CmoCh16G008430 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G008430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr16 : 4449883 .. 4452517 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCAGTGTGTAATCATATTTTTCATTATTGTTGTATTCAACGTTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGTTGTTCTATTGAGTGACAAGTGCTGAGATTTGTATATATTTCAAACTTTTCATCCCATTGTTTCTAAAAATATATTAGTTTTTTCGAGTTTCTTTTCCACATTTCGAGTCGATGAATTGAAATTGGTTTGATTCGGGGTCGGTCGATCAACGATCCCAATAAGAGTTAAAACTCACCAAATCGATTGATTCTATTTACAGTTAACTATGCATGCAAGTCTCACAACCATATCAGAAAAGAATAAGTTTTAATTCTATTGGAGCAGGTAGTATAATGCATGTTTCTCAATGGACAAAGTAACGGATCGAGAGAGAAGTATTGTGATGTGACCAAGTGAGACGCTCAATGAGGATCAGGTGGGGTACGAGCCACAACCTTGAAAGTGAAAATTGAAGAAAAGGTGTTGCAACCAATAGAATCAAGAGGACAACGTTGAGATGCTGCTAACAACGTCTCGACACTCAAAATGCACCAAACAAGCCACATGACCAAAGACAATAGAATCGAAATGCTGCTCGAGTATGAAGATCTGAGGGATATTTGTATGATTCAATAATCCGACCAATTCAAACCACCCAACTTTGGATATATATTTTTTCAATTTAGGTTAGGTTGAATTTTTAGGTCCGTTTACGAGTTGATATTTTTTTGGTCAAGTCAACTTGACCAATTCGAGAATAGGGTTACAATCCAACTCAACCCAACCTTACCTTACTTTTTAAGATTATTATGAAGATTAAAAATATTTTACGTTTGTAATCAATGTTAGTGATACCTTGACTTATAAATATTTGATATTTGAATTTTATGAAATTTTAGTTATTAATGTAACATGTACGAGAGATAAAGTAATTTTTTTTAAATAATTAAAAAAAATTACAACCCGACAACTCAACTCGAGAAAAGAGGATTGGATTAGATTGGTTTATGAATTTTATTCGTATTATATTCACTAATTACATTAATTACATATGTTTTTTTTAGAGAAATAATCATAACTTCTAGCTTTCTCACGTCCTTATAAAAGTATTACCGTTGACGGGTTTCAAACAGAGACACCAACACCTTTTGGTAACACCCGATATTTTGAATTTTTTTAACCTTTCTTACCCCTTTTACTCGAAATCACATCTCCAACTTCCGTTAAGCTCACCCTTACTTCTCCTCGAAAATATGATGAACGTATCGAGCATTGTAATTTCATTAGTTAGCCCGACTTTAAATTAATCCAAGTTTTTGTTCCAAACTTACGAGAGCGTGTATGACAAACACCCAATCATATAATCGATACAGGTTATTGTTCTACAGGTACTTTACTCCCAAATTTATCGTTAATTACATGCAAATCAGACAAATTAATCTTTTTCAAATTTCGATGATAACAAGATTTAATTTCATACGTAACAAAAATCTTAAAACGGGTTTAACGTTTGTTCTTGTCGTTAGCTTTACAGATATAGTTTCTAAAACAAACGGGAAATTGTTACGAAACTAAAATCTTTTTATTTTTTTATATCAACAAAAATCACAAAAAAAAAAAAATGAAAAAGAAGAAGAACCATCAACCATGATTCTTCTTCATTTTCTCACCTCATTTTCCTTCATTTTCCCAGCATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

mRNA sequence

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCACATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

Coding sequence (CDS)

