H+FH HCI  WL  ++TCP+CRT+L
Sbjct: 123 ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL 169

[Close]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match: AT3G05200.1 (AT3G05200.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-10
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 

Query: 224 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           ECAICL  F +  + R+ P C H+FH HCI  WL  ++TCP+CR +L
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173

[Close]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match: AT2G42350.1 (AT2G42350.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 216 EVAGSELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRT 269
           +VAG+   ECA+CL     + + R+ PNCKH+FH  C+  WL    TCP+CRT
Sbjct: 94  DVAGT---ECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRT 143

[Close]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-10
Identity = 34/105 (32.38%), Postives = 51/105 (48.57%), Query Frame = 1 

Query: 163 ATQTHRDNGHGMATRAATRVATVNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSEL 222
           +++T   N +G    ++T+  + N + LN       E +   +  Y  K  DG V GS  
Sbjct: 90  SSETLNLNHNGEGFFSSTQRISTNGDGLN-------ESMIKSITVYKYKSGDGFVDGS-- 149

Query: 223 NECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICR 268
            +C++CL  F    S R+ P C H FH  CI  WL  +  CP+CR
Sbjct: 150 -DCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184

[Close]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match: gi|778688398|ref|XP_011652743.1| (PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.6e-72
Identity = 162/282 (57.45%), Postives = 193/282 (68.44%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI I+I+IFS++ASF+II+ I+V+C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LDGH  ++EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIFVGFIGATQTHRDNG 180
                  ++ K+A  V YGSSE A K   CAICLE+FENGE CQ F GF  + Q  R N 
Sbjct: 121 -------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPGFSESEQ--RGNR 180

Query: 181 HGMATRAATRVAT---VNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAIC 240
           +   T   T VAT    +PEE N Q+  AMEKLT P   Y C+END   + S L+EC IC
Sbjct: 181 NEEMTMTTTTVATTMVADPEERNRQLQMAMEKLTKPSAYYNCEEND--ESPSTLSECTIC 240

Query: 241 LEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           LE  G RVSCRVFPNCKH+FHTHCII WL IN TCPICRT L
Sbjct: 241 LEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPICRTKL 268

[Close]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match: gi|659102863|ref|XP_008452354.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 97/166 (58.43%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI ISI+IFS++ASF+IIIFI+++C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LD H  D+EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIF 158
                  ++ K+A  V YGSSEV  K   CAICLE+FENGE CQ F
Sbjct: 121 -------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNF 156

[Close]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match: gi|307136064|gb|ADN33914.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 97/166 (58.43%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI ISI+IFS++ASF+IIIFI+++C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LD H  D+EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIF 158
                  ++ K+A  V YGSSEV  K   CAICLE+FENGE CQ F
Sbjct: 121 -------MIEKVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNF 156

[Close]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match: gi|700201109|gb|KGN56242.1| (hypothetical protein Csa_3G104950 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 95/166 (57.23%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 1   MIPQALTTVPQSNPPPSALPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60
           MIPQALT VPQSNPPPS LPFLTAFSIVIVI I+I+IFS++ASF+II+ I+V+C+YLIGS
Sbjct: 1   MIPQALT-VPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGS 60

Query: 61  TNLDGHHLDVEAGERNQNQNQ---------NQNQTMRGRSLVSRYESNIWREALERTMAE 120
           T+LDGH  ++EAGE N+NQ           +   +  GR ++ R ESN WRE +ERT+  
Sbjct: 61  TSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI-- 120

Query: 121 RKGRRAQIVMKMATRVRYGSSEVAPKYTACAICLEEFENGEDCQIF 158
                  ++ K+A  V YGSSE A K   CAICLE+FENGE CQ F
Sbjct: 121 -------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNF 156

[Close]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match: gi|659102865|ref|XP_008452355.1| (PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 63/111 (56.76%), Postives = 73/111 (65.77%), Query Frame = 1 

Query: 162 GATQTHRDNGHGMATRAATRVAT--VNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAG 221
           G+++  R       T   TRV T  V+PEE N QI  AMEKLT P   Y C+EN+   + 
Sbjct: 41  GSSEDERRGNRNGETTTTTRVPTTMVDPEERNRQIQMAMEKLTKPSAYYDCEENNESPST 100

Query: 222 SELNECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICRTHL 271
           S  +EC ICLE  G +VSCRVFPNCKH+FHTHCII WL IN TCPICRT L
Sbjct: 101 S--SECTICLEDLGEKVSCRVFPNCKHIFHTHCIINWLEINQTCPICRTQL 149

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g08560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL19_ARATH6.1e-1048.48Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana GN=ATL19 PE=3 SV=1[more]
ATL31_ARATH3.0e-0953.19E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2[more]
ATL6_ARATH4.0e-0951.06E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2[more]
ATL40_ARATH5.2e-0947.17RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1[more]
ATL17_ARATH6.8e-0948.94RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2[more]
BLAST of Cp4.1LG01g08560 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBS2_CUCME3.5e-3658.43Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L6M6_CUCSA6.5e-3557.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1[more]
A0A0A0L7Y8_CUCSA2.8e-2264.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1[more]
V4WEW6_9ROSI3.2e-1348.78Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010182mg PE=4 SV=1[more]
A0A067FG84_CITSI2.7e-1247.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035583mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g08560 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53010.13.4e-1148.48 RING/U-box superfamily protein[more]
AT5G27420.11.7e-1053.19 carbon/nitrogen insensitive 1[more]
AT3G05200.12.2e-1051.06 RING/U-box superfamily protein[more]
AT2G42350.12.9e-1047.17 RING/U-box superfamily protein[more]
AT5G17600.15.0e-1032.38 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG01g08560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688398|ref|XP_011652743.1|5.6e-7257.45PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus][more]
gi|659102863|ref|XP_008452354.1|5.0e-3658.43PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo][more]
gi|307136064|gb|ADN33914.1|5.0e-3658.43hypothetical protein [Cucumis melo subsp. melo][more]
gi|700201109|gb|KGN56242.1|9.4e-3557.23hypothetical protein Csa_3G104950 [Cucumis sativus][more]
gi|659102865|ref|XP_008452355.1|3.6e-2656.76PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g08560.1Cp4.1LG01g08560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 223..267
score: 1.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 225..266
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 225..267
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 222..269
score: 1.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 10..67
score: 4.3E-21coord: 180..268
score: 4.3
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 224..270
score: 3.28