Cp4.1LG06g05850 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g05850
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTRNA-methyltransferase
LocationCp4.1LG06 : 3498449 .. 3504401 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCCTCGTTGTGTTCATCTTCTTCGAGAAAACTGGCTGTTTCTGAGGGCGCGGAGGGTAGAGTTAAAGAGGAGGAACTTCTCATTTCGTCTTCATCTGGTATGCATTAATTCACTGCTTTTGTTTCGTTGATGCGTATTTTCTTGCTGTTCTTTCTATTTGTTTCTTCAAAATTGTGATTCGTTTGATTCTTAGCTCTGTAATCGATCCTATAGTTTAATTACCTATACAATGGAAGAATCCTATTCGTAAATCTGAACGATTGAGATTTTAAATTCTTTTGAGAATATATTATTAAGGGAATGGACATTATGGACTCCTTTTTTTGATATGGAAGGGGATCCAATTCCAATTCAAGTGCCTTATCTATACAAATATAATAAAGTAAAGATTATCTTGTTTTTCCTGGCTAAATACGTTTCTAGTTTCTATGCTTCGACATAGCATGATTCCATTTCCAAATTTAGTTCTAATGCCTTTAGAAATTTCATGAGGAATCAAATTTTAACAATTTCATAAGGACGAAATATGATAATTTTAGAAGTAACGGAATCAAATTCAAATAAGGTTAAAGCATGAGAAGTCAAAAGTGTAGTTTAACCTGCTTGTTTTAAAGATTTCACGGAGCAATTAAAGATTATCATTATTTTTCTTTTCAACTGTATAGGATCATCTTCTTCTGCACGTACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAATTGATGGTAAGTGAGCTGATTCTCTCTTCTAACAAGCAAACAAAATGGCAATGAAATAGAATGACATCAGCCCTCTTTCATTGAAAGAGATCATCCCCATTTCACTTGAACTTACTGAGATTTTATGTTATCAGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCACGGTTGTTCAGAGACAGATATGACGATTTTAACGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAATGAAATATCTCAAAGGAACGATTCAGTTTTCTTTGCTACAGTTGAAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGTAGGGCTAACTTTTTCCATGATATACAGTTTATACAAACATCATATTTATAGAAGTGATTATCTCATGATATTGAAGATTCATTGCCCATTGTTTTCATCTTAATTTTCAACTTGAGTTCTATATTTCTGGAAAAGTATGAATGTAATAGCCCAAGCCCACCACTAGCAGATATTGTTTGTTTTTGGCCCGTTATGTATTGCCGTCAGTTTCACTGTTTTAAAACGCATCTTCTATAGAGAGGGTCTAGCCCTACTCCGACCAGTGCCTCGTACCGTCTGGTGACTGGCTCTGATATCATTTGTAACAACTCAAGCACACTACTAACATATATTGTCTACTTTAGCCCGTTACGTATCATCGTCAGCTTCACGATTTTAAAACGCGCATGTTAGGGAGAGGTTCCACACCCTTATAAGGAATATTTCGTGCCCCTCTCCAACCGACGTGGGATCTCAAAATTTTGAAAATAATGTTAGATAATTTCTTATGTTTACCAACTATCAGATGACAGTATCTTTCTTTTTTAAAAAAAACCAGATGACAGTATCTTCTTTTTATTCTTCAAAAACTCTGTATTCATTAGGTTCAAATCTGTGATAGAAAACAGAAAAACCACATCAGAAAATATCTCCTGCAAGCCCAGATCTCATCTCTTACAAAATACCACTCTTTCCCTATACAAATCCCAATAAGAGGAGAGATATGAGTAAGAAGAATGACAACAATCTCATGTTAGTGAAAGCAAGCTTCTGACAAATCTATTTACTCCTTCAGCAAGGATCAGTAGTCAGCTCCTTTTGCTTGTCATTTGGAGAGAGCACTTGATCGGTAGGTGTTACCAAATCATTCCCCAAAATAACTCCTTGCTTTTGTATATACTCCAGTTTGTCTTGGAATAGGTAAAAGAATGAAATCAAAGAAATTTCAACAGTGAAAATTATAGTCCAAATTCGTATACTTCGAGATGTTTTCTCATGGTAAGCAAATAATCCTGAATATACATTGAATACTCCTAGGAGAGATACTGCAGTGCCCAGCATCCAATGTATAAAAAACCATAGGCTTCTTGTGTTAGAGCCCCTGCAAGAGAGATAGAAAAGAGAGAATTCAGCATATAGAAGTCAATACAAAAGTTGACTTTGGAGTAAGGAAACTTTGTTTGTTTTTTCTAATCGTTTCTTTTAACAAAAGATCAGTAGAAACATGGTTGTTGAATATCTGTGACAAAAATTGTTTTTCCGAGTCTGTTCTTGGTTGGCCTATTCTTACAACAACCAATACTCTTCATCCTTCAAAAATTGTTGGCTCGCATGTATAATAACACAAACATTTATAAGCTGCCCAATCATATTCTTAGAAATGTTTCGAATATAGAACAGGACATATTGCCTTATATCTGATGAAGTATGAAATTTTACCTCTTTGGCCTTACAATTCCAATCAACGCCTGTAACCAGATCATCCCATATAGGCCAATCCCTATCCTTTGGTGACTATTATTGAAAGCATTGTTGAATTTCTTGATAGACATGACTGCTCCTGCTGTGACTAGTAATACAGAGAGTATCTGTTGAACAGAATCAAGTGAAGATCATATAATGACTGTATTAACTTATTTTAGAATGGAAAATACTAGCATTGTGATCACAAATCACAGTTCTTTTTTGGAATGAGATCCATCAAAGTGGACCCCATCTATGTGGTTGAAGGATGATCAAAATCCTTCAACTTCATATTTTTATATCCTTTTTGACTTTTTAGAGCTAAAACTCACCTAACTCCTATATTATAATCCATAAACCTGCTAGATTTCAACAATATGGATATTTGGCTATGAGTTTCTAATTAGTTAGAATATGATGATTTGTATCTTTTCTTTCGACACAAGTATTCATAATTATCTGTTTAATCAACTTTTGTGTTAACAAACTTGGGGGCTGTATAAGATATTCAGAATCAGGACCCTTGTGGTTTCCCTTGAACCATCATTAAGCTCATATAGTATAGAAAAAAAAAATGGTTTGTTTGCTTGTTTGATGAAAAGATAAAGTTAATTGCGTTAATGATGCTTTCCTGCAACTCTCTACATTTATTGTCTGTTTAGTTAAAAAAAATATTCTTCTTTATGAAAACAATAACAAAAAAAAAGTACTTATTTTTGTATTTGAGAGTATTGCTGGAGAAGATTGTGATGAACAAAGAGAGTAGAGATGAACTTGCCTGTAGAATTGTATGAATGTAAAAATAAAATTTCAGCCTTCTTCCACATTGCTCCCTGCTAGACATTCTGATAACAAGTATCCCAACAGGCATAAGAAACCCCATTGAAGCCCATAGGAGAAACCCATGGAGTGTGATATCAAACAGTAGGCTGGAACTCATCTGTTACCATTATAACCAATAATCAATTTCAGCTATACATTTTTTCTTTTTTTCTGCATTGGTGTGTCTTTTCAAATATCAAGACATGTAAAATATGAAATGAAAGAAGAGGAAACCTTCTGGCTGTGGTCTTTCTTGCTTGTATGGAAGTTTTCGTTTTTGTAGGGCTGTTGGGATGAGCTGACTGATTGAAACTTGAGAAGGAGGAGGAGAAAAAGTATAGAACTTGCAGGGATGGAGAAAGGAAACATTCTCTTCTGTAAAAAGAGCATTGTTTATTTGATCCTGATGGAACAAGCTCCAAGCACAATGCAGAAGCCACCCGCGTTGGCTGCTTACTTGTTTGCTATGGATTTCACAAGCCATCTTGAAAGCTTTTGTAGCAATGAGGAAAAAGGAATAAGCAGAACAATGTCAGAGGAGGACCACTAATGGTGGTGGTCAATAATGCCTAAAGTGGACACTGGACTTAGAGGTACTTGATTTTTCTCAAGAAATACAACTACTCTCTCTCTTCCAATAACTCTAAGCCCACCGCTAGTAGATATTGTTCTCTTTAGGCTTCAAGGTTTTTAAAACGCATCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCATTCCCCTCTCCAACCGATGTGGGATCTCACAATTCACTCCCCTTCGAGGCCTAGCGTCCTTGCTGGCACTCGTTTCTCTCTCCGATGAACAAAAGTTAGAAGTTTGATCGTGAATGATTAGAAAACTAAAGTGGGCTGTCAGTTTTTTTTCTTTCCTCTCAGTTTCTCATATGATCTAGAAAGCAAAAGAAAAAGTGGGAAAAATGTTTGAAAGTTGGTGATACTATAAACATTTTTTAGTATAAAAATTTCAAGGTCTTGGGGGGGTTAGTATAGACAAAGTTTTCAACCATGTGGGGGTTCACTGTGAAATTTGATATCATTTTTTGCGGTATGAAAGGAAGAATGTAATGGGATTTTGCAGCAAAATAGTTGGGACTTTCAATAATAGAAGAAAATATGAGCCTGAAAATGAAAGTGGGTTGTTAGTGGATACTGCTCAGAACATTATCTTTTGTTGTCCACTGTGGTCTCTTGTGAACACATACGCCACTGTCGCCCCACACACACACGCACTCAAGAAAGTTGTTTGTTTCTATTTAGCTGAACATTCACGGGTGTAGTGTTATATTGGCGCTGAACTAATTGCTCTTTATTTGTCAATAGAATCTCTTCCAATCTTGCATCATCTTCAGTCACCATTTTTGTTTTTCTTTCAGTCATTCTGCTGTTATTTAACCATAAATTACTACTTTCTTCCTTCTTTTGTAGGTTTTATTCAAATTGCAATATGTCGTTTTCAAGGGTAGAGGCGGTGTATAGCCGAATGGACGAATGTCTTGTACAGGTAAATCACCACTGAACTCAAAAGTTGAAAATATATAGATGGTTAACAAGTGGAAATTTGTGAGATCTCACATTGGTTGGAGAGGAAAACAAAACATTCCTTATAAGGGTGTGGAAGCCTCTCCCTAGTAGACACGTTTTAAAACCATGAGGTTGACACGGGCTAAAGTGGACAATATCCGCCAGTGGTGGGCTTGGGTTGTTACAAATGGTATTAGACTCAGACATTGGGCAGTGTGCTAGCGAGAACACTAGGCTCTCAAGGGGGGTGGATTGTGAGATCCTACATTGGTTGGAGAGGGGAATGAAACATTCCTTATAAGGGTATGGAAACCTCTCCCTAGTAGACGTATTTTAAAACCGTGAGGCTGACGACCGATACGTAACAAATCAAAGTGGACAATATCTGCTATATTATCATGCTAAATCACCACCGAACCCGGTTATGGTAAATTCAATAATATGAAATACTTAAACATCACGAGCTCAATCTTCCTCCTTCACATGTCAATAAATGGACCTTGATCGTAGCAGTTGACTTTTTACCAACTAGAACGAAATTTCACACCCGAAAAGGAAAAGACACGAAAAAGTTGCTCCATAAGCTACACGACTCTAAATTTAGTTTTATTTGAAGGTGAAAGTTTAGAAGATTAGCAGCAATAAATCAGTAAAAAAGTACATTAGGAAAAAGCATCTTTACTTTTCAAAATTGCTAATAGATTCAATTGTTCATTATGATTAATGTATAGTCTTTTTTTAACTCACAGACCAAAAAAGAAGCATGAAGATCTATAAAGGCGAGGTGGGTAAGAAAAAAGTTGGGTCTATCCAAATTATCTTTTTACTGTTGGTTGATTCTTTTTGACAATATATTGTTAATTAGTGGCTTTGAACCCGTGATTGTAATTGCTAATCCAGGAAATTAAATTAACCTTCTTGTAATCATTCAACAAAAGCATATACTAAAGAAGAAAAATAGGGTAATTTTAGTTACATCAAATCT

