Lsi04G011330 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G011330
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	hydroxyproline-rich glycoprotein family protein
Location	chr04 : 15258806 .. 15259183 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

mRNA sequence

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

Coding sequence (CDS)

ATGTTCATCCAACCCCAACCTTGTTATGCTCTCCTTATCCTCAGCTTGTTCTTGATTCTTTCAATCAATGTACAATCCACCCATGGCTTGATCTCCTCCAAGAAGCTTGACAAATCCGCCGGTGGGGACGATCCGAGCGTCAAGTGTACACCATGCACCCGTTATCCACTACCGCCACCACCTCCACCGAAGAAACCCCCACCGGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCGTCTTTCATATACATGCTCGGCCCGCCGGGAAACTTGTATCCCATCGACCAGGACTTCGCAGGGGCTGATCGGAGGAGGATGGCCGTGGAGTTGCCGATTGTTGCTCTCTTTGGACTGATTGTGTTTATTGCTTTGTGGTGA

Protein sequence

MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIVFIALW

Homology

[Close]

BLAST of Lsi04G011330 vs. TrEMBL
Match: A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-38
Identity = 92/124 (74.19%), Postives = 99/124 (79.84%), Query Frame = 1


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQP P Y+LLIL  FLILSIN+Q  HG ISSKKLD+     D SVKCTPCTRY  PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKPPP YCPPPP PPSSFIYMLGPP NLYPI+ DFA ADRR +A+ELP+VA FGLI 
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIAL 125
            IAL
Sbjct: 121 LIAL 124

[Close]

BLAST of Lsi04G011330 vs. TrEMBL
Match: A5B8N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-15
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 10  ALLILSLFLILSINVQSTHGLISSKKLDKS--AGGDDPSVKC-------TPCTRYPLPPP 69
           +L +L++FL+++      +G  +S+KLD+S  +G  D  VKC        PC + P PPP
Sbjct: 10  SLKLLTVFLVVAAIATPVNGS-NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPP 69

Query: 70  PP-----PKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVAL 125
           PP     PKKP   YCPPPPPPP+SF+Y+ GPPG LYPIDQD+ GA R  M V LPI+A 
Sbjct: 70  PPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFM-VGLPILAG 129

[Close]

BLAST of Lsi04G011330 vs. TrEMBL
Match: A0A067FBM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 1


Query: 11  LLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTP-CTRYPLPP---------- 70
           L +L++F +L+  V      + S+KLD+S G  D  +KCTP CT+ P PP          
Sbjct: 11  LKVLTIFSLLAAIVYHPVNGLESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPP 70

Query: 71  ---------PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVEL 126
                    PP PKKPP  YCPPPPPP  SFIY+ GPPGNLYP+D DF GA  +++   L
Sbjct: 71  PPPALPPPAPPAPKKPPSQYCPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSL 130

[Close]

BLAST of Lsi04G011330 vs. TrEMBL
Match: A0A059D707_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13
Identity = 63/135 (46.67%), Postives = 75/135 (55.56%), Query Frame = 1


Query: 10  ALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPPPP-----PK 69
           A L L L L+L++ +  T GL S K  D  A G   S  C PCT+ P PPPPP     P 
Sbjct: 2   ANLGLLLVLVLAVAIP-TSGLTSRKLDDTPALG---SQNCNPCTQSPPPPPPPIPCPPPP 61

Query: 70  KPPPAYCPPPP--------------PPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVEL 126
            PPP  CPPPP              PPPS +IY+ GPPG+LYPIDQ F GA  R  A   
Sbjct: 62  PPPPTPCPPPPHKKPPPCSYCPLSPPPPSGYIYITGPPGSLYPIDQGFNGAG-RSFAAGA 121

[Close]

BLAST of Lsi04G011330 vs. TrEMBL
Match: K7N0Q5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G013700 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-12
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 11  LLILSLFLILSINVQSTHGLISSKKLDKSA---GGDDPSVKCTPC--TRYPLPPPP---P 70
           +L+L+LFL+L  +  S+  ++ S+KLD++      +    KC  C  T YP PPPP   P
Sbjct: 12  ILVLNLFLVLICSTASSVNVVESRKLDETTPVPATNGTEEKCGSCGGTTYPSPPPPLLPP 71

