CsGy3G006270 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G006270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING finger protein 44
Location	Chr3 : 5296591 .. 5297157 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGCAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

mRNA sequence

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGCAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

Coding sequence (CDS)

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGCAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

Protein sequence

MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVND

Homology

[Close]

BLAST of CsGy3G006270 vs. NCBI nr
Match: KGN56242.1 (hypothetical protein Csa_3G104950 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-83
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60
           MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVND 189
           CRCSIVND
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of CsGy3G006270 vs. NCBI nr
Match: XP_011652743.1 (PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 5.5e-62
Identity = 173/268 (64.55%), Postives = 176/268 (65.67%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60
           MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQN------------------------- 180
           KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQN                         
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPGFSESEQRGNRNXXXXXXXXXXX 180

Query: 181 ----------------------------------------------------------FP 186
                                                                     FP
Sbjct: 181 XXXXXDPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFP 240

[Close]

BLAST of CsGy3G006270 vs. NCBI nr
Match: ADN33914.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53
Identity = 135/158 (85.44%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60
           MIPQALTVPQSNPPPSILPFL          XXXXXXXXXXXXXXXXXXXXX KYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFXXXXXXXXXXXXXXXXXXXXXXKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of CsGy3G006270 vs. NCBI nr
Match: XP_008226770.1 (PREDICTED: putative RING-H2 finger protein ATL19 [Prunus mume])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 99  DIMERSESNAWREDMERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 158
           + +E       + D E+ + I K+  P++YGS E   KC DC IC+EDFE  +LCQ FP 
Sbjct: 142 EALEERRDQRHQRDREQLLEI-KLPPPIAYGSHEIEMKCKDCVICMEDFETDQLCQVFPS 201

Query: 159 CNHIFHYSCIQHWLKKNMTCPICRCSIVN 188
           CNH FH  C+  WLKK++TCPICR S+++
Sbjct: 202 CNHTFHSKCMNTWLKKSLTCPICRNSVLD 229

[Close]

BLAST of CsGy3G006270 vs. NCBI nr
Match: POF19795.1 (ring-h2 finger protein atl72 [Quercus suber])

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-17
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 114 ERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLK 173
           E+   +EK+   V+YGS E A+ C  C ICLEDF+NG+ CQ FP CNH+FH +CI +WLK
Sbjct: 116 EKQQALEKLPPLVNYGSKEIASACTVCVICLEDFKNGQSCQVFPSCNHVFHSNCIGYWLK 175

Query: 174 KNMTCPICRCSIV 187
           K+ TCPICR  ++
Sbjct: 176 KSPTCPICRVPVM 188

[Close]

BLAST of CsGy3G006270 vs. TAIR10
Match: AT5G01880.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 128 YGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  +  P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of CsGy3G006270 vs. TAIR10
Match: AT3G18930.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 133 AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           +A  C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of CsGy3G006270 vs. TAIR10
Match: AT4G40070.1 (RING/U-box superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 122 VAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPIC 181
           V A  S   S+  +K ++CAICL + E+ E  +  P+CNH+FH  CI  WL  + TCP+C
Sbjct: 106 VFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVC 165

Query: 182 RCSI 186
           R ++
Sbjct: 166 RSNL 169

[Close]

BLAST of CsGy3G006270 vs. TAIR10
Match: AT2G35910.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 126 VSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCS 185
           + Y  ++  T    CAICL D++   L +  P CNH+FH  CI  WL+ N TCP+CR S
Sbjct: 133 ILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTS 191

[Close]

BLAST of CsGy3G006270 vs. TAIR10
Match: AT2G18670.1 (RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           K + P +Y   E+     DC +C + F  G+ C+N P C H+FH  C+  WL K  TCPI
Sbjct: 96  KFSEPSTYTRYES-----DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPI 155

Query: 181 CRCSI 186
           CR  +
Sbjct: 156 CRARV 155

[Close]

