CmoCh09G007240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G007240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TRNA-methyltransferase
Location	Cmo_Chr09 : 3613456 .. 3619518 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCGAATTTCGTGATTGCGTTCCATGGCTCAAATCCACACTTTTCTTCTTCTTCTTCTTCAAATCTTCTGTAGAATAAATGGCCGCTTTTGAAGTTTCATTCTCGTTGTTCATCTTCTTCGAGAAAATTGGCTGTTTCTGAGGGCGCCGAGGGTAGACTCTTCTCATTTCGTCTTCATCCGGTATGCATTGATTCACTGCTTTTGTTTCGTTGATGCGTATTTTCTTGCTGTTCTTTCTATTATCTTACTGTCGTTGTTTCGTCTCTTTGCTTGCTGTATATTTGTTTCTTCAAAATTGTGATTCGTTTGATTCTAGCTCTGTAATCAATCCTATAGTTTAATTACCTCTACATGGAAGAATCCTATTCGTAAATCTGAACGATTGAGATTTTAAATTCTTTTGAGAATATATTATTAAGGGAATGGACATTATGGACTCCTTTTTTTTTGATGTGGAAGGGGATCCAATTCCAATTCCAATTCAAGTGCCTTATCTATACAGATATAATAAAGTAAAGATTATCTTGTTTTTCCTGGCTAAATACGTTTCTAGTTTCTATGCTTCGACATAGCATGATTCCATTTCCAAATTTAGTTCTAATGCCTTTAGAAATTTCATGAGGAATCAAATTTTAACAATTTCATAAGGACGAAATATGATAATTTTAGAAGTAACGGAATCAAATTGAAATAAGGTTAAAGCATGAGAAGTCAAAAGTGTATTTTAACCTACTTGTTTTAAAGATGTTACGAAGCAATTAAAGATTTATCATTATTTTTCTTTTCAACTGTATAGGATCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAACTGATGGTAAGTGAGCTGATTCTCTCTTCTAACAAGCAAACAAAATGGGAATGAAATAGAATGGCATCAGCCTTCTTTCATTGAAAGAGATCATCATCATTTCACTTGAACTTACTGACATTTTATGTTATCAGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCGCAGTTGCTCAGAGACAGAGATGACGATTTTAACATCTCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAACGAAGTATCTCAAAGGAACGATTCAGTTTTTTTTGCTACAGTTGGAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGTAGGGCTAACTTTTTCCATGATATACAGTTTATACAAACATCATATGTATAGAAGTGATTATCTCATGATATTGAAGATTCATTGCCCATTGTTTTCATCTTAATTTTCAACTTCAGTTCTATATTTCTGGAAAAGTAGAATGCAATAGCCTAAGCTCACCATTAGCCGTCAGTCTCACGGTTTTAAAACGCGTCTTCTATAGAGAGGGTCTAGCCCTACTCCGACCAGTGTCTCGCACCGTCCGGTGACTGGCTCGGATACCATTTGTAACAACTCAAGCACACTACTAACATATATTGTCTGCTTTAGCTCGTTACGTATCACTGTTAGCTTCACGGTTTTAAAACGCGTATGTTAGAGCGAGGTTTCCACACCCTTACAAGTAATGTTTTGTGCTCCTCTTCAACCGACGTGGGATCTCACAATTTTGAAAATAACTGACTATCAGATGACAGTATCTTTCTTTTTTTAAAAAAGAAAAAAGAAAAATTATAGGAACCAGATGACAGTATCATCTCTTTATTCTTCAAAAACTCTGTATTCATTAGGTTCAAATCTGTGATAGAAAACAGAAAAACCACATCAGAAAATATCTCCTGCAAGGCCAGATTTCATCTCTTACAAAATACCACACTCTTTCCCTATACAAATCCCAATAAGAGGAGAGATATGAGTAAGAAGAATGACAACAATCTCGTGTTAGTGAAAGCAAGCTTCTGACATATCTATTTACTCCTTCAGCAAGGATCAGTGTTCAGCTCCTTTTGCTTGTCATTTGGAGAGAGCACTTGATCGGTAGGTGTTACCAAATCATTCCCCAAAATAACTCCTTGCTTTTGTATATACTCCAGTTTGTCTTGGAATAGGTAAAAGAATGAAATCAAAGAAATTTCAACAGTGAAAATTATAGTCCAAATTCGTATACTTCGAGATGTTTTCTCATGGTAAGCAAATAATCCTGAATATACATTGAAGACTCCTAGGAGAGATACTGCGGTGCCCAGCATCCAATGTATAAAAAACCATAGGCTTCTTGTGTTAGAGCCCCTGCAAGAGAGATAGAAAAGAGAGAATTCAGCATATAGAAGTCAATACAAAAGTTGATTTTGGAGTAAGGAAACTTTGTTTGTTTTTTCTAATCGTTTCTTTTAACAAAAGATCAGTAGAAACATGGTTGTTGAATAACTGTTACAAAAATTGTTTTTCTGAGTCTGTTCTTGGATGGCCTATTCTTACAACAACCAGTACTCTTCATCCTTCAAAAATTGTTGGCTCGCATGTATAATAACACAAACATTTATAAGCTGCCCAATCATATTCTTAGAAATGTTTCGAATATAGAACAGGATATATTGCCTTATATCTGATGAAGTATGAAATTTTACCTCTTTGGCCTTACAATTCCAATCAACGCCTGTAACCAGATCATCCCATATAGGCCAATCCCTATCCTTTGGTGACTATTATTGAAAGCATTGTTGAATTTCTTGATAGACATGACTGCTCCTGCTGTGACTAGTAATACAGAGAGTATCTGTTGAACAGAATCAAGTGAAGATCATATAATGACTGTATTAACTTATTTTAGAATGGAAAATACTAGCATTGTGATCACAAATCACAGTTCTTTATTGGAATGAGATCCATCAAAGTGAACCCCATCTATGTGGTTGAAGGATGATCAAAATCCTTCAACTTCATATTTTTATATCCTTTTTGACTTTTTAGAGCTAAACCTCACCTAACTCCTATATTATAATCCATAAACCTGCTAGATTTCAACAATATGGATATTTGGCTATGAGTTTCTAATTAGTTAGAATATGATGATTTGTATCTTTTCTTTCGACACAAGTATTCATAATTATCTGCTTGATCAACTTTTGTGTTAACAAACTTGGGGGCTGTATAAGATATCCAGAATCAGGACCCTTGTGGTTTCCCTTGAACCATCATTAAGCTCATAAAGTATAGAAAAAAAAAATCGTTTGTTTGCTTGTTTGATGAAAAGATAAAGTTAATTGCGTTAATGATGCTTTCCTGCAACTCTCTACATTTATTGTCTGTTTAGTTAAAAAAAAAACACTCTTCTTTATGAAAACAATAACAAAAAAAAGTACTTATTTTAGTATTTGAGAGTATTGCTGGAGAAGATTGTGATGAACAAAGAGCGCAGAGATGAACTTGCCTGTAGAATTGTATGAATGTAAAAATAAAATTTCAGCCTTCTTCCACATTGCTCCCTGCTAGACATTCTGATAACAAGTATCCCAACAGGCATAAGAAACCCCATTGAAGCCCATAGGAGAAACCCATGGAGTGTGATATCAAACAGTAGGCTGGAACTCATCTGTTACCATTATGACCAATAATCAATTTCAGCTATACATTCTTTTTCTGCATTGATATTTCTTTTCAAATATCAAGACATGTAAAATATGAAATGAAAGAAGAGGAAACCTTCTGGCTGTGGTCTTTCTTGCTTGTATGGAAGTTTTCGTTTTTGTAGGGCTGTTGGGATGAGCTGACTGGTTGAAATGTGAGAAGGAGGAGGAGAAAAAGTATTGAACTTGCAGGGATGGAGAAAGGAAACATTCTCTTCTGTAAAAAGAGCATTGTTTATTTTGCTCCTGATGGAACAAGCTCCAAGCACAATGCAGAAGCCACCCGCGTTGGCTGCTTATTTGTTTGCTATGGATTTCACAAGCCATCTTGAAAGCTTTTGTAGCAATGAGGAAAAAGGAATAAGCAGAACAATGTCAGAGGAGGACCACTAATGGTGGTGGTCAATAATGCCTAAAGTGGACACTGGACTAAGAGGTACTTGATTTTTCTCAAGAAATACAACTACTCTATCTCTCTCTCTCTTCCCTCCCCCAAGATTATGTACATATCCCCAGTAACCCCAAGTCCATCGTTAGTAGATATTATCCTCTTTAAGTCTCAAGGTTTGTAAAACACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCCCCTCTATAACCGATGTGGGATCTCACAATTCACTTCCCTTCGAGGCCTAGCATCCTCGCTGGCACCCGTTCCTCTCCCCGATGAACAAAAGTTAGAAGTTTGATCCTGAATGATTAGAAAACTAAAGTGGGCTGTCAGTTTTTTTCTTTCCTCTCAGTTTCTCATATGATCTAGAAAGCAAAAGAAAAAGTGGGAAAAATGTTTGAAAGTTGGTGATACTATAAACATTTTTTAGTATAAAAATTTCAAGGTCTTGGGGGAGGGTTAGTATAGACAAAGTTTTCAACCATGTGGGGTTCACTGTGAAATTTGATATCATTTTTTGCGGTATGAAAGGAAGAATGTAATGGGATTTTGCAGCAAAATAGTTGGGACTTTCAATAATAGAAGAAAATATGAGCCTGAAAATGAAAGTGGGTTGTTAGTGGATACTGCTCAGAACATTATCTTTTGTTGTCCACTGTGGTCTCTTGTGAACACATACGCCACAGTCGCCCCACACACACACACATACACGCACTCAAGAAAGTTGTTTGTTTCTATTTAGCTGAACATTCACGGGTGTAGTGTTATATTGGCGCTGAACTAATTGCTCTTTATTTGTCAATAGAATCTCTTCCAATCTTGCATCATCTTCAGTCACCATTTTTGTTTTTCTTTCAGTCATTCTGCTGTTATTTAACCATAAATTACTATTTCCTTCCTTCTTTTGTAGGCTTTATTCGAATTGCAATATGTCGTTATCAAGGGTAGAGGTGGTGTATAGCTGAATGGACGAATGTCTTGTACAGGTAAATCGCCACTGGTTGAAAATATATAGATGGTTAACAAGTGGAAATTTGTGAGATCTCACGTTGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAGTCTCTCCCTAGTAGACACGTTCTAAAATCATGAGATTGACACGGGCTAAAGTGGACAATATCTGCTAGTAGTGGGCTTAGGCTGTTACAAATGGTATCATAGCCAAACACTAAGCTCTTAAGGGGTGGATTGTGAGATCCTACGTTGGTTGGAGAGGGGAATGAAATATTACTTATAAGGGTGTGGAAACTTCTCCCTAGTAGATGCGTCTTAAAACCGTGAGGCTGACGACGATACGTAATGGATCAAAGCGGACAATATCTAAATGACCACCGAACTCAATTATGGTAAATTCAATAATTTGAAATAATTAAACATCACGAGCTCAATCTTCCTCCTTCACATGTCAATAAATGGACCTTAATCGTAGCAGTTGACTTTTTACCAACTAGAACAAAATTTCACACCCGAAAAGGAAAAGACAAAAAGTTGCTCCATAAGCTACACGACTCTAAATTTAGTTTTATTTGACAGTGAAAGTTTAGAAGATTAGCAACGATAAATCAGTAAAAAAAGAAAAAGCATCTTTACTTTTCAAAATTGCTAATAGATTCAATTGTTCATTATGATTAATGTATAGTCTTTTTTTAACTCACAGACCAAAAAAGAAGCATGAAGATCTATAAAGGCGAGGTGGGTAAGAAAAAAGTTGGGTCTATCCAAATTATCTTTTTACTGTTGGTTGATTCTTTTTGACAATATATTGTTAATTAGTGGCTTTGAACCCGTGATTGTAATTGCTAATCCAGGCAATTAAATTAACCTTCTTGTAATCATTCAACAAAAGCATATACTAAAGAAGAAAAATAGGGTAATTTTAGTTACATCAAATCTCAATATAATTCCATAATGTATTGTAGACAGAGAG