Query: 71  PKKPPPA--------YCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGA---DRRRMAVELP 123
           P  PPP+        YC  PPPPPSSFIY+ GPPGNLYP+D++F+GA    R   AV +P
Sbjct: 72  PSPPPPSPKKTPPSQYC--PPPPPSSFIYITGPPGNLYPVDENFSGATSHHRSFAAVLMP 131

[Close]

BLAST of Lsi04G011330 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-12
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 1


Query: 26  STHGLISSKKLDKSAGGDDPSVKCTP-CTRYPLPPPPPPKKPPPAYCPPPP--------- 85
           S+   + ++KLD+     DP +KC+P C + P PP PPP  PPP  CPPPP         
Sbjct: 33  SSDASLEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKK 92

Query: 86  -------PPPSSFIYMLGPPGNLYPIDQDF-AGADRRRMAVELPIVALFGLIVFIAL 125
                  PPP++F+Y+ GPPGNLYP+D+ F A A +  M V+L  +  FG++ F+ L
Sbjct: 93  VSSYCPPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFLIL 144

[Close]

BLAST of Lsi04G011330 vs. TAIR10
Match: AT1G70990.1 (AT1G70990.1 proline-rich family protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 43  DDPSVKCTPCTR-YPLPPPPPPKKPPPAY-CPPPP------------PPPSSFIYMLGPP 102
           +DP +KCTPC +  P P PPPP  PPP+  CPPPP            PPPS++IYM GPP
Sbjct: 79  EDP-IKCTPCLQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPPSTYIYMTGPP 138

Query: 103 GNLYPIDQDFAGADRRRMAVELPIVALFGLIVF 122
           G LYPIDQ F  A    +     +V + GLI F
Sbjct: 139 GELYPIDQQFGAA----VTKSFTVVKISGLIAF 166

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: gi|700195654|gb|KGN50831.1| (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 92/124 (74.19%), Postives = 99/124 (79.84%), Query Frame = 1


Query: 1   MFIQPQPCYALLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTPCTRYPLPPP 60
           M IQP P Y+LLIL  FLILSIN+Q  HG ISSKKLD+     D SVKCTPCTRY  PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPPP 60

Query: 61  PPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVALFGLIV 120
           PPPKKPPP YCPPPP PPSSFIYMLGPP NLYPI+ DFA ADRR +A+ELP+VA FGLI 
Sbjct: 61  PPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FIAL 125
            IAL
Sbjct: 121 LIAL 124

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: gi|359472877|ref|XP_003631207.1| (PREDICTED: chitin-binding lectin 1 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-15
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 10  ALLILSLFLILSINVQSTHGLISSKKLDKS--AGGDDPSVKC-------TPCTRYPLPPP 69
           +L +L++FL+++      +G  +S+KLD+S  +G  D  VKC        PC + P PPP
Sbjct: 10  SLKLLTVFLVVAAIATPVNGS-NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPP 69

Query: 70  PP-----PKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVAL 125
           PP     PKKP   YCPPPPPPP+SF+Y+ GPPG LYPIDQD+ GA R  M V LPI+A 
Sbjct: 70  PPSPPPPPKKPRAPYCPPPPPPPASFLYVTGPPGTLYPIDQDYGGAGRNFM-VGLPILAG 129

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: gi|641845802|gb|KDO64688.1| (hypothetical protein CISIN_1g0324291mg [Citrus sinensis])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 1


Query: 11  LLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTP-CTRYPLPP---------- 70
           L +L++F +L+  V      + S+KLD+S G  D  +KCTP CT+ P PP          
Sbjct: 11  LKVLTIFSLLAAIVYHPVNGLESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPP 70

Query: 71  ---------PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVEL 126
                    PP PKKPP  YCPPPPPP  SFIY+ GPPGNLYP+D DF GA  +++   L
Sbjct: 71  PPPALPPPAPPAPKKPPSQYCPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSL 130

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: gi|568829713|ref|XP_006469163.1| (PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis])

HSP 1 Score: 85.5 bits (210), Expect = 7.2e-14
Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 1


Query: 11  LLILSLFLILSINVQSTHGLISSKKLDKSAGGDDPSVKCTP-CTRYPLPP---------- 70
           L +L++F +L+  V      + S+KLD+S G  D  +KCTP CT+ P PP          
Sbjct: 11  LKVLTIFSLLAAIVYHPVNGLESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPP 70

