CmoCh04G010810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G010810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionhydroxyproline-rich glycoprotein family protein
LocationCmo_Chr04 : 5448107 .. 5448484 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCCTCAGCTTCTTCTTCTTCTTTCTTTCAACCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCTCCACCGCCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA
Homology
[Close]
BLAST of CmoCh04G010810 vs. TrEMBL
Match: A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.7e-34
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = 1 

Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L IL FF   LS N+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]
BLAST of CmoCh04G010810 vs. TrEMBL
Match: A5B8N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 33  SSKKLDES--TGGDDPSVKC-------TPCTHNPPPPPPP-----PKKPSPAYCPPPPPP 92
           +S+KLDES  +G  D  VKC        PC  +PPPPPPP     PKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 93  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 124
           P+SF+Y+ GPPG LYPID+D+ GA  R   V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAG-RNFMVGLPILAGCGLLNLL 134

[Close]
BLAST of CmoCh04G010810 vs. TrEMBL
Match: A0A067FBM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++GFL +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGFLAL 139

[Close]
BLAST of CmoCh04G010810 vs. TrEMBL
Match: A0A087HQJ0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G251500 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 58/133 (43.61%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 14  LSFFFFF-----LSTNVVLTHGFLSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPPKKP 73
           ++ FFFF     L T  ++T+   +S+KLDE     DP +KC+P C  NPPPP PPP  P
Sbjct: 9   VAVFFFFTVMITLLTCPIITNASSASRKLDEV----DP-IKCSPSCVQNPPPPSPPPPSP 68

Query: 74  SPAYCPPPP----------------PPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVE 124
            P  CPPPP                PPP++F+YI GPPGNLYP+D  F A A +    V+
Sbjct: 69  PPPSCPPPPALPPPPPKKVGPYCPPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFTVVK 128

[Close]
BLAST of CmoCh04G010810 vs. TrEMBL
Match: A0A061E8H1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010859 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-12
Identity = 57/112 (50.89%), Postives = 63/112 (56.25%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPP------------------KKPSPAYC 91
           L S+KLDES    DP VKC P C  +PPPP PPP                  KKP   YC
Sbjct: 57  LESRKLDESIAPGDPGVKCNPSCIPSPPPPSPPPPSPPPPCPPPPELPPPTPKKPPTKYC 116

Query: 92  PPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI-GFL 124
           PPPP PPS FIYI GPPG+LYP+D+DF GA R         V L GL+ GFL
Sbjct: 117 PPPPSPPS-FIYITGPPGSLYPVDQDFGGASRN------LEVGLLGLVCGFL 161

[Close]
BLAST of CmoCh04G010810 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPPKKPSPAYCