CsaV3_4G031920 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G031920
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr4 : 22474595 .. 22476782 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCACAATGCAAATTAAACAAAATAAAACAAAAAGAAATAAGAGAAAAATCATAGCCTCCAAAATCAAGTTCCTCTCCCAGTTCCAGTAATGGAGAACAGAAGCCTTAGATTTTTCATTTGAAAACCATCAAATCATGGCCTCCAATTTCATTATTGGATTTCATTGCTCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCATAATAAATCGCTGCCCTTCAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCCGAGAGCGCCGAGGGTAGAGTTAACGAAGAGGAATTTCTCATTTCGTCTTCTTCTGGTATGTGTGTTAATTCACTGCTTAAATGTGTATTTTCTTGATTTGTTCTTTGTTTTGTCTCTTTGCTGCTTGTTTATTTGTTCCCTTCGTAATTGATTCTTCGTTCTGTAATTCTATAGTTTAATATATTCATTTTCAATGGATGAATTCCTATTTGTAAATCTGAATGGTTTGGGTTTAAAATTCTATTTGAGAATATGTTATTAAGAGAATGGACATTATGGACTCCCTTTTGATGTGGAAGATCCAATTCCAATCCAACTGGTCTATCTATACAAATATAGTAAAGTAATGCTCATCTTGTTTTCCTTGGTTCAATATATTTCTACTTTCTAGGCTTTGAATAGTATAAATCCATCTGCAATTCAGTTCGGGTGCTTTTAAAAAATTTCATTATCATTTTCGGGTCACCATAAAATTTGAAACCTAAGAAGCACGTAACAAGGATACGACGTGATATGAACACGACGACATATCATGTTTTAAAAATCTAGGACATGATACGGCAATGACACACTTATCAAAATATTCACTTTTTAAAAATATATATCATGTTTATGATAAAAGAAATTTCATATTAAATAATTTAATGCATTTATATGCTTAAAAAACCTAGTTCGATGTATTTCATACTCATATGTGTCTTTTTAGTCTACCCAATAAGTGTTCTATGCATACTAACAAGTGTCGGATAGCTATCCACCAAGTGTCGACCTAAACACGCTAGCTAAACTAAAGTATTTGTATTCTTTGTTTGGAACTATTTATTTTTCCTATTATTTGTGGAAATGTTATCAAACATTTGTTAATAGCAAGAAATAGACAAACCCAGTTAGTATCTGTGGTTTCATTAGAAAAAGAATAACAAAACTTCATCGGACAATGTCAACAGCTTGCTATTAGGACGAAATATGAGGGCTATCGAAGTTTAGAAATCTACTTGAAACTAAAGTTAAACAATGAGTCTAAAAGTGTAGTTTATGTCATTTTGATCTTAATATTTTGAGGATTGCTCAATTTAAGTTTCTATACATGACAAAGTATCTTGAGTTTAGTTCACAGTGATAGTTTATTGTTCATTTTTAATTTTTTAAACAACTGTGTTATCTATGTATTTTTACTATAAATTTTGAATATATATTCGTATATTATATTTCTTTATTTCCTTGCATGAAATTTATTGTTACTCTTTTCGTAAATTTTGCGAGACTAAATTTAAGATTTATCGAAACTACTAATACTAAAATTGAACAAACTTGAAAGTATTGGAACGAAAATGTTATTTTAATCTTAATCTTATTGTGTATAGATTATTTATCATTATTTTTTTCCCCTCAACTGTATAGGATCATCTTCTTCTGCACGCACACAACTCGATCTCTTGGAGCAGCTCTCTTCTGGTAGCCAATTAGTTGATGGTAAGTCAGCTGTGACTCTCTTCTCTAAACAACTAAACAAAGTGAGAACGAAATAGAATGGCATTGGCTTTCTTTCATTGAACTTGATAGAGATGAGTTCACTTGAACTTACTGAGATTATGTTATGTTGTCAGGTTATGAAAGCGATGGCAGTTACGGGAAAACTACTATTCGTGATCAACTTGCCCAATTGTTCAGAGACAGAGATGACGATTTTACCGTTCCTTTGGGCAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTTAATGAAGTATCTCAAAGAAACGATTCTGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTAGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGA

mRNA sequence

ATGGCCTCCAATTTCATTATTGGATTTCATTGCTCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCATAATAAATCGCTGCCCTTCAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCCGAGAGCGCCGAGGGTAGAGTTAACGAAGAGGAATTTCTCATTTCGTCTTCTTCTGGATCATCTTCTTCTGCACGCACACAACTCGATCTCTTGGAGCAGCTCTCTTCTGGTAGCCAATTAGTTGATGGTTATGAAAGCGATGGCAGTTACGGGAAAACTACTATTCGTGATCAACTTGCCCAATTGTTCAGAGACAGAGATGACGATTTTACCGTTCCTTTGGGCAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTTAATGAAGTATCTCAAAGAAACGATTCTGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTAGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGA

Coding sequence (CDS)

ATGGCCTCCAATTTCATTATTGGATTTCATTGCTCAAATCCACACTTTTCTTCTTCTTCTTCTTCTTCTTCAAATCTGCTGCATAATAAATCGCTGCCCTTCAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCCGAGAGCGCCGAGGGTAGAGTTAACGAAGAGGAATTTCTCATTTCGTCTTCTTCTGGATCATCTTCTTCTGCACGCACACAACTCGATCTCTTGGAGCAGCTCTCTTCTGGTAGCCAATTAGTTGATGGTTATGAAAGCGATGGCAGTTACGGGAAAACTACTATTCGTGATCAACTTGCCCAATTGTTCAGAGACAGAGATGACGATTTTACCGTTCCTTTGGGCAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAATATCAAAAGACAAGCATACCTTAATGAAGTATCTCAAAGAAACGATTCTGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTTTGCCCCCTATTGTAATATTAGGAATTGCTATACTAACTGGTTATGTGCAACTTTTTCCATGA

Protein sequence

MASNFIIGFHCSNPHFSSSSSSSSNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP

Homology

[Close]

BLAST of CsaV3_4G031920 vs. NCBI nr
Match: XP_004144634.2 (PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus] >KGN54932.1 hypothetical protein Csa_4G608080 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 1.0e-87
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE
Sbjct: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
           EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF
Sbjct: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 190

[Close]

BLAST of CsaV3_4G031920 vs. NCBI nr
Match: XP_008465443.1 (PREDICTED: uncharacterized protein LOC103503051 isoform X1 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 9.4e-78
Identity = 176/190 (92.63%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFIIGFHCSNP F  XXXXXX     KSLP KFHSRCSSSSRKFAVSESAEGRVNEE
Sbjct: 1   MASNFIIGFHCSNPPFXXXXXXXXXXXXXKSLPLKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
              XXXXXXXXXX RTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF
Sbjct: 61  XXXXXXXXXXXXXXRTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           +VPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 SVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 190

[Close]

BLAST of CsaV3_4G031920 vs. NCBI nr
Match: XP_023523373.1 (uncharacterized protein LOC111787590 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 161/190 (84.74%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFI  FHC NPH SS      NL  N SL  KFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNFITAFHCPNPHPSS-SSSYSNLQQNTSLILKFHSRCSSSSRKFAVSEGAEGRVQDE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
           E L   XXXXXX ARTQLDLLEQLSSGSQLVDGYESDG+Y +TTIRDQLAQLFRDRDDDF
Sbjct: 61  ELLISSXXXXXXSARTQLDLLEQLSSGSQLVDGYESDGNYQRTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           ++PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 189

[Close]

BLAST of CsaV3_4G031920 vs. NCBI nr
Match: XP_022981115.1 (uncharacterized protein LOC111480359 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 154/190 (81.05%), Postives = 158/190 (83.16%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFI  FHC NPH SS      NL  N  L  KFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNFITAFHCPNPHSSS--SSYSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQDE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
           E            ARTQLDLLEQLSSGSQLVDGYESDG+Y KTTIRDQLAQLFRDRDDDF
Sbjct: 61  ELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQKTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           ++PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 188

[Close]

BLAST of CsaV3_4G031920 vs. NCBI nr
Match: XP_022940302.1 (uncharacterized protein LOC111445962 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 3.7e-66
Identity = 148/178 (83.15%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASN I  FHC NP+ SS      NL  N SL  KFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNLITAFHCPNPYPSS--SSYSNLQQNTSLLLKFHSRCSSSSRKFAVSEGAEGRVQDE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
           E L  XXXXXXX ARTQLDLLEQLSSGSQLVDGYESDG+Y +TTIRDQLAQLFRDRDDDF
Sbjct: 61  ELLISXXXXXXXSARTQLDLLEQLSSGSQLVDGYESDGNYQRTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILG 179
           ++PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILG
Sbjct: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 176

[Close]

BLAST of CsaV3_4G031920 vs. TAIR10
Match: AT2G42975.1 (unknown protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 75  RTQLDLLEQLSSGSQLVDGYESDGSYGK-TTIRDQLAQLFRDRDDDFTVPLGKNLKKVSA 134
           RTQLDLLEQL+S S   DGY SDG   +  TIRDQLA L  DRDDDF++PLGKNLKKVS 
Sbjct: 74  RTQLDLLEQLTSTS---DGYLSDGGGSRGLTIRDQLAGLVGDRDDDFSIPLGKNLKKVSP 133

Query: 135 KFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 191
           KFLTISQKRNIKRQ+YLNEVSQRNDSVFFAT+GAFVILPP+VIL IAILTGYVQLFP
Sbjct: 134 KFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAILTGYVQLFP 187

[Close]

BLAST of CsaV3_4G031920 vs. TrEMBL
Match: tr|A0A0A0L2V6|A0A0A0L2V6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G608080 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 6.6e-88
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE
Sbjct: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
           EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF
Sbjct: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 190

[Close]

BLAST of CsaV3_4G031920 vs. TrEMBL
Match: tr|A0A1S3CNU3|A0A1S3CNU3_CUCME (uncharacterized protein LOC103503051 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503051 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 6.2e-78
Identity = 176/190 (92.63%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 1   MASNFIIGFHCSNPHFSSXXXXXXNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60
           MASNFIIGFHCSNP F  XXXXXX     KSLP KFHSRCSSSSRKFAVSESAEGRVNEE
Sbjct: 1   MASNFIIGFHCSNPPFXXXXXXXXXXXXXKSLPLKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  EFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120
              XXXXXXXXXX RTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF
Sbjct: 61  XXXXXXXXXXXXXXRTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180
           +VPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA
Sbjct: 121 SVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIA 180

Query: 181 ILTGYVQLFP 191
           ILTGYVQLFP
Sbjct: 181 ILTGYVQLFP 190

[Close]

BLAST of CsaV3_4G031920 vs. TrEMBL
Match: tr|A0A1S4E588|A0A1S4E588_CUCME (uncharacterized protein LOC103503051 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503051 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.5e-55
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 74  ARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSA 133
           ARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF+VPLGKNLKKVSA
Sbjct: 22  ARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFSVPLGKNLKKVSA 81

Query: 134 KFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 191
           KFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP
Sbjct: 82  KFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 138

[Close]

BLAST of CsaV3_4G031920 vs. TrEMBL
Match: tr|A0A1U8KMY9|A0A1U8KMY9_GOSHI (uncharacterized protein LOC107918745 OS=Gossypium hirsutum OX=3635 GN=LOC107918745 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.7e-49
Identity = 116/167 (69.46%), Postives = 128/167 (76.65%), Query Frame = 0


Query: 26  LLHNKSL-PFKFHSRCSSSSRK-FAVSESAEGRVNEEEFLXXXXXXXXXXARTQLDLLEQ 85
           LL++KS  PFK  S  SSS  K FA SE  EG V EE+             RTQLDLL+Q
Sbjct: 26  LLYSKSKHPFKLISSSSSSCGKTFAQSEGKEGGVKEED--PPAFSGSLSSTRTQLDLLDQ 85

Query: 86  LSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRN 145
           LSS S   DGYESDG  GK TIR+QL +L  DRDDDFT PLGKNLKKVS KFLTISQKRN
Sbjct: 86  LSSTSSTADGYESDGRSGKLTIREQLVRLVGDRDDDFTTPLGKNLKKVSPKFLTISQKRN 145

Query: 146 IKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 191
           I+RQAYLNEVSQRNDSVFFAT+GAFV++PP++ILGIAILTGYVQLFP
Sbjct: 146 IRRQAYLNEVSQRNDSVFFATIGAFVLVPPLIILGIAILTGYVQLFP 190

[Close]

