Lsi04G018820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G018820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	chr04 : 25944734 .. 25946675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGATAAAAATATAGAAATTGAAGTGGCTATAAATGCACGATGGAAATTAAAATTCGAAAAGCCAACCGAAAAATTAAAAAAATCACAGCCTCCAAAATCAAGTTCCTCTCCACGTTCCAGTAATGAAGACCAGAAGCCATAGATTTTTCACTTGAAAACGATCAAATCATGGCCTCGAATTTCATTGTTGGATTTCATTGCCCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCAGAATAAATCGCCGCCTTTGAAGTTTCATTGTCGTAACTCATCTTCTTCGAGAAAATCCGCCGTTTCTGAGGGCGCCGAGGGTAGAGTTAAAGAGGAGGAACTTCTTATTTCATCTTCTTCTGGTATGCATTAATTCACTGCTTTTGTTTCTTTAATGCGTGTTTTTCTGATTTGTTCTTTCTATTATCTTACTGCCTTTGTTTCGTCTCTTTGCTGCTTGTTTATTTGTTCCTTCAAATTTGTTAGTGGTTTGATTCTTGGTTCTCTAATCCTATAGTTTATATTCCTCTACAATTGAAGAATCCTATTTGCTAATCTGAACGATTGGGGTTTTAAATTCTTTTTGAGAATATATTATTAAGGGAATGGACATTATGGACTGCTTTTTGATATGGAAGGGGATCTAATTCCAATCCAAGTGGCCTATTTATACAAATATAAAAAAGTAATGATCATCTTGTTTTCCTTAGTTAAATACATTTCTAGTTTCTAGGCTTTGACATAGCATGATTCCGTTTCCAATTTAGTTCCGATGCTTTTATAAATTTCATTATCATTCTGTTATTTTAATATCCCATGTAGGTAGTCACCATAAGATTTGAACCCATTTCTCAAAAGTTATCATCGTTCCCTATTATTCGAGTAAATGTTATCAAACATTTATTATAAGCAAGGAATAAACAAACCTAATTATTATTTGTGGTTTCATTTAAAAAGGAATAACAAAACTTCAATGGACAATGTCCATGAAGAAGGGTCTATTGTCCTCCAAAACAACATTAGTCGTACCAATTTTTATACTTTTCAATCAAAATGATGCATTAAAGTCTATCTGAAATTTTTATCTTCAATCAATGTTATGTAACACACTCTCACATAATTAAAACAAACAACTTGCTATATGGGATTTCTGTTATTCTTCAGTCTTCACATATATGGTAATCTTTAAGCAAGAATAAGGACGAAATATGAAAGTTATAGAAGTATAGAAATCAAATTGAAACTAAGGTTGAACAATGAGACTAAAAGTGTAGTTTAACATAGTCGTTTTAATTTTATTTTTTATTTTTTACATAGTAATTTAAGATTATCATTATTTTTTCTTCCAACTGTGTAGGATCATCTTCTTCTGCACGCACACAACTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAATTAGTTGATGGTAAGTGAGCTGACTCTCTCCTCTAAACAAGGAAACGAAATGGGATGGCATAGAATTGCATTGGCTTTCTTTCATTGAACTTGAAAGAGATTACTTCACTCGAACTTGCTGAAATTTTATGTTCTCAGGTTATGAAAGTGATGGCAGTTACCAGGGAATTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGATGACGACTTTATCGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTGAATGAAGTATCTCAGAGGAACGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTGGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGATATACAGTTTATACATACATCGTATATATAGAAGTGATAATCTCTTGATACTGAAGATTCATTGCC

mRNA sequence

TTTCGATAAAAATATAGAAATTGAAGTGGCTATAAATGCACGATGGAAATTAAAATTCGAAAAGCCAACCGAAAAATTAAAAAAATCACAGCCTCCAAAATCAAGTTCCTCTCCACGTTCCAGTAATGAAGACCAGAAGCCATAGATTTTTCACTTGAAAACGATCAAATCATGGCCTCGAATTTCATTGTTGGATTTCATTGCCCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCAGAATAAATCGCCGCCTTTGAAGTTTCATTGTCGTAACTCATCTTCTTCGAGAAAATCCGCCGTTTCTGAGGGCGCCGAGGGTAGAGTTAAAGAGGAGGAACTTCTTATTTCATCTTCTTCTGGATCATCTTCTTCTGCACGCACACAACTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAATTAGTTGATGGTTATGAAAGTGATGGCAGTTACCAGGGAATTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGATGACGACTTTATCGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTGAATGAAGTATCTCAGAGGAACGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTGGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGATATACAGTTTATACATACATCGTATATATAGAAGTGATAATCTCTTGATACTGAAGATTCATTGCC

Coding sequence (CDS)

ATGGCCTCGAATTTCATTGTTGGATTTCATTGCCCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCAGAATAAATCGCCGCCTTTGAAGTTTCATTGTCGTAACTCATCTTCTTCGAGAAAATCCGCCGTTTCTGAGGGCGCCGAGGGTAGAGTTAAAGAGGAGGAACTTCTTATTTCATCTTCTTCTGGATCATCTTCTTCTGCACGCACACAACTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAATTAGTTGATGGTTATGAAAGTGATGGCAGTTACCAGGGAATTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGATGACGACTTTATCGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTGAATGAAGTATCTCAGAGGAACGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTGGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGA

Protein sequence

MASNFIVGFHCPNPHFSSSSSSSSSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYQGITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP

Homology

[Close]

BLAST of Lsi04G018820 vs. TrEMBL
Match: A0A0A0L2V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 5.1e-82
Identity = 175/193 (90.67%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSSSSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAEGRV 60
           MASNFI+GFHC NPHF   SSSSSSSSNLL NKS P KFH R SSSSRK AVSE AEGRV
Sbjct: 1   MASNFIIGFHCSNPHF---SSSSSSSSNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRV 60

Query: 61  KEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYQGITIRDQLAQLFRDRD 120
            EEE LISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSY   TIRDQLAQLFRDRD
Sbjct: 61  NEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRD 120

Query: 121 DDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180
           DDF VPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL
Sbjct: 121 DDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180

Query: 181 GIAILTGYVQLFP 194
           GIAILTGYVQLFP
Sbjct: 181 GIAILTGYVQLFP 190

[Close]

BLAST of Lsi04G018820 vs. TrEMBL
Match: W9SD73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 8.2e-48
Identity = 129/197 (65.48%), Postives = 143/197 (72.59%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSS---SSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAE 60
           MA NF     CPN + SSSS           L ++ SP       +SSS +  A SEG E
Sbjct: 1   MALNFRATSLCPNSYSSSSSPPPFVIPKHKQLFKSSSPS-----SSSSSFKTLAQSEGTE 60

Query: 61  GRVKEEELLISSSSGSSSSARTQLDLLEQLSS-GSQLVDGYESDGSYQGITIRDQLAQLF 120
             VKE++   S S   SSSAR QLDLLEQLSS  S   DGYES+GS + +TIRDQLAQL 
Sbjct: 61  RVVKEQDPPASFSG--SSSARAQLDLLEQLSSTSSSSADGYESEGSSRKLTIRDQLAQLV 120

Query: 121 RDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPP 180
            DRD DF +PLGKNLKKVSAKFLTISQKRNI+RQAYLN+VSQRNDSVFFATVGAFVILPP
Sbjct: 121 ADRDGDFSLPLGKNLKKVSAKFLTISQKRNIRRQAYLNQVSQRNDSVFFATVGAFVILPP 180

Query: 181 IVILGIAILTGYVQLFP 194
           +VILGIAILTGYVQLFP
Sbjct: 181 LVILGIAILTGYVQLFP 190

[Close]

BLAST of Lsi04G018820 vs. TrEMBL
Match: E0CU30_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00520 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 114/156 (73.08%), Postives = 129/156 (82.69%), Query Frame = 1


Query: 41  CRNSSSSRKSAVSEGAEGR--VKEEELLISSSSGSSSSARTQLDLLEQLSSGS-QLVDGY 100
           C +SS  R SA S G EGR   +E+  L ++ S S SSAR+QLDLLEQL+S +  L  GY
Sbjct: 35  CSSSSCFRTSAQSGGTEGRGVTQEDPPLPAALSESPSSARSQLDLLEQLTSTTPSLEGGY 94

Query: 101 ESDGSYQGITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVS 160
           ESDG  + +TIRDQLAQL  +RDDDFI+PLGKNLKKVS KFLTISQKRNIKRQAYLNEVS
Sbjct: 95  ESDGMSRNLTIRDQLAQLVGERDDDFIIPLGKNLKKVSPKFLTISQKRNIKRQAYLNEVS 154

Query: 161 QRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 194
           QRNDSVFFAT+GAFVILPPI+ILGIAI+TGYVQLFP
Sbjct: 155 QRNDSVFFATIGAFVILPPIIILGIAIITGYVQLFP 190

[Close]

BLAST of Lsi04G018820 vs. TrEMBL
Match: V4SRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-47
Identity = 108/153 (70.59%), Postives = 127/153 (83.01%), Query Frame = 1


Query: 41  CRNSSSSRKSAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESD 100
           C+  + S++     G  G V EE+   +S SGSSSSA+TQLDLLEQL+S S  ++GYESD
Sbjct: 29  CKTFAQSQRIGAEGG--GGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESD 88

Query: 101 GSYQGITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRN 160
           GS + +TIRDQLAQL  DRDD+F +PLGKNLKKVS KFLTISQKRNI+RQAYLN+VSQRN
Sbjct: 89  GSSRKLTIRDQLAQLIGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNKVSQRN 148

Query: 161 DSVFFATVGAFVILPPIVILGIAILTGYVQLFP 194
           DSVFFAT+GAFVILPP +ILGIA+LTGYVQLFP
Sbjct: 149 DSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179

[Close]

BLAST of Lsi04G018820 vs. TrEMBL
Match: M1BGE7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017304 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.3e-47
Identity = 112/149 (75.17%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 45  SSSRKSAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYQ 104
           SS R++A+SE  +GRV +EE L  + SGS SSARTQLDLLEQL+S S  V+GYESD S  
Sbjct: 25  SSIRRAALSEQGDGRVTKEEDL-PTYSGSLSSARTQLDLLEQLTSSSSAVNGYESDSSSG 84

Query: 105 GITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVF 164
             TIRDQLA L   RDDDF +PLGKNLKK SAKFLT SQKRNIKRQAYLNEVSQRNDS F
Sbjct: 85  KPTIRDQLANLVGSRDDDFSIPLGKNLKKFSAKFLTTSQKRNIKRQAYLNEVSQRNDSTF 144

Query: 165 FATVGAFVILPPIVILGIAILTGYVQLFP 194
           FAT+GAFVILPP+VILGIAI TGYVQLFP
Sbjct: 145 FATIGAFVILPPLVILGIAIATGYVQLFP 172

[Close]

BLAST of Lsi04G018820 vs. TAIR10
Match: AT2G42975.1 (AT2G42975.1 unknown protein)

HSP 1 Score: 181.4 bits (459), Expect = 5.2e-46
Identity = 123/194 (63.40%), Postives = 134/194 (69.07%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSSSSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAEGRV 60
           MA NF      P  + SSSS S  S   LLQ  SPP     R  S   +  V++      
Sbjct: 1   MALNFFSTSLHPISNPSSSSRSKQSHHLLLQLSSPPAT---RVRSERSEIGVTDDNNNNN 60

Query: 61  KEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGS-YQGITIRDQLAQLFRDR 120
                  S SS SSSS RTQLDLLEQL+S S   DGY SDG   +G+TIRDQLA L  DR
Sbjct: 61  DTSSSSFSGSS-SSSSVRTQLDLLEQLTSTS---DGYLSDGGGSRGLTIRDQLAGLVGDR 120

Query: 121 DDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVI 180
           DDDF +PLGKNLKKVS KFLTISQKRNIKRQ+YLNEVSQRNDSVFFAT+GAFVILPP+VI
Sbjct: 121 DDDFSIPLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVI 180

Query: 181 LGIAILTGYVQLFP 194
           L IAILTGYVQLFP
Sbjct: 181 LAIAILTGYVQLFP 187

[Close]

BLAST of Lsi04G018820 vs. NCBI nr
Match: gi|778695333|ref|XP_004144634.2| (PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 7.3e-82
Identity = 175/193 (90.67%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSSSSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAEGRV 60
           MASNFI+GFHC NPHF   SSSSSSSSNLL NKS P KFH R SSSSRK AVSE AEGRV
Sbjct: 1   MASNFIIGFHCSNPHF---SSSSSSSSNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRV 60

Query: 61  KEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYQGITIRDQLAQLFRDRD 120
            EEE LISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSY   TIRDQLAQLFRDRD
Sbjct: 61  NEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRD 120

Query: 121 DDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180
           DDF VPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL
Sbjct: 121 DDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180

Query: 181 GIAILTGYVQLFP 194
           GIAILTGYVQLFP
Sbjct: 181 GIAILTGYVQLFP 190

[Close]