ATGATCCCTCCACCTCTTAACCCTCCTCCTTCAATCCTCCCCTTCCTCACCTCCTTTTCGATCATAATCCTCATCTTCGTCTCCATTATCATCTTCTCCGTCCTCGCCTCCTTTGCCATCATCGTCCTCGTCTACTTCATTTGCAGATACCTAGTTCACCCAACTTATTTAGACGAACACGACCCTGTGCTCGTAGCGGATGAGAGAAACCAAAACCAAAGTCAGAGCACACGAACTAGGATTTTGGTATCTCATCCAACACGTCATGGTGGAGATGTAGAGAATGCATCATGGAGGGAGGGTTTGGAGAGGAAGGGGCTGAGAGAACAAGCTCTAGAGAAGACGACGACGGTGCTCGTGAGCTATGGCAGCTCGGAAGCGACCGCGAAATTCGTTGATTGTGCAATCTGTTTGGAGGATTTTGAAAAGGGAGAGCTTTGCCAGATTTTTCCACATCCAAACAGCACAAGATCTGAGCTAATTAACAAACCAATACTCTTTCCCCTCCAAATTCTCATGCACATAATCGTCATCTTTGGCTTGTTCTTGATCATTCTTGTAATCCTCACCTTCTTCGCCTTGTGCCTTTACATTTGCTTCCAATGCTATAACCACGGCTTTCCCGAAGATGATTCAATCATCACTGAAAGTGGAGAATCGACGACGACCACGACGAGGGCGACATCGGTGGCGGTGGATTCCGATGAGATAAATCGCCATATTCAAATTGCGATGGAGAAATTGACGAAGCCATCGACGGAGTATGATTACGAGAAGGATAACGAAGCCGTGTCGGTGTTGAGTCAATGTGCTATATGTTTGGAAGAGTTCGAAAATACGGATTTGTGCCGTGTTTTTCCTAATTGCAAACATATGTTTCATACGCATTGCATAGTCCGTTGGTTAGGGATTAATCAAACTTGTCCGGTATGTCGGACTCAATTGTAG

Homology

[Close]

BLAST of CmoCh16G008430 vs. Swiss-Prot
Match: ATL17_ARATH (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-10
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 269 QCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           +C++CL EF++ +  RV PNCKH FH HCI  W   + +CP+CR+Q+
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121

[Close]

BLAST of CmoCh16G008430 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-10
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 270 CAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           CA+CL EF +TD  R+ P C H FH HCI  WL  N TCP+CR  L
Sbjct: 207 CAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252

[Close]

BLAST of CmoCh16G008430 vs. Swiss-Prot
Match: ATL40_ARATH (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.3e-10
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 268 SQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQ 315
           ++CA+CL   E  D  R+ PNCKH+FH  C+  WL    TCPVCRT+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144

[Close]

BLAST of CmoCh16G008430 vs. Swiss-Prot
Match: ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 45/135 (33.33%), Postives = 64/135 (47.41%), Query Frame = 1


Query: 183 LIILVILTFFALCLYICFQCY-NHGFPEDDSIITESGESTTTTTRATSV-AVDSDEINRH 242
           + ++V++   AL     F  Y  H     D  +T +G +    T AT    +D++ I   
Sbjct: 45  MAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIE-- 104

Query: 243 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 302
                   T P+  Y   K  +      +CAICL EFE+ +  R+ P C H+FH HCI  
Sbjct: 105 --------TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGA 164

Query: 303 WLGINQTCPVCRTQL 316
           WL  + TCPVCRT L
Sbjct: 165 WLQGHVTCPVCRTNL 169

[Close]

BLAST of CmoCh16G008430 vs. Swiss-Prot
Match: ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-09
Identity = 44/135 (32.59%), Postives = 57/135 (42.22%), Query Frame = 1


Query: 181 LFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRH 240
           +  +++  L F  L   +C++  N       S   E G      TR TS  +  D IN  
Sbjct: 49  IIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSF 108

Query: 241 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 300
                     PS  Y   K  +      +CAICL EFE+ +  R+ P C H FH  CI  
Sbjct: 109 ----------PSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDV 168

Query: 301 WLGINQTCPVCRTQL 316
           WL    TCPVCR  L
Sbjct: 169 WLSSRSTCPVCRASL 173

[Close]

BLAST of CmoCh16G008430 vs. TrEMBL
Match: E5GBS2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.9e-35
Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTR 158
             VSYGSSE  AK +DCAICLEDFE GELCQ FP P   R
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFPLPPRRR 163

[Close]