mRNA sequence

TCATCCTCGTTGTGTTCATCTTCTTCGAGAAAACTGGCTGTTTCTGAGGGCGCGGAGGGTAGAGTTAAAGAGGAGGAACTTCTCATTTCGTCTTCATCTGGATCATCTTCTTCTGCACGTACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAATTGATGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCACGGTTGTTCAGAGACAGATATGACGATTTTAACGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAATGAAATATCTCAAAGGAACGATTCAGTTTTCTTTGCTACAGTTGAAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGTTTTATTCAAATTGCAATATGTCGTTTTCAAGGGTAGAGGCGGTGTATAGCCGAATGGACGAATGTCTTGTACAGACCAAAAAAGAAGCATGAAGATCTATAAAGGCGAGGTGGGTAAGAAAAAAGTTGGGTCTATCCAAATTATCTTTTTACTGTTGGTTGATTCTTTTTGACAATATATTGTTAATTAGTGGCTTTGAACCCGTGATTGTAATTGCTAATCCAGGAAATTAAATTAACCTTCTTGTAATCATTCAACAAAAGCATATACTAAAGAAGAAAAATAGGGTAATTTTAGTTACATCAAATCT

Coding sequence (CDS)

TCATCCTCGTTGTGTTCATCTTCTTCGAGAAAACTGGCTGTTTCTGAGGGCGCGGAGGGTAGAGTTAAAGAGGAGGAACTTCTCATTTCGTCTTCATCTGGATCATCTTCTTCTGCACGTACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAATTGATGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCACGGTTGTTCAGAGACAGATATGACGATTTTAACGTTCCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAATGAAATATCTCAAAGGAACGATTCAGTTTTCTTTGCTACAGTTGAAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGTTTTATTCAAATTGCAATATGTCGTTTTCAAGGGTAGAGGCGGTGTATAGCCGAATGGACGAATGTCTTGTACAGACCAAAAAAGAAGCATGA

Protein sequence

SSSLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESDGSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRNDSVFFATVEAFIILPSILILGIAIITGYKKFYSNCNMSFSRVEAVYSRMDECLVQTKKEA
Homology
[Close]
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match: A0A0A0L2V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 1 

Query: 3   SLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESD 62
           S CSSSSRK AVSE AEGRV EEE LISSSSGSSSSARTQLDLLEQLSSGSQ++DGYESD
Sbjct: 38  SRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESD 97

Query: 63  GSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRN 122
           GSY K TIRDQLA+LFRDR DDF VPLGKNLKKVSAKFLTISQKRNIKRQ+YLNE+SQRN
Sbjct: 98  GSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRN 157

Query: 123 DSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           DSVFFATV AF+ILP I+ILGIAI+TGY + +
Sbjct: 158 DSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

[Close]
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match: A0A0D2PRL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G092300 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-42
Identity = 100/152 (65.79%), Postives = 119/152 (78.29%), Query Frame = 1 

Query: 3   SLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESD 62
           S  SS  +  A SEG EG VKEE+    + SGS SS RTQLDLL+QLSS S   DGYESD
Sbjct: 39  SSSSSCGKAFAQSEGKEGGVKEEDP--PAFSGSLSSTRTQLDLLDQLSSTSSTADGYESD 98

Query: 63  GSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRN 122
           G   K+TIR+QL RL  DR DDF +PLGKNLKKVS KFLTISQKRNI+RQ+YLNE+SQRN
Sbjct: 99  GRSGKLTIREQLVRLVGDRDDDFTIPLGKNLKKVSPKFLTISQKRNIRRQAYLNEVSQRN 158

Query: 123 DSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           DSVFFAT+ AF+++P ++ILGIAI+TGY + +
Sbjct: 159 DSVFFATIGAFVLVPPLVILGIAILTGYVQLF 188

[Close]
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match: V4SRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.3e-42
Identity = 94/150 (62.67%), Postives = 121/150 (80.67%), Query Frame = 1 

Query: 5   CSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESDGS 64
           C + ++   +     G V EE+   +S SGSSSSA+TQLDLLEQL+S S  ++GYESDGS
Sbjct: 29  CKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESDGS 88