BLAST of Lsi04G018820 vs. NCBI nr
Match: gi|659130963|ref|XP_008465443.1| (PREDICTED: vitellogenin-1 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 3.1e-80
Identity = 174/193 (90.16%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSSSSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAEGRV 60
           MASNFI+GFHC NP F   SSSSSSSSNLL +KS PLKFH R SSSSRK AVSE AEGRV
Sbjct: 1   MASNFIIGFHCSNPPF---SSSSSSSSNLLLSKSLPLKFHSRCSSSSRKFAVSESAEGRV 60

Query: 61  KEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYQGITIRDQLAQLFRDRD 120
            EEE LISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSY   TIRDQLAQLFRDRD
Sbjct: 61  NEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRD 120

Query: 121 DDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180
           DDF VPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL
Sbjct: 121 DDFSVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVIL 180

Query: 181 GIAILTGYVQLFP 194
           GIAILTGYVQLFP
Sbjct: 181 GIAILTGYVQLFP 190

[Close]

BLAST of Lsi04G018820 vs. NCBI nr
Match: gi|698486942|ref|XP_009790166.1| (PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris])

HSP 1 Score: 202.2 bits (513), Expect = 8.1e-49
Identity = 118/165 (71.52%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 32  NKSPPLKFHCRN---SSSSRKSAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLS 91
           +K+ PLK +      SSS R++A+SE  +G V EEEL   + SGS SSARTQLDLL+QL+
Sbjct: 23  HKNDPLKLYQSQTLLSSSLRRAALSEERDGNVTEEEL--PTYSGSLSSARTQLDLLDQLT 82

Query: 92  SGSQLVDGYESDGSYQGITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIK 151
           S S  V+GYESD S    TIR QLA+L  DRDDDF +PLGKNLKKVSAKFLT+SQKRNIK
Sbjct: 83  SSSSAVNGYESDSSSSKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIK 142

Query: 152 RQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 194
           RQAYLNEVSQRNDSVFFAT+GAFVILPP+VILGIAI TGYVQLFP
Sbjct: 143 RQAYLNEVSQRNDSVFFATIGAFVILPPLVILGIAIATGYVQLFP 185

[Close]

BLAST of Lsi04G018820 vs. NCBI nr
Match: gi|747100050|ref|XP_011098096.1| (PREDICTED: uncharacterized protein LOC105176857 [Sesamum indicum])

HSP 1 Score: 198.7 bits (504), Expect = 9.0e-48
Identity = 113/157 (71.97%), Postives = 130/157 (82.80%), Query Frame = 1


Query: 37  LKFHCRNSSSSRKSAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQLVDG 96
           LK    + S  + +A+SEG E RV EE+    + SGSSSSAR QLDLLEQL+SGS   DG
Sbjct: 29  LKLETPSPSCLKTAALSEGTESRVTEEDP--PTYSGSSSSARMQLDLLEQLTSGSSSDDG 88

Query: 97  YESDGSYQGITIRDQLAQLFRDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEV 156
           YESDG+Y+  TIR+QLA L  DRDDDF +PLGKNLKKV+AKFLTISQKRNI+RQAYLNEV
Sbjct: 89  YESDGTYRP-TIREQLANLVPDRDDDFSIPLGKNLKKVTAKFLTISQKRNIRRQAYLNEV 148

Query: 157 SQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 194
           S+RNDSVFFAT+GAFV+LPP+VILGIAI TGYVQLFP
Sbjct: 149 SKRNDSVFFATIGAFVLLPPLVILGIAIATGYVQLFP 182

[Close]

BLAST of Lsi04G018820 vs. NCBI nr
Match: gi|703163742|ref|XP_010113427.1| (hypothetical protein L484_026761 [Morus notabilis])

HSP 1 Score: 198.4 bits (503), Expect = 1.2e-47
Identity = 129/197 (65.48%), Postives = 143/197 (72.59%), Query Frame = 1


Query: 1   MASNFIVGFHCPNPHFSSSSSSS---SSSSNLLQNKSPPLKFHCRNSSSSRKSAVSEGAE 60
           MA NF     CPN + SSSS           L ++ SP       +SSS +  A SEG E
Sbjct: 1   MALNFRATSLCPNSYSSSSSPPPFVIPKHKQLFKSSSPS-----SSSSSFKTLAQSEGTE 60