mRNA sequence

ATGAACTCGAATTTCAATAAATGGCCGCTTTTGAAGTTTCATTCTCGTTGTTCATCTTCTTCGAGAAAATTGGCTGTTTCTGAGGGCGCCGAGGGATCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAACTGATGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCGCAGTTGCTCAGAGACAGAGATGACGATTTTAACATCTCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAACGAAGTATCTCAAAGGAACGATTCAGTTTTTTTTGCTACAGTTGGAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGCTTTATTCGAATTGCAATATGTCGTTATCAAGGGTAGAGGTGGTGTATAGCTGAATGGACGAATGTCTTGTACAGACCAAAAAAGAAGCATGAAGATCTATAAAGGCGAGGTGGGTAAGAAAAAAGTTGGGTCTATCCAAATTATCTTTTTACTGTTGGTTGATTCTTTTTGACAATATATTGTTAATTAGTGGCTTTGAACCCGTGATTGTAATTGCTAATCCAGGCAATTAAATTAACCTTCTTGTAATCATTCAACAAAAGCATATACTAAAGAAGAAAAATAGGGTAATTTTAGTTACATCAAATCTCAATATAATTCCATAATGTATTGTAGACAGAGAG

Coding sequence (CDS)

ATGAACTCGAATTTCAATAAATGGCCGCTTTTGAAGTTTCATTCTCGTTGTTCATCTTCTTCGAGAAAATTGGCTGTTTCTGAGGGCGCCGAGGGATCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCTGGTAGCCAAATAACTGATGGTTATGAAAGCGATGGCAGTTACCAGAAAATTACGATCCGTGATCAGCTTGCGCAGTTGCTCAGAGACAGAGATGACGATTTTAACATCTCGTTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAATCATACTTGAACGAAGTATCTCAAAGGAACGATTCAGTTTTTTTTGCTACAGTTGGAGCATTTATAATTTTGCCTTCTATTTTAATATTGGGAATTGCTATAATAACTGGCTATAAAAAGCTTTATTCGAATTGCAATATGTCGTTATCAAGGGTAGAGGTGGTGTATAGCTGA

Homology

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BLAST of CmoCh09G007240 vs. TrEMBL
Match: A0A0A0L2V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 125/161 (77.64%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 6   NKWPLLKFHSRCSSSSRKLAVSEGAEG--------------SSSSARTQLDLLEQLSSGS 65
           NK    KFHSRCSSSSRK AVSE AEG              SSSSARTQLDLLEQLSSGS
Sbjct: 29  NKSLPFKFHSRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGS 88

Query: 66  QITDGYESDGSYQKITIRDQLAQLLRDRDDDFNISLGKNLKKVSAKFLTISQKRNIKRQS 125
           Q+ DGYESDGSY K TIRDQLAQL RDRDDDF + LGKNLKKVSAKFLTISQKRNIKRQ+
Sbjct: 89  QLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQA 148

Query: 126 YLNEVSQRNDSVFFATVGAFIILPSILILGIAIITGYKKLY 153
           YLNEVSQRNDSVFFATVGAF+ILP I+ILGIAI+TGY +L+
Sbjct: 149 YLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

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BLAST of CmoCh09G007240 vs. TrEMBL
Match: A0A151U237_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_005956 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 1


Query: 4   NFNKWPLLKFHSRCSSSSRKLAVSEGAE-GSSSSARTQLDLLEQLSSGSQITDGYESDGS 63
           N N  P+  +H  C+ +       E A  GS SS+R QLDLLEQL+S S    GYESDGS
Sbjct: 38  NNNNNPIKFYHPTCAQTQDTGVTQEDASAGSLSSSRAQLDLLEQLTSTSSPNSGYESDGS 97

Query: 64  YQKITIRDQLAQLLRDRDDDFNISLGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDS 123
             K+TIR+QLAQL+ +RDDDF+I LGKNLKKVSAKFLTISQKRNI+RQ+YLNEVSQRNDS
Sbjct: 98  SPKLTIREQLAQLVGERDDDFSIPLGKNLKKVSAKFLTISQKRNIRRQAYLNEVSQRNDS 157

Query: 124 VFFATVGAFIILPSILILGIAIITGYKKLY 153
           VFFAT+GAF+ILP  +ILGIAI+TGY +L+
Sbjct: 158 VFFATIGAFVILPPFIILGIAILTGYVQLF 187

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BLAST of CmoCh09G007240 vs. TrEMBL
Match: A0A0L9UV72_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g016100 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-42
Identity = 94/126 (74.60%), Postives = 109/126 (86.51%), Query Frame = 1


Query: 27  SEGAEGSSSSARTQLDLLEQLSSGSQITDGYESDGSYQKITIRDQLAQLLRDRDDDFNIS 86
           +    GS SS+R QLDLLEQL+S S    GYESDGS +K+TIR+QLAQL+ +RDDDFNI 
Sbjct: 54  ASSGNGSLSSSRAQLDLLEQLTSTSSPNTGYESDGSSRKLTIREQLAQLVGERDDDFNIP 113

Query: 87  LGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAIIT 146
           LGKNLKKVSAKFLTISQKRNIKRQ+YLNEVSQRNDSVFFAT+GAF+ILP  +ILGIAI+T
Sbjct: 114 LGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAILT 173

Query: 147 GYKKLY 153
           GY +L+
Sbjct: 174 GYVQLF 179

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BLAST of CmoCh09G007240 vs. TrEMBL
Match: A0A0S3RJH1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G037600 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-42
Identity = 94/126 (74.60%), Postives = 109/126 (86.51%), Query Frame = 1


Query: 27  SEGAEGSSSSARTQLDLLEQLSSGSQITDGYESDGSYQKITIRDQLAQLLRDRDDDFNIS 86
           +    GS SS+R QLDLLEQL+S S    GYESDGS +K+TIR+QLAQL+ +RDDDFNI 
Sbjct: 65  ASSGNGSLSSSRAQLDLLEQLTSTSSPNTGYESDGSSRKLTIREQLAQLVGERDDDFNIP 124

Query: 87  LGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAIIT 146
           LGKNLKKVSAKFLTISQKRNIKRQ+YLNEVSQRNDSVFFAT+GAF+ILP  +ILGIAI+T
Sbjct: 125 LGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAILT 184

Query: 147 GYKKLY 153
           GY +L+
Sbjct: 185 GYVQLF 190

[Close]

BLAST of CmoCh09G007240 vs. TrEMBL
Match: V4SRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-42
Identity = 92/121 (76.03%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 32  GSSSSARTQLDLLEQLSSGSQITDGYESDGSYQKITIRDQLAQLLRDRDDDFNISLGKNL 91
           GSSSSA+TQLDLLEQL+S S   +GYESDGS +K+TIRDQLAQL+ DRDD+F+I LGKNL
Sbjct: 58  GSSSSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLIGDRDDEFSIPLGKNL 117

Query: 92  KKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAIITGYKKL 151
           KKVS KFLTISQKRNI+RQ+YLN+VSQRNDSVFFAT+GAF+ILP  +ILGIA++TGY +L
Sbjct: 118 KKVSEKFLTISQKRNIRRQAYLNKVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQL 177

Query: 152 Y 153
           +
Sbjct: 178 F 178

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BLAST of CmoCh09G007240 vs. TAIR10
Match: AT2G42975.1 (AT2G42975.1 unknown protein)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-40
Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 1


Query: 27  SEGAEGSSSSARTQLDLLEQLSSGSQITDGYESDGSYQK-ITIRDQLAQLLRDRDDDFNI 86
           S     SSSS RTQLDLLEQL+S S   DGY SDG   + +TIRDQLA L+ DRDDDF+I
Sbjct: 63  SFSGSSSSSSVRTQLDLLEQLTSTS---DGYLSDGGGSRGLTIRDQLAGLVGDRDDDFSI 122

Query: 87  SLGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAII 146
            LGKNLKKVS KFLTISQKRNIKRQSYLNEVSQRNDSVFFAT+GAF+ILP ++IL IAI+
Sbjct: 123 PLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAIL 182

Query: 147 TGYKKLY 153
           TGY +L+
Sbjct: 183 TGYVQLF 186

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BLAST of CmoCh09G007240 vs. NCBI nr
Match: gi|659130963|ref|XP_008465443.1| (PREDICTED: vitellogenin-1 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.3e-55
Identity = 124/156 (79.49%), Postives = 133/156 (85.26%), Query Frame = 1


Query: 11  LKFHSRCSSSSRKLAVSEGAEG--------------SSSSARTQLDLLEQLSSGSQITDG 70
           LKFHSRCSSSSRK AVSE AEG              SSSSARTQLDLLEQLSSGSQ+ DG
Sbjct: 34  LKFHSRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDG 93

Query: 71  YESDGSYQKITIRDQLAQLLRDRDDDFNISLGKNLKKVSAKFLTISQKRNIKRQSYLNEV 130
           YESDGSY K TIRDQLAQL RDRDDDF++ LGKNLKKVSAKFLTISQKRNIKRQ+YLNEV
Sbjct: 94  YESDGSYGKTTIRDQLAQLFRDRDDDFSVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEV 153