Query: 65  YQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRNDS 124
            +K+TIRDQLA+L  DR D+F++PLGKNLKKVS KFLTISQKRNI+RQ+YLN++SQRNDS
Sbjct: 89  SRKLTIRDQLAQLIGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNKVSQRNDS 148

Query: 125 VFFATVEAFIILPSILILGIAIITGYKKFY 155
           VFFAT+ AF+ILP  +ILGIA++TGY + +
Sbjct: 149 VFFATIGAFVILPPFIILGIAVLTGYVQLF 178

[Close]
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match: M1BGE7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017304 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 1 

Query: 7   SSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESDGSYQ 66
           SS R+ A+SE  +GRV +EE L  + SGS SSARTQLDLLEQL+S S  ++GYESD S  
Sbjct: 25  SSIRRAALSEQGDGRVTKEEDL-PTYSGSLSSARTQLDLLEQLTSSSSAVNGYESDSSSG 84

Query: 67  KITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRNDSVF 126
           K TIRDQLA L   R DDF++PLGKNLKK SAKFLT SQKRNIKRQ+YLNE+SQRNDS F
Sbjct: 85  KPTIRDQLANLVGSRDDDFSIPLGKNLKKFSAKFLTTSQKRNIKRQAYLNEVSQRNDSTF 144

Query: 127 FATVEAFIILPSILILGIAIITGYKKFY 155
           FAT+ AF+ILP ++ILGIAI TGY + +
Sbjct: 145 FATIGAFVILPPLVILGIAIATGYVQLF 171

[Close]
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match: W9SD73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 105/155 (67.74%), Postives = 124/155 (80.00%), Query Frame = 1 

Query: 1   SSSLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSS-GSQIIDGY 60
           S S  SSS + LA SEG E  VKE++   S S   SSSAR QLDLLEQLSS  S   DGY
Sbjct: 37  SPSSSSSSFKTLAQSEGTERVVKEQDPPASFSG--SSSARAQLDLLEQLSSTSSSSADGY 96

Query: 61  ESDGSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEIS 120
           ES+GS +K+TIRDQLA+L  DR  DF++PLGKNLKKVSAKFLTISQKRNI+RQ+YLN++S
Sbjct: 97  ESEGSSRKLTIRDQLAQLVADRDGDFSLPLGKNLKKVSAKFLTISQKRNIRRQAYLNQVS 156

Query: 121 QRNDSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           QRNDSVFFATV AF+ILP ++ILGIAI+TGY + +
Sbjct: 157 QRNDSVFFATVGAFVILPPLVILGIAILTGYVQLF 189

[Close]
BLAST of Cp4.1LG06g05850 vs. TAIR10
Match: AT2G42975.1 (AT2G42975.1 unknown protein)

HSP 1 Score: 160.6 bits (405), Expect = 9.0e-40
Identity = 90/125 (72.00%), Postives = 103/125 (82.40%), Query Frame = 1 

Query: 31  SSSGSSSSARTQLDLLEQLSSGSQIIDGYESDGSYQK-ITIRDQLARLFRDRYDDFNVPL 90
           S S SSSS RTQLDLLEQL+S S   DGY SDG   + +TIRDQLA L  DR DDF++PL
Sbjct: 65  SGSSSSSSVRTQLDLLEQLTSTS---DGYLSDGGGSRGLTIRDQLAGLVGDRDDDFSIPL 124

Query: 91  GKNLKKVSAKFLTISQKRNIKRQSYLNEISQRNDSVFFATVEAFIILPSILILGIAIITG 150
           GKNLKKVS KFLTISQKRNIKRQSYLNE+SQRNDSVFFAT+ AF+ILP ++IL IAI+TG
Sbjct: 125 GKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAILTG 184

Query: 151 YKKFY 155
           Y + +
Sbjct: 185 YVQLF 186

[Close]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match: gi|659130963|ref|XP_008465443.1| (PREDICTED: vitellogenin-1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 3.3e-60
Identity = 129/152 (84.87%), Postives = 140/152 (92.11%), Query Frame = 1 

