Cla97C07G134180 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G134180
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	proline-rich family protein
Location	Cla97Chr07 : 9798621 .. 9799004 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAACCCCAGCCTTGCTATGCTCTCCTCACCCTCAGCTTGTTCTTGTTCTTCATTCTTTCAAGCAATGTACAACCCATCCATTGCTTGACCTCATCCAAGAAGCTTGACGAATCCGCCGGTGGGAGTGATCCGAGCGTCAAGTGTACGCCGTGCACCAATTATCCGCCACCACCACCGCCACCGCCGAAGAAACCCCCACCAGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCATCTTTCATATACATGCTCGGCCCGCCAGGAAACTTGTATCCCATTGACCAAGATTTCGCCGGTGCTAATCGGAGGACGATGGCCGTGGAGTGGACGGTGGTTGCTCTCTTTGGACTAATTGGGTTTATTGGTTTGTGGTGA

mRNA sequence

ATGTGCATCCAACCCCAGCCTTGCTATGCTCTCCTCACCCTCAGCTTGTTCTTGTTCTTCATTCTTTCAAGCAATGTACAACCCATCCATTGCTTGACCTCATCCAAGAAGCTTGACGAATCCGCCGGTGGGAGTGATCCGAGCGTCAAGTGTACGCCGTGCACCAATTATCCGCCACCACCACCGCCACCGCCGAAGAAACCCCCACCAGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCATCTTTCATATACATGCTCGGCCCGCCAGGAAACTTGTATCCCATTGACCAAGATTTCGCCGGTGCTAATCGGAGGACGATGGCCGTGGAGTGGACGGTGGTTGCTCTCTTTGGACTAATTGGGTTTATTGGTTTGTGGTGA

Coding sequence (CDS)

ATGTGCATCCAACCCCAGCCTTGCTATGCTCTCCTCACCCTCAGCTTGTTCTTGTTCTTCATTCTTTCAAGCAATGTACAACCCATCCATTGCTTGACCTCATCCAAGAAGCTTGACGAATCCGCCGGTGGGAGTGATCCGAGCGTCAAGTGTACGCCGTGCACCAATTATCCGCCACCACCACCGCCACCGCCGAAGAAACCCCCACCAGCTTATTGCCCTCCGCCACCTCCTCCTCCGTCATCTTTCATATACATGCTCGGCCCGCCAGGAAACTTGTATCCCATTGACCAAGATTTCGCCGGTGCTAATCGGAGGACGATGGCCGTGGAGTGGACGGTGGTTGCTCTCTTTGGACTAATTGGGTTTATTGGTTTGTGGTGA

Protein sequence

MCIQPQPCYALLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCTNYPPPPPPPPKKPPPAYCPPPPPPPSSFIYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGLIGFIGLW

Homology

[Close]

BLAST of Cla97C07G134180 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MCIQPQPCYALLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCTNYXXX 60
           MCIQ +P YAL   S F+FF LS NV   H   SSKKLDES GG DPSVKCTPCT+ XXX
Sbjct: 1   MCIQTRPRYALFIFSFFIFF-LSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGL 120
           XXXXXXXXXXXXXXXXXXXXXXXXY+LGPPGNLYPID+DFAGA+RR +AVE + VALFGL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGL 120

Query: 121 IGFIGL 127
           IGF+G+
Sbjct: 121 IGFLGV 125

[Close]

BLAST of Cla97C07G134180 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-23
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MCIQPQPCYALLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCTNYXXX 60
           MCIQP P Y+LL L  FL  ILS N+QPIH   SSKKLDE     D SVKCTPCT Y XX
Sbjct: 1   MCIQPHPFYSLLILHFFL--ILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGL 120
           XXXXXXXXXXXXXXXXXXXXXXX YMLGPP NLYPI+ DFA A+RR++A+E  VVA FGL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGL 120

Query: 121 IGFIGL 127
           IG I L
Sbjct: 121 IGLIAL 124

[Close]

BLAST of Cla97C07G134180 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-16
Identity = 87/117 (74.36%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 13  TLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCTNY--XXXXXXXXXXXXX 72
           T  L L  ILS NV  IH L SS KLD S GG D +VKCTPCT Y  XXXXXXXXXXXXX
Sbjct: 5   TQILNLLLILSINVVTIHGLISSNKLDGSTGG-DSTVKCTPCTRYNXXXXXXXXXXXXXX 64

Query: 73  XXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGLIGFIGLW 128
           XXXXXXXXXXXXXXYMLGPPGNLYPI QDFAG  RR +AVE  VVAL GL+GFI +W
Sbjct: 65  XXXXXXXXXXXXXXYMLGPPGNLYPIGQDFAGGRRR-VAVELPVVALLGLMGFIAVW 119

[Close]

BLAST of Cla97C07G134180 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 85  YMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGLIGFIGL 127
           Y+LGPPGNLYPID+DFAGA+RR +AVE + VALFGLIGF+G+
Sbjct: 84  YILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 125

[Close]

BLAST of Cla97C07G134180 vs. NCBI nr
Match: XP_021593887.1 (leucine-rich repeat extensin-like protein 6 [Manihot esculenta] >OAY29220.1 hypothetical protein MANES_15G127400 [Manihot esculenta])

HSP 1 Score: 56.2 bits (134), Expect = 9.2e-05
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 11  LLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCT----------NYXXX 70
           L +L L  FF+L +   PI  L  S+KLDE+        KCTPCT            XXX
Sbjct: 4   LESLMLLNFFLLVAAAPPIQAL-DSRKLDENTAPGSTDQKCTPCTXXXXXXXXXXXXXXX 63