Query: 61  GRVKEEELLISSSSGSSSSARTQLDLLEQLSS-GSQLVDGYESDGSYQGITIRDQLAQLF 120
             VKE++   S S   SSSAR QLDLLEQLSS  S   DGYES+GS + +TIRDQLAQL 
Sbjct: 61  RVVKEQDPPASFSG--SSSARAQLDLLEQLSSTSSSSADGYESEGSSRKLTIRDQLAQLV 120

Query: 121 RDRDDDFIVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPP 180
            DRD DF +PLGKNLKKVSAKFLTISQKRNI+RQAYLN+VSQRNDSVFFATVGAFVILPP
Sbjct: 121 ADRDGDFSLPLGKNLKKVSAKFLTISQKRNIRRQAYLNQVSQRNDSVFFATVGAFVILPP 180

Query: 181 IVILGIAILTGYVQLFP 194
           +VILGIAILTGYVQLFP
Sbjct: 181 LVILGIAILTGYVQLFP 190

The following BLAST results are available for this feature:

BLAST of Lsi04G018820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G018820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2V6_CUCSA	5.1e-82	90.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1	[more]
W9SD73_9ROSA	8.2e-48	65.48	Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1	[more]
E0CU30_VITVI	1.4e-47	73.08	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00520 PE=4 SV=...	[more]
V4SRD9_9ROSI	2.4e-47	70.59	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1	[more]
M1BGE7_SOLTU	5.3e-47	75.17	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017304 PE=4 SV=1	[more]

BLAST of Lsi04G018820 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42975.1	5.2e-46	63.40	unknown protein	[more]

BLAST of Lsi04G018820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695333\|ref\|XP_004144634.2\|	7.3e-82	90.67	PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus]	[more]
gi\|659130963\|ref\|XP_008465443.1\|	3.1e-80	90.16	PREDICTED: vitellogenin-1 [Cucumis melo]	[more]
gi\|698486942\|ref\|XP_009790166.1\|	8.1e-49	71.52	PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris]	[more]
gi\|747100050\|ref\|XP_011098096.1\|	9.0e-48	71.97	PREDICTED: uncharacterized protein LOC105176857 [Sesamum indicum]	[more]
gi\|703163742\|ref\|XP_010113427.1\|	1.2e-47	65.48	hypothetical protein L484_026761 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G018820.1	Lsi04G018820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36742	FAMILY NOT NAMED	coord: 2..193 score: 3.8
None	No IPR available	PANTHER	PTHR36742:SF1	SUBFAMILY NOT NAMED	coord: 2..193 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G018820	Csa4G608080	Cucumber (Chinese Long) v2	culsiB283
Lsi04G018820	CSPI04G21590	Wild cucumber (PI 183967)	cpilsiB283
Lsi04G018820	Cucsa.058880	Cucumber (Gy14) v1	cgylsiB047
Lsi04G018820	CmaCh09G007310	Cucurbita maxima (Rimu)	cmalsiB025
Lsi04G018820	CmaCh01G013090	Cucurbita maxima (Rimu)	cmalsiB427
Lsi04G018820	CmoCh01G013660	Cucurbita moschata (Rifu)	cmolsiB415
Lsi04G018820	CmoCh09G007240	Cucurbita moschata (Rifu)	cmolsiB013
Lsi04G018820	Cla023232	Watermelon (97103) v1	lsiwmB333
Lsi04G018820	MELO3C026968	Melon (DHL92) v3.5.1	lsimeB318
Lsi04G018820	ClCG11G016470	Watermelon (Charleston Gray)	lsiwcgB259
Lsi04G018820	MELO3C026968.2	Melon (DHL92) v3.6.1	lsimedB334
Lsi04G018820	Cla97C11G222390	Watermelon (97103) v2	lsiwmbB266
Lsi04G018820	Bhi09G003012	Wax gourd	lsiwgoB402
Lsi04G018820	Cp4.1LG06g05850	Cucurbita pepo (Zucchini)	cpelsiB639
Lsi04G018820	Cp4.1LG02g02480	Cucurbita pepo (Zucchini)	cpelsiB465
Lsi04G018820	CsGy4G020110	Cucumber (Gy14) v2	cgyblsiB263
Lsi04G018820	Carg14783	Silver-seed gourd	carlsiB285
Lsi04G018820	CsaV3_4G031920	Cucumber (Chinese Long) v3	cuclsiB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G018820	Cucurbita pepo (Zucchini)	cpelsiB458
Lsi04G018820	Melon (DHL92) v3.6.1	lsimedB340
Lsi04G018820	Silver-seed gourd	carlsiB954