Query: 3   SLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESD 62
           S CSSSSRK AVSE AEGRV EEE LISSSSGSSSSARTQLDLLEQLSSGSQ++DGYESD
Sbjct: 38  SRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESD 97

Query: 63  GSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRN 122
           GSY K TIRDQLA+LFRDR DDF+VPLGKNLKKVSAKFLTISQKRNIKRQ+YLNE+SQRN
Sbjct: 98  GSYGKTTIRDQLAQLFRDRDDDFSVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRN 157

Query: 123 DSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           DSVFFATV AF+ILP I+ILGIAI+TGY + +
Sbjct: 158 DSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

[Close]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match: gi|778695333|ref|XP_004144634.2| (PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 4.3e-60
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 1 

Query: 3   SLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESD 62
           S CSSSSRK AVSE AEGRV EEE LISSSSGSSSSARTQLDLLEQLSSGSQ++DGYESD
Sbjct: 38  SRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESD 97

Query: 63  GSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRN 122
           GSY K TIRDQLA+LFRDR DDF VPLGKNLKKVSAKFLTISQKRNIKRQ+YLNE+SQRN
Sbjct: 98  GSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRN 157

Query: 123 DSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           DSVFFATV AF+ILP I+ILGIAI+TGY + +
Sbjct: 158 DSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

[Close]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match: gi|698486942|ref|XP_009790166.1| (PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris])

HSP 1 Score: 185.7 bits (470), Expect = 7.4e-44
Identity = 104/154 (67.53%), Postives = 125/154 (81.17%), Query Frame = 1 

Query: 1   SSSLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYE 60
           S +L SSS R+ A+SE  +G V EEEL   + SGS SSARTQLDLL+QL+S S  ++GYE
Sbjct: 33  SQTLLSSSLRRAALSEERDGNVTEEEL--PTYSGSLSSARTQLDLLDQLTSSSSAVNGYE 92

Query: 61  SDGSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQ 120
           SD S  K TIR QLA+L  DR DDF++PLGKNLKKVSAKFLT+SQKRNIKRQ+YLNE+SQ
Sbjct: 93  SDSSSSKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIKRQAYLNEVSQ 152

Query: 121 RNDSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           RNDSVFFAT+ AF+ILP ++ILGIAI TGY + +
Sbjct: 153 RNDSVFFATIGAFVILPPLVILGIAIATGYVQLF 184

[Close]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match: gi|697111979|ref|XP_009609863.1| (PREDICTED: uncharacterized protein LOC104103652, partial [Nicotiana tomentosiformis])

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-43
Identity = 102/145 (70.34%), Postives = 120/145 (82.76%), Query Frame = 1 

Query: 6   SSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESDGSY 65
           +SS R+ A+SE  +GR  EEEL   + SGS SSARTQLDLLEQL+S S  ++GYESD S 
Sbjct: 38  ASSLRRAALSEEGDGRFTEEEL--PTYSGSLSSARTQLDLLEQLTSSSSAVNGYESDSSS 97

Query: 66  QKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRNDSV 125
            K TIR QLA+L  DR DDF++PLGKNLKKVSAKFLT+SQKRNIKRQ+YLNE+SQRNDSV
Sbjct: 98  SKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIKRQAYLNEVSQRNDSV 157

Query: 126 FFATVEAFIILPSILILGIAIITGY 151
           FFAT+ AF+ILP ++ILGIAI TGY
Sbjct: 158 FFATIGAFVILPPLVILGIAIATGY 180

[Close]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match: gi|823122724|ref|XP_012472375.1| (PREDICTED: uncharacterized protein LOC105789545 [Gossypium raimondii])

HSP 1 Score: 179.5 bits (454), Expect = 5.3e-42
Identity = 100/152 (65.79%), Postives = 119/152 (78.29%), Query Frame = 1 

Query: 3   SLCSSSSRKLAVSEGAEGRVKEEELLISSSSGSSSSARTQLDLLEQLSSGSQIIDGYESD 62
           S  SS  +  A SEG EG VKEE+    + SGS SS RTQLDLL+QLSS S   DGYESD
Sbjct: 39  SSSSSCGKAFAQSEGKEGGVKEEDP--PAFSGSLSSTRTQLDLLDQLSSTSSTADGYESD 98