BLAST of CsaV3_4G031920 vs. TrEMBL
Match: tr|A0A1J6I6W0|A0A1J6I6W0_NICAT (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_40012 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.7e-49
Identity = 111/157 (70.70%), Postives = 125/157 (79.62%), Query Frame = 0


Query: 34  FKFHSRCSSSSRKFAVSESAEGRVNEEEFLXXXXXXXXXXARTQLDLLEQLSSGSQLVDG 93
           F+  +  SSS R+ A+SE  +G V EEE            ARTQLDLL+QL+S S  V+G
Sbjct: 32  FQSQTWLSSSLRRAALSEERDGNVTEEEL--PTYSGSLSSARTQLDLLDQLTSSSSAVNG 91

Query: 94  YESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEV 153
           YESD S GK TIR QLA+L  DRDDDF++PLGKNLKKVSAKFLT+SQKRNIKRQAYLNEV
Sbjct: 92  YESDSSSGKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIKRQAYLNEV 151

Query: 154 SQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 191
           SQRNDSVFFAT+GAFVILPP+VILGIAI TGYVQLFP
Sbjct: 152 SQRNDSVFFATIGAFVILPPLVILGIAIATGYVQLFP 186

The following BLAST results are available for this feature:

BLAST of CsaV3_4G031920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144634.2	1.0e-87	100.00	PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus] >KGN54932.1 hy...	[more]
XP_008465443.1	9.4e-78	92.63	PREDICTED: uncharacterized protein LOC103503051 isoform X1 [Cucumis melo]	[more]
XP_023523373.1	2.8e-74	84.74	uncharacterized protein LOC111787590 [Cucurbita pepo subsp. pepo]	[more]
XP_022981115.1	1.1e-73	81.05	uncharacterized protein LOC111480359 [Cucurbita maxima]	[more]
XP_022940302.1	3.7e-66	83.15	uncharacterized protein LOC111445962 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G031920 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42975.1	1.1e-43	81.20	unknown protein	[more]

BLAST of CsaV3_4G031920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G031920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2V6\|A0A0A0L2V6_CUCSA	6.6e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G608080 PE=4 SV=1	[more]
tr\|A0A1S3CNU3\|A0A1S3CNU3_CUCME	6.2e-78	92.63	uncharacterized protein LOC103503051 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E588\|A0A1S4E588_CUCME	2.5e-55	99.15	uncharacterized protein LOC103503051 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U8KMY9\|A0A1U8KMY9_GOSHI	4.7e-49	69.46	uncharacterized protein LOC107918745 OS=Gossypium hirsutum OX=3635 GN=LOC1079187...	[more]
tr\|A0A1J6I6W0\|A0A1J6I6W0_NICAT	4.7e-49	70.70	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_40012 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G031920.1	CsaV3_4G031920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36742	FAMILY NOT NAMED	coord: 21..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G031920	CSPI04G21590	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G031920	Cucsa.058880	Cucumber (Gy14) v1	cgycucB045
CsaV3_4G031920	CmaCh01G013090	Cucurbita maxima (Rimu)	cmacucB0556
CsaV3_4G031920	CmoCh01G013660	Cucurbita moschata (Rifu)	cmocucB0543
CsaV3_4G031920	Cp4.1LG02g02480	Cucurbita pepo (Zucchini)	cpecucB0710
CsaV3_4G031920	CsGy4G020110	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G031920	Carg14783	Silver-seed gourd	carcucB0343
CsaV3_4G031920	Cla023232	Watermelon (97103) v1	cucwmB367
CsaV3_4G031920	MELO3C026968	Melon (DHL92) v3.5.1	cucmeB305
CsaV3_4G031920	ClCG11G016470	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G031920	Lsi04G018820	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G031920	MELO3C026968.2	Melon (DHL92) v3.6.1	cucmedB297
CsaV3_4G031920	Cla97C11G222390	Watermelon (97103) v2	cucwmbB281
CsaV3_4G031920	Bhi09G003012	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G031920	Silver-seed gourd	carcucB1093
CsaV3_4G031920	Cucurbita maxima (Rimu)	cmacucB0032
CsaV3_4G031920	Cucurbita moschata (Rifu)	cmocucB0019
CsaV3_4G031920	Cucurbita pepo (Zucchini)	cpecucB0973