BLAST of CmoCh16G008430 vs. TrEMBL
Match: A0A0A0L6M6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 88/154 (57.14%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF++IIIFSV+ASFAIIV +Y IC+YL+  T LD H   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSN 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ   TR+RIL++H   + HG D+    E+ +WRE +ER  + E+       
Sbjct: 69  LEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSEA  K +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEAATKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. TrEMBL
Match: A0A0A0L7Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.7e-21
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 1


Query: 236 EINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHT 295
           E NR +Q+AMEKLTKPS  Y+ E+++E+ S LS+C ICLE+      CRVFPNCKH+FHT
Sbjct: 7   ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHT 66

Query: 296 HCIVRWLGINQTCPV 311
           HCI+ WL INQTCP+
Sbjct: 67  HCIINWLEINQTCPI 81

[Close]

BLAST of CmoCh16G008430 vs. TrEMBL
Match: A0A067G872_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045986mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 239 RHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCI 298
           RH Q  +EKL  P+ +YD    N+  +  S+C ICLEEF + DL R+ P CKH++H+HCI
Sbjct: 72  RH-QRVIEKLP-PAEKYDGHLHNKKFT--SECVICLEEFVSGDLFRILPFCKHVYHSHCI 131

Query: 299 VRWLGINQTCPVCRTQL 316
           +RW     TCP+CR+ +
Sbjct: 132 IRWFSDEFTCPICRSSI 144

[Close]

BLAST of CmoCh16G008430 vs. TrEMBL
Match: V4U966_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017586mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 239 RHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCI 298
           RH Q  +EKL  P+ +YD    N+  +  S+C ICLEEF + DL R+ P CKH++H+HCI
Sbjct: 20  RH-QRVIEKLL-PAEKYDGHLHNKKFT--SECVICLEEFVSGDLFRILPFCKHVYHSHCI 79

Query: 299 VRWLGINQTCPVCRTQL 316
           +RW     TCP+CR+ +
Sbjct: 80  IRWFSDEFTCPICRSSI 92

[Close]

BLAST of CmoCh16G008430 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-11
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 270 CAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           CA+CL EF +TD  R+ P C H FH HCI  WL  N TCP+CR  L
Sbjct: 207 CAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252

[Close]

BLAST of CmoCh16G008430 vs. TAIR10
Match: AT2G42350.1 (AT2G42350.1 RING/U-box superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-11
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 268 SQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQ 315
           ++CA+CL   E  D  R+ PNCKH+FH  C+  WL    TCPVCRT+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144

[Close]

BLAST of CmoCh16G008430 vs. TAIR10
Match: AT5G27420.1 (AT5G27420.1 carbon/nitrogen insensitive 1)

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 45/135 (33.33%), Postives = 64/135 (47.41%), Query Frame = 1


Query: 183 LIILVILTFFALCLYICFQCY-NHGFPEDDSIITESGESTTTTTRATSV-AVDSDEINRH 242
           + ++V++   AL     F  Y  H     D  +T +G +    T AT    +D++ I   
Sbjct: 45  MAVVVVVVIAALFFMGFFTVYIRHCTGAVDGSVTPAGGARRRVTNATVARGLDAETIE-- 104

Query: 243 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 302
                   T P+  Y   K  +      +CAICL EFE+ +  R+ P C H+FH HCI  
Sbjct: 105 --------TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGA 164

Query: 303 WLGINQTCPVCRTQL 316
           WL  + TCPVCRT L
Sbjct: 165 WLQGHVTCPVCRTNL 169

[Close]

BLAST of CmoCh16G008430 vs. TAIR10
Match: AT1G35330.1 (AT1G35330.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 44/135 (32.59%), Postives = 57/135 (42.22%), Query Frame = 1


Query: 181 LFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAVDSDEINRH 240
           +  +++  L F  L   +C++  N       S   E G      TR TS  +  D IN  
Sbjct: 49  IIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSF 108

Query: 241 IQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVR 300
                     PS  Y   K  +      +CAICL EFE+ +  R+ P C H FH  CI  
Sbjct: 109 ----------PSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDV 168

Query: 301 WLGINQTCPVCRTQL 316
           WL    TCPVCR  L
Sbjct: 169 WLSSRSTCPVCRASL 173

[Close]