Query: 63  GSYQKITIRDQLARLFRDRYDDFNVPLGKNLKKVSAKFLTISQKRNIKRQSYLNEISQRN 122
           G   K+TIR+QL RL  DR DDF +PLGKNLKKVS KFLTISQKRNI+RQ+YLNE+SQRN
Sbjct: 99  GRSGKLTIREQLVRLVGDRDDDFTIPLGKNLKKVSPKFLTISQKRNIRRQAYLNEVSQRN 158

Query: 123 DSVFFATVEAFIILPSILILGIAIITGYKKFY 155
           DSVFFAT+ AF+++P ++ILGIAI+TGY + +
Sbjct: 159 DSVFFATIGAFVLVPPLVILGIAILTGYVQLF 188

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g05850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g05850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2V6_CUCSA3.0e-6084.87Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1[more]
A0A0D2PRL2_GOSRA3.7e-4265.79Uncharacterized protein OS=Gossypium raimondii GN=B456_001G092300 PE=4 SV=1[more]
V4SRD9_9ROSI8.3e-4262.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1[more]
M1BGE7_SOLTU1.4e-4167.57Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400017304 PE=4 SV=1[more]
W9SD73_9ROSA1.4e-4167.74Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1[more]
BLAST of Cp4.1LG06g05850 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42975.19.0e-4072.00 unknown protein[more]
BLAST of Cp4.1LG06g05850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130963|ref|XP_008465443.1|3.3e-6084.87PREDICTED: vitellogenin-1 [Cucumis melo][more]
gi|778695333|ref|XP_004144634.2|4.3e-6084.87PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus][more]
gi|698486942|ref|XP_009790166.1|7.4e-4467.53PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris][more]
gi|697111979|ref|XP_009609863.1|3.7e-4370.34PREDICTED: uncharacterized protein LOC104103652, partial [Nicotiana tomentosifor... [more]
gi|823122724|ref|XP_012472375.1|5.3e-4265.79PREDICTED: uncharacterized protein LOC105789545 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g05850.1Cp4.1LG06g05850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36742FAMILY NOT NAMEDcoord: 7..155
score: 1.1
NoneNo IPR availablePANTHERPTHR36742:SF1SUBFAMILY NOT NAMEDcoord: 7..155
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g05850CmaCh09G007310Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g05850CmoCh09G007240Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g05850Cla023232Watermelon (97103) v1cpewmB776
Cp4.1LG06g05850MELO3C026968Melon (DHL92) v3.5.1cpemeB730
Cp4.1LG06g05850Lsi04G018820Bottle gourd (USVL1VR-Ls)cpelsiB639
Cp4.1LG06g05850MELO3C026968.2Melon (DHL92) v3.6.1cpemedB863
Cp4.1LG06g05850Carg14783Silver-seed gourdcarcpeB0432
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g05850Cp4.1LG02g02480Cucurbita pepo (Zucchini)cpecpeB469
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g05850Wild cucumber (PI 183967)cpecpiB788
Cp4.1LG06g05850Cucumber (Chinese Long) v2cpecuB786
Cp4.1LG06g05850Watermelon (Charleston Gray)cpewcgB695
Cp4.1LG06g05850Cucumber (Gy14) v2cgybcpeB566
Cp4.1LG06g05850Silver-seed gourdcarcpeB0435
Cp4.1LG06g05850Silver-seed gourdcarcpeB1455
Cp4.1LG06g05850Cucumber (Chinese Long) v3cpecucB0973
Cp4.1LG06g05850Wax gourdcpewgoB0990
Cp4.1LG06g05850Cucurbita pepo (Zucchini)cpecpeB463
Cp4.1LG06g05850Cucumber (Gy14) v1cgycpeB0074
Cp4.1LG06g05850Cucurbita maxima (Rimu)cmacpeB503
Cp4.1LG06g05850Cucurbita maxima (Rimu)cmacpeB511
Cp4.1LG06g05850Cucurbita moschata (Rifu)cmocpeB461
Cp4.1LG06g05850Cucurbita moschata (Rifu)cmocpeB469