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGL 125
           XXXXXXXXXXXXXXXXXXXXXXX Y+ GPPGNLYP+D DF+GA R T+A    ++   GL
Sbjct: 64  XXXXXXXXXXXXXXXXXXXXXXXIYISGPPGNLYPVDNDFSGAGRTTVAGLPALIGC-GL 123

[Close]

BLAST of Cla97C07G134180 vs. TrEMBL
Match: tr|A0A0A0KSV7|A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-23
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MCIQPQPCYALLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCTNYXXX 60
           MCIQP P Y+LL L  FL  ILS N+QPIH   SSKKLDE     D SVKCTPCT Y XX
Sbjct: 1   MCIQPHPFYSLLILHFFL--ILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGL 120
           XXXXXXXXXXXXXXXXXXXXXXX YMLGPP NLYPI+ DFA A+RR++A+E  VVA FGL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGL 120

Query: 121 IGFIGL 127
           IG I L
Sbjct: 121 IGLIAL 124

[Close]

BLAST of Cla97C07G134180 vs. TrEMBL
Match: tr|A0A2C9UFM0|A0A2C9UFM0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.1e-05
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 11  LLTLSLFLFFILSSNVQPIHCLTSSKKLDESAGGSDPSVKCTPCT----------NYXXX 70
           L +L L  FF+L +   PI  L  S+KLDE+        KCTPCT            XXX
Sbjct: 4   LESLMLLNFFLLVAAAPPIQAL-DSRKLDENTAPGSTDQKCTPCTXXXXXXXXXXXXXXX 63

Query: 71  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGL 125
           XXXXXXXXXXXXXXXXXXXXXXX Y+ GPPGNLYP+D DF+GA R T+A    ++   GL
Sbjct: 64  XXXXXXXXXXXXXXXXXXXXXXXIYISGPPGNLYPVDNDFSGAGRTTVAGLPALIGC-GL 123

[Close]

BLAST of Cla97C07G134180 vs. TAIR10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 85  YMLGPPGNLYPIDQDF-AGANRRTMAVEWTVVALFGLIGFI 125
           Y+ GPPGNLYP+D+ F A A +  M V+ + +  FG++ F+
Sbjct: 102 YITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of Cla97C07G134180 vs. TAIR10
Match: AT1G70990.1 (proline-rich family protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = 0


Query: 85  YMLGPPGNLYPIDQDFAGANRRTMAVEWTVVALFGLIGF 124
           YM GPPG LYPIDQ F  A    +   +TVV + GLI F
Sbjct: 132 YMTGPPGELYPIDQQFGAA----VTKSFTVVKISGLIAF 166

The following BLAST results are available for this feature:

BLAST of Cla97C07G134180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546806.1	1.9e-26	76.19	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
KGN50831.1	5.8e-23	72.22	hypothetical protein Csa_5G283490 [Cucumis sativus]	[more]
XP_022155381.1	3.1e-16	74.36	acrosin-like [Momordica charantia]	[more]
XP_022942055.1	1.2e-09	76.19	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
XP_021593887.1	9.2e-05	53.23	leucine-rich repeat extensin-like protein 6 [Manihot esculenta] >OAY29220.1 hypo...	[more]

BLAST of Cla97C07G134180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSV7\|A0A0A0KSV7_CUCSA	3.8e-23	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
tr\|A0A2C9UFM0\|A0A2C9UFM0_MANES	6.1e-05	53.23	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=...	[more]

BLAST of Cla97C07G134180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G134180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23040.1	1.9e-04	43.90	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	3.3e-04	53.85	proline-rich family protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G134180.1	Cla97C07G134180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..74
None	No IPR available	PANTHER	PTHR35094:SF1	SUBFAMILY NOT NAMED	coord: 7..125
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 7..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G134180	Cla011701	Watermelon (97103) v1	wmwmbB170
Cla97C07G134180	ClCG07G006160	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G134180	CmoCh04G010810	Cucurbita moschata (Rifu)	cmowmbB754
Cla97C07G134180	Lsi04G011330	Bottle gourd (USVL1VR-Ls)	lsiwmbB297
Cla97C07G134180	Carg00115	Silver-seed gourd	carwmbB0700
Cla97C07G134180	CsaV3_5G013410	Cucumber (Chinese Long) v3	cucwmbB408
Cla97C07G134180	Bhi07G000289	Wax gourd	wgowmbB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G134180	Silver-seed gourd	carwmbB0183
Cla97C07G134180	Cucumber (Gy14) v2	cgybwmbB376
Cla97C07G134180	Cucurbita maxima (Rimu)	cmawmbB779
Cla97C07G134180	Cucurbita maxima (Rimu)	cmawmbB780
Cla97C07G134180	Cucurbita maxima (Rimu)	cmawmbB781
Cla97C07G134180	Cucurbita moschata (Rifu)	cmowmbB753
Cla97C07G134180	Cucurbita moschata (Rifu)	cmowmbB755
Cla97C07G134180	Melon (DHL92) v3.5.1	mewmbB032
Cla97C07G134180	Melon (DHL92) v3.5.1	mewmbB067
Cla97C07G134180	Watermelon (Charleston Gray)	wcgwmbB120
Cla97C07G134180	Watermelon (97103) v1	wmwmbB278
Cla97C07G134180	Watermelon (97103) v1	wmwmbB180
Cla97C07G134180	Watermelon (97103) v1	wmwmbB181
Cla97C07G134180	Wax gourd	wgowmbB105