Query: 131 SQRNDSVFFATVGAFIILPSILILGIAIITGYKKLY 153
           SQRNDSVFFATVGAF+ILP I+ILGIAI+TGY +L+
Sbjct: 154 SQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

[Close]

BLAST of CmoCh09G007240 vs. NCBI nr
Match: gi|778695333|ref|XP_004144634.2| (PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 125/161 (77.64%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 6   NKWPLLKFHSRCSSSSRKLAVSEGAEG--------------SSSSARTQLDLLEQLSSGS 65
           NK    KFHSRCSSSSRK AVSE AEG              SSSSARTQLDLLEQLSSGS
Sbjct: 29  NKSLPFKFHSRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGS 88

Query: 66  QITDGYESDGSYQKITIRDQLAQLLRDRDDDFNISLGKNLKKVSAKFLTISQKRNIKRQS 125
           Q+ DGYESDGSY K TIRDQLAQL RDRDDDF + LGKNLKKVSAKFLTISQKRNIKRQ+
Sbjct: 89  QLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQA 148

Query: 126 YLNEVSQRNDSVFFATVGAFIILPSILILGIAIITGYKKLY 153
           YLNEVSQRNDSVFFATVGAF+ILP I+ILGIAI+TGY +L+
Sbjct: 149 YLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLF 189

[Close]

BLAST of CmoCh09G007240 vs. NCBI nr
Match: gi|1009126286|ref|XP_015880069.1| (PREDICTED: uncharacterized protein LOC107416123 [Ziziphus jujuba])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 98/126 (77.78%), Postives = 111/126 (88.10%), Query Frame = 1


Query: 27  SEGAEGSSSSARTQLDLLEQLSSGSQITDGYESDGSYQKITIRDQLAQLLRDRDDDFNIS 86
           S  +EGS SSARTQLDLLEQL+S S   DGYESDGS  + TIR+QLAQL  DRDD+F+I 
Sbjct: 60  SSFSEGSLSSARTQLDLLEQLTSTSSSVDGYESDGSSWRPTIREQLAQLFGDRDDEFSIP 119

Query: 87  LGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAIIT 146
           LGKNLKKVSAKFLTISQKRNI+RQ+YLNEVSQRNDSVFFAT+GAFIILP ++ILGIAIIT
Sbjct: 120 LGKNLKKVSAKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFIILPPVVILGIAIIT 179

Query: 147 GYKKLY 153
           GY +L+
Sbjct: 180 GYVQLF 185

[Close]

BLAST of CmoCh09G007240 vs. NCBI nr
Match: gi|1012362153|gb|KYP73336.1| (hypothetical protein KK1_005956 [Cajanus cajan])

HSP 1 Score: 179.9 bits (455), Expect = 3.7e-42
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 1


Query: 4   NFNKWPLLKFHSRCSSSSRKLAVSEGAE-GSSSSARTQLDLLEQLSSGSQITDGYESDGS 63
           N N  P+  +H  C+ +       E A  GS SS+R QLDLLEQL+S S    GYESDGS
Sbjct: 38  NNNNNPIKFYHPTCAQTQDTGVTQEDASAGSLSSSRAQLDLLEQLTSTSSPNSGYESDGS 97

Query: 64  YQKITIRDQLAQLLRDRDDDFNISLGKNLKKVSAKFLTISQKRNIKRQSYLNEVSQRNDS 123
             K+TIR+QLAQL+ +RDDDF+I LGKNLKKVSAKFLTISQKRNI+RQ+YLNEVSQRNDS
Sbjct: 98  SPKLTIREQLAQLVGERDDDFSIPLGKNLKKVSAKFLTISQKRNIRRQAYLNEVSQRNDS 157

Query: 124 VFFATVGAFIILPSILILGIAIITGYKKLY 153
           VFFAT+GAF+ILP  +ILGIAI+TGY +L+
Sbjct: 158 VFFATIGAFVILPPFIILGIAILTGYVQLF 187

[Close]

BLAST of CmoCh09G007240 vs. NCBI nr
Match: gi|568862881|ref|XP_006484898.1| (PREDICTED: uncharacterized protein LOC102617002 [Citrus sinensis])

HSP 1 Score: 179.1 bits (453), Expect = 6.4e-42
Identity = 92/121 (76.03%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 32  GSSSSARTQLDLLEQLSSGSQITDGYESDGSYQKITIRDQLAQLLRDRDDDFNISLGKNL 91
           GSSSSA+TQLDLLEQL+S S   +GYESDGS +K+TIRDQLAQL+ DRDD+F+I LGKNL
Sbjct: 58  GSSSSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLIGDRDDEFSIPLGKNL 117

Query: 92  KKVSAKFLTISQKRNIKRQSYLNEVSQRNDSVFFATVGAFIILPSILILGIAIITGYKKL 151
           KKVS KFLTISQKRNI+RQ+YLNEVS+RNDSVFFAT+GAF+ILP  +ILGIA++TGY +L
Sbjct: 118 KKVSEKFLTISQKRNIRRQAYLNEVSERNDSVFFATIGAFVILPPFIILGIAVLTGYVQL 177

Query: 152 Y 153
           +
Sbjct: 178 F 178

The following BLAST results are available for this feature:

BLAST of CmoCh09G007240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh09G007240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2V6_CUCSA	1.6e-55	77.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1	[more]
A0A151U237_CAJCA	2.6e-42	66.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_005956 PE=4 SV=1	[more]
A0A0L9UV72_PHAAN	5.8e-42	74.60	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g016100 PE=4 SV=1	[more]
A0A0S3RJH1_PHAAN	5.8e-42	74.60	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G037600 PE=...	[more]
V4SRD9_9ROSI	5.8e-42	76.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1	[more]

BLAST of CmoCh09G007240 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42975.1	1.3e-40	73.23	unknown protein	[more]

BLAST of CmoCh09G007240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130963\|ref\|XP_008465443.1\|	1.3e-55	79.49	PREDICTED: vitellogenin-1 [Cucumis melo]	[more]
gi\|778695333\|ref\|XP_004144634.2\|	2.3e-55	77.64	PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus]	[more]
gi\|1009126286\|ref\|XP_015880069.1\|	1.3e-42	77.78	PREDICTED: uncharacterized protein LOC107416123 [Ziziphus jujuba]	[more]
gi\|1012362153\|gb\|KYP73336.1\|	3.7e-42	66.00	hypothetical protein KK1_005956 [Cajanus cajan]	[more]
gi\|568862881\|ref\|XP_006484898.1\|	6.4e-42	76.03	PREDICTED: uncharacterized protein LOC102617002 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G007240.1	CmoCh09G007240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36742	FAMILY NOT NAMED	coord: 32..153 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G007240	CmaCh09G007310	Cucurbita maxima (Rimu)	cmacmoB027
CmoCh09G007240	Cla023232	Watermelon (97103) v1	cmowmB030
CmoCh09G007240	MELO3C026968	Melon (DHL92) v3.5.1	cmomeB025
CmoCh09G007240	Lsi04G018820	Bottle gourd (USVL1VR-Ls)	cmolsiB013
CmoCh09G007240	Cp4.1LG06g05850	Cucurbita pepo (Zucchini)	cmocpeB034
CmoCh09G007240	Cp4.1LG02g02480	Cucurbita pepo (Zucchini)	cmocpeB030
CmoCh09G007240	MELO3C026968.2	Melon (DHL92) v3.6.1	cmomedB025
CmoCh09G007240	Carg14783	Silver-seed gourd	carcmoB0426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G007240	Watermelon (97103) v2	cmowmbB009
CmoCh09G007240	Wax gourd	cmowgoB0022
CmoCh09G007240	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh09G007240	Cucurbita moschata (Rifu)	cmocmoB022
CmoCh09G007240	Cucumber (Gy14) v1	cgycmoB0071
CmoCh09G007240	Cucurbita maxima (Rimu)	cmacmoB432
CmoCh09G007240	Cucurbita maxima (Rimu)	cmacmoB439
CmoCh09G007240	Wild cucumber (PI 183967)	cmocpiB015
CmoCh09G007240	Cucumber (Chinese Long) v2	cmocuB016
CmoCh09G007240	Watermelon (Charleston Gray)	cmowcgB009
CmoCh09G007240	Cucurbita pepo (Zucchini)	cmocpeB023
CmoCh09G007240	Cucumber (Gy14) v2	cgybcmoB437
CmoCh09G007240	Silver-seed gourd	carcmoB0429
CmoCh09G007240	Silver-seed gourd	carcmoB1399
CmoCh09G007240	Cucumber (Chinese Long) v3	cmocucB0019