BLAST of CsGy3G006270 vs. Swiss-Prot
Match: sp|Q9LZV8|ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-10
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 128 YGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  +  P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of CsGy3G006270 vs. Swiss-Prot
Match: sp|Q8W571|ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 122 VAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPIC 181
           V A  S   S+  +K ++CAICL + E+ E  +  P+CNH+FH  CI  WL  + TCP+C
Sbjct: 106 VFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVC 165

Query: 182 RCSI 186
           R ++
Sbjct: 166 RSNL 169

[Close]

BLAST of CsGy3G006270 vs. Swiss-Prot
Match: sp|Q67YI6|ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 133 AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           +A  C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of CsGy3G006270 vs. Swiss-Prot
Match: sp|Q8RX29|ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 126 VSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCS 185
           + Y  ++  T    CAICL D++   L +  P CNH+FH  CI  WL+ N TCP+CR S
Sbjct: 133 ILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTS 191

[Close]

BLAST of CsGy3G006270 vs. Swiss-Prot
Match: sp|Q9ZV51|ATL56_ARATH (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           K + P +Y   E+     DC +C + F  G+ C+N P C H+FH  C+  WL K  TCPI
Sbjct: 96  KFSEPSTYTRYES-----DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPI 155

Query: 181 CRCSI 186
           CR  +
Sbjct: 156 CRARV 155

[Close]

BLAST of CsGy3G006270 vs. TrEMBL
Match: tr|A0A0A0L6M6|A0A0A0L6M6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 7.5e-84
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60
           MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVND 189
           CRCSIVND
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of CsGy3G006270 vs. TrEMBL
Match: tr|E5GBS2|E5GBS2_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.4e-53
Identity = 135/158 (85.44%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCKYLIGST 60
           MIPQALTVPQSNPPPSILPFL          XXXXXXXXXXXXXXXXXXXXX KYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFXXXXXXXXXXXXXXXXXXXXXXKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of CsGy3G006270 vs. TrEMBL
Match: tr|A0A2P4MQJ2|A0A2P4MQJ2_QUESU (Ring-h2 finger protein atl72 OS=Quercus suber OX=58331 GN=CFP56_24792 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.0e-17
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 114 ERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLK 173
           E+   +EK+   V+YGS E A+ C  C ICLEDF+NG+ CQ FP CNH+FH +CI +WLK
Sbjct: 116 EKQQALEKLPPLVNYGSKEIASACTVCVICLEDFKNGQSCQVFPSCNHVFHSNCIGYWLK 175

Query: 174 KNMTCPICRCSIV 187
           K+ TCPICR  ++
Sbjct: 176 KSPTCPICRVPVM 188

[Close]

BLAST of CsGy3G006270 vs. TrEMBL
Match: tr|M5WWP2|M5WWP2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015864mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 100 IMERSESNAWREDMERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVC 159
           ++E       + D E+ ++  K+  P++YGS E    C DC IC+EDFE  +LCQ FP C
Sbjct: 1   VLEERRDQRHQRDREQ-LLENKLPPPIAYGSHEIEMNCKDCVICMEDFETDQLCQVFPSC 60

Query: 160 NHIFHYSCIQHWLKKNMTCPICRCSIVN 188
           NH FH  C+  WLKK++TCPICR S+++
Sbjct: 61  NHTFHSKCMNTWLKKSLTCPICRNSVLD 87

[Close]

BLAST of CsGy3G006270 vs. TrEMBL
Match: tr|A0A251PMJ1|A0A251PMJ1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G182700 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 117 IMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNM 176
           ++  K+  P++YGS E    C DC IC+EDFE  +LCQ FP CNH FH  C+  WLKK++
Sbjct: 159 LLENKLPPPIAYGSHEIEMNCKDCVICMEDFETDQLCQVFPSCNHTFHSKCMNTWLKKSL 218

Query: 177 TCPICRCSIVN 188
           TCPICR S+++
Sbjct: 219 TCPICRNSVLD 229

The following BLAST results are available for this feature:

BLAST of CsGy3G006270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56242.1	1.1e-83	100.00	hypothetical protein Csa_3G104950 [Cucumis sativus]	[more]
XP_011652743.1	5.5e-62	64.55	PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus]	[more]
ADN33914.1	2.1e-53	85.44	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_008226770.1	3.1e-17	47.19	PREDICTED: putative RING-H2 finger protein ATL19 [Prunus mume]	[more]
POF19795.1	9.1e-17	54.79	ring-h2 finger protein atl72 [Quercus suber]	[more]

BLAST of CsGy3G006270 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01880.1	1.1e-11	47.46	RING/U-box superfamily protein	[more]
AT3G18930.1	1.4e-11	44.44	RING/U-box superfamily protein	[more]
AT4G40070.1	1.4e-11	42.19	RING/U-box superfamily protein	[more]
AT2G35910.1	1.8e-11	44.07	RING/U-box superfamily protein	[more]
AT2G18670.1	2.4e-11	40.00	RING/U-box superfamily protein	[more]

BLAST of CsGy3G006270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZV8\|ATL74_ARATH	1.9e-10	47.46	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
sp\|Q8W571\|ATL32_ARATH	2.5e-10	42.19	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
sp\|Q67YI6\|ATL65_ARATH	2.5e-10	44.44	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
sp\|Q8RX29\|ATL70_ARATH	3.3e-10	44.07	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
sp\|Q9ZV51\|ATL56_ARATH	4.3e-10	40.00	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]

BLAST of CsGy3G006270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L6M6\|A0A0A0L6M6_CUCSA	7.5e-84	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1	[more]
tr\|E5GBS2\|E5GBS2_CUCME	1.4e-53	85.44	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A2P4MQJ2\|A0A2P4MQJ2_QUESU	6.0e-17	54.79	Ring-h2 finger protein atl72 OS=Quercus suber OX=58331 GN=CFP56_24792 PE=4 SV=1	[more]
tr\|M5WWP2\|M5WWP2_PRUPE	1.0e-16	45.45	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015864m...	[more]
tr\|A0A251PMJ1\|A0A251PMJ1_PRUPE	2.3e-16	52.11	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G182700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G006270.1	CsGy3G006270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 140..181 e-value: 6.3E-6 score: 35.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 139..182 e-value: 2.2E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 140..182 score: 12.858
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 91..187 e-value: 3.7E-18 score: 67.0
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 92..184
None	No IPR available	PANTHER	PTHR14155:SF441	SUBFAMILY NOT NAMED	coord: 92..184
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 139..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G006270	Cla011789	Watermelon (97103) v1	cgybwmB211
CsGy3G006270	Csa3G104950	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G006270	MELO3C016514	Melon (DHL92) v3.5.1	cgybmeB211
CsGy3G006270	ClCG10G006930	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G006270	CSPI03G06170	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G006270	CmaCh04G009040	Cucurbita maxima (Rimu)	cgybcmaB416
CsGy3G006270	CmaCh16G007800	Cucurbita maxima (Rimu)	cgybcmaB341
CsGy3G006270	CmoCh16G008430	Cucurbita moschata (Rifu)	cgybcmoB313
CsGy3G006270	Lsi05G007520	Bottle gourd (USVL1VR-Ls)	cgyblsiB203
CsGy3G006270	Cp4.1LG01g08560	Cucurbita pepo (Zucchini)	cgybcpeB369
CsGy3G006270	Cp4.1LG14g00270	Cucurbita pepo (Zucchini)	cgybcpeB328
CsGy3G006270	MELO3C016514.2	Melon (DHL92) v3.6.1	cgybmedB203
CsGy3G006270	CsaV3_3G006300	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G006270	Cla97C10G190800	Watermelon (97103) v2	cgybwmbB174
CsGy3G006270	Bhi11G000655	Wax gourd	cgybwgoB219
CsGy3G006270	Carg21078	Silver-seed gourd	carcgybB0481
CsGy3G006270	Carg00022	Silver-seed gourd	carcgybB0659

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G006270	Cucurbita moschata (Rifu)	cgybcmoB393
CsGy3G006270	Bottle gourd (USVL1VR-Ls)	cgyblsiB183
CsGy3G006270	Wax gourd	cgybwgoB234