BLAST of CmoCh16G008430 vs. TAIR10
Match: AT5G43420.1 (AT5G43420.1 RING/U-box superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 258 EKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCRTQL 316
           E + E      +C++CL EF++ +  R+ PNC H+FH  CI  WL  N  CP+CRT++
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: gi|659102865|ref|XP_008452355.1| (PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 5.6e-39
Identity = 88/145 (60.69%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 172 LMHIIVIFGLFLIILVILTFFALCLYICFQCYNH-GFPEDDSIITESGESTTTTTRATSV 231
           LM I+VIFG FL I V ++F  LCLYIC+QC  H G  ED+     +GE TTTTTR  + 
Sbjct: 6   LMPIVVIFGFFLTIFVFISFIGLCLYICYQCCCHRGSSEDERRGNRNGE-TTTTTRVPTT 65

Query: 232 AVDSDEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCK 291
            VD +E NR IQ+AMEKLTKPS  YD E++NE+ S  S+C ICLE+      CRVFPNCK
Sbjct: 66  MVDPEERNRQIQMAMEKLTKPSAYYDCEENNESPSTSSECTICLEDLGEKVSCRVFPNCK 125

Query: 292 HMFHTHCIVRWLGINQTCPVCRTQL 316
           H+FHTHCI+ WL INQTCP+CRTQL
Sbjct: 126 HIFHTHCIINWLEINQTCPICRTQL 149

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: gi|307136064|gb|ADN33914.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 91/160 (56.88%), Postives = 112/160 (70.00%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFPHPNSTR 158
             VSYGSSE  AK +DCAICLEDFE GELCQ FP P   R
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFPLPPRRR 163

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: gi|659102863|ref|XP_008452354.1| (PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 9.2e-34
Identity = 89/154 (57.79%), Postives = 110/154 (71.43%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF+SIIIFSV+ASFAII+ +Y IC+YL+  T LDEH   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGSTSLDEHVSD 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ    R+RIL++H   + HG D+    E+ +WREG+ER  + E+       
Sbjct: 69  LEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSE  AK +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEVVAKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: gi|778688398|ref|XP_011652743.1| (PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 88/154 (57.14%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF++IIIFSV+ASFAIIV +Y IC+YL+  T LD H   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSN 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ   TR+RIL++H   + HG D+    E+ +WRE +ER  + E+       
Sbjct: 69  LEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSEA  K +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEAATKCIDCAICLEDFENGELCQNFP 157

[Close]

BLAST of CmoCh16G008430 vs. NCBI nr
Match: gi|700201109|gb|KGN56242.1| (hypothetical protein Csa_3G104950 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 88/154 (57.14%), Postives = 109/154 (70.78%), Query Frame = 1


Query: 4   PPLNPPPSILPFLTSFSIIILIFVSIIIFSVLASFAIIVLVYFICRYLVHPTYLDEHDPV 63
           P  NPPPSILPFLT+FSI+I+IF++IIIFSV+ASFAIIV +Y IC+YL+  T LD H   
Sbjct: 9   PQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSN 68

Query: 64  LVADERNQNQSQSTRTRILVSH--PTRHGGDV----ENASWREGLERKGLREQALEKTTT 123
           L A E N+NQ   TR+RIL++H   + HG D+    E+ +WRE +ER  + E+       
Sbjct: 69  LEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEK-----VA 128

Query: 124 VLVSYGSSEATAKFVDCAICLEDFEKGELCQIFP 152
             VSYGSSEA  K +DCAICLEDFE GELCQ FP
Sbjct: 129 APVSYGSSEAATKCIDCAICLEDFENGELCQNFP 157

The following BLAST results are available for this feature:

BLAST of CmoCh16G008430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL17_ARATH	4.2e-10	48.94	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2 SV=2	[more]
ATL48_ARATH	5.5e-10	56.52	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2	[more]
ATL40_ARATH	9.3e-10	51.06	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1	[more]
ATL31_ARATH	1.2e-09	33.33	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2	[more]
ATL34_ARATH	2.1e-09	32.59	RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1	[more]