Query: 71  ---------PPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVEL 126
                    PP PKKPP  YCPPPPPP  SFIY+ GPPGNLYP+D DF GA  +++   L
Sbjct: 71  PPPALPPPAPPAPKKPPSQYCPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSL 130

[Close]

BLAST of Lsi04G011330 vs. NCBI nr
Match: gi|1009154979|ref|XP_015895468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK9 [Ziziphus jujuba])

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 1


Query: 12  LILSLFLILSINVQSTHGLISSKKLDK--SAGGDDPSVKCTPCTRYP--LPPPPPPKKPP 71
           ++++LF++L     +    + S+KLD+  + GG+    KC+PCT+YP   P PPPP  PP
Sbjct: 8   MVVNLFVVLIAIASTPINGLDSRKLDEVPAPGGE----KCSPCTQYPPPSPSPPPPSPPP 67

Query: 72  PAYCPPP-------------PPPPSSFIYMLGPPGNLYPIDQDFAGADRRRMAVELPIVA 121
           P   PPP             PPPPSSF+Y+ GPPGNLYP+D+DF G  ++ + + LP + 
Sbjct: 68  PPASPPPSPPSPKKPPTQYCPPPPSSFLYITGPPGNLYPVDEDFNGGTKKNLVMGLPFLV 127

The following BLAST results are available for this feature:

BLAST of Lsi04G011330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G011330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV7_CUCSA	1.0e-38	74.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1	[more]
A5B8N9_VITVI	4.5e-15	48.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=...	[more]
A0A067FBM4_CITSI	1.0e-14	44.44	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1	[more]
A0A059D707_EUCGR	5.5e-13	46.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02900 PE=4 SV=1	[more]
K7N0Q5_SOYBN	6.1e-12	43.94	Uncharacterized protein OS=Glycine max GN=GLYMA_20G013700 PE=4 SV=1	[more]

BLAST of Lsi04G011330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23040.1	2.5e-12	41.03	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	1.0e-10	48.39	proline-rich family protein	[more]

BLAST of Lsi04G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195654\|gb\|KGN50831.1\|	1.4e-38	74.19	hypothetical protein Csa_5G283490 [Cucumis sativus]	[more]
gi\|359472877\|ref\|XP_003631207.1\|	6.5e-15	48.06	PREDICTED: chitin-binding lectin 1 [Vitis vinifera]	[more]
gi\|641845802\|gb\|KDO64688.1\|	1.4e-14	44.44	hypothetical protein CISIN_1g0324291mg [Citrus sinensis]	[more]
gi\|568829713\|ref\|XP_006469163.1\|	7.2e-14	43.70	PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis]	[more]
gi\|1009154979\|ref\|XP_015895468.1\|	3.6e-13	41.27	PREDICTED: proline-rich receptor-like protein kinase PERK9 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G011330.1	Lsi04G011330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 12..125 score: 2.0
None	No IPR available	PANTHER	PTHR35094:SF1	SUBFAMILY NOT NAMED	coord: 12..125 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G011330	Csa5G283490	Cucumber (Chinese Long) v2	culsiB374
Lsi04G011330	CmoCh04G010810	Cucurbita moschata (Rifu)	cmolsiB672
Lsi04G011330	Cla011701	Watermelon (97103) v1	lsiwmB303
Lsi04G011330	ClCG07G006160	Watermelon (Charleston Gray)	lsiwcgB296
Lsi04G011330	Cla97C07G134180	Watermelon (97103) v2	lsiwmbB297
Lsi04G011330	Bhi07G000289	Wax gourd	lsiwgoB389
Lsi04G011330	Cp4.1LG01g07630	Cucurbita pepo (Zucchini)	cpelsiB361
Lsi04G011330	Carg00115	Silver-seed gourd	carlsiB610
Lsi04G011330	CsaV3_5G013410	Cucumber (Chinese Long) v3	cuclsiB388

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G011330	Cucurbita maxima (Rimu)	cmalsiB679
Lsi04G011330	Cucurbita maxima (Rimu)	cmalsiB680
Lsi04G011330	Cucurbita moschata (Rifu)	cmolsiB673
Lsi04G011330	Cucurbita pepo (Zucchini)	cpelsiB362
Lsi04G011330	Melon (DHL92) v3.5.1	lsimeB284
Lsi04G011330	Cucumber (Gy14) v2	cgyblsiB332
Lsi04G011330	Silver-seed gourd	carlsiB159