BLAST of CmoCh16G008430 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBS2_CUCME	9.9e-35	56.88	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0L6M6_CUCSA	1.2e-32	57.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104950 PE=4 SV=1	[more]
A0A0A0L7Y8_CUCSA	3.7e-21	62.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104940 PE=4 SV=1	[more]
A0A067G872_CITSI	4.5e-11	46.75	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045986mg PE=4 S...	[more]
V4U966_9ROSI	4.5e-11	46.75	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017586mg PE=...	[more]

BLAST of CmoCh16G008430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48030.1	3.1e-11	56.52	hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin...	[more]
AT2G42350.1	5.2e-11	51.06	RING/U-box superfamily protein	[more]
AT5G27420.1	6.8e-11	33.33	carbon/nitrogen insensitive 1	[more]
AT1G35330.1	1.2e-10	32.59	RING/U-box superfamily protein	[more]
AT5G43420.1	1.5e-10	41.38	RING/U-box superfamily protein	[more]

BLAST of CmoCh16G008430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102865\|ref\|XP_008452355.1\|	5.6e-39	60.69	PREDICTED: putative RING-H2 finger protein ATL19, partial [Cucumis melo]	[more]
gi\|307136064\|gb\|ADN33914.1\|	1.4e-34	56.88	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659102863\|ref\|XP_008452354.1\|	9.2e-34	57.79	PREDICTED: putative RING-H2 finger protein ATL19 [Cucumis melo]	[more]
gi\|778688398\|ref\|XP_011652743.1\|	1.7e-32	57.14	PREDICTED: uncharacterized protein LOC105435076 [Cucumis sativus]	[more]
gi\|700201109\|gb\|KGN56242.1\|	1.7e-32	57.14	hypothetical protein Csa_3G104950 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008430.1	CmoCh16G008430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 269..312 score: 8.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 270..311 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 270..312 score: 13
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 269..315 score: 5.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 175..212 score: 1.6E-22coord: 232..315 score: 1.6
None	No IPR available	PANTHER	PTHR14155:SF138	GH10160P	coord: 175..212 score: 1.6E-22coord: 232..315 score: 1.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 269..315 score: 6.45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G008430	Cucsa.074760	Cucumber (Gy14) v1	cgycmoB0117
CmoCh16G008430	CmaCh16G007800	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G008430	CmaCh04G009040	Cucurbita maxima (Rimu)	cmacmoB700
CmoCh16G008430	Cla011789	Watermelon (97103) v1	cmowmB303
CmoCh16G008430	Csa3G104940	Cucumber (Chinese Long) v2	cmocuB318
CmoCh16G008430	MELO3C016514	Melon (DHL92) v3.5.1	cmomeB285
CmoCh16G008430	ClCG10G006930	Watermelon (Charleston Gray)	cmowcgB278
CmoCh16G008430	CSPI03G06170	Wild cucumber (PI 183967)	cmocpiB326
CmoCh16G008430	Lsi05G007520	Bottle gourd (USVL1VR-Ls)	cmolsiB302
CmoCh16G008430	Cp4.1LG14g00270	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G008430	Cp4.1LG01g08560	Cucurbita pepo (Zucchini)	cmocpeB312
CmoCh16G008430	MELO3C016514.2	Melon (DHL92) v3.6.1	cmomedB333
CmoCh16G008430	CsaV3_3G006300	Cucumber (Chinese Long) v3	cmocucB0380
CmoCh16G008430	Cla97C10G190790	Watermelon (97103) v2	cmowmbB322
CmoCh16G008430	Bhi11G000654	Wax gourd	cmowgoB0418
CmoCh16G008430	CsGy3G006270	Cucumber (Gy14) v2	cgybcmoB313
CmoCh16G008430	Carg00022	Silver-seed gourd	carcmoB0920
CmoCh16G008430	Carg21078	Silver-seed gourd	carcmoB0642

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G008430	Wax gourd	cmowgoB0410
CmoCh16G008430	Wax gourd	cmowgoB0421
CmoCh16G008430	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh16G008430	Bottle gourd (USVL1VR-Ls)	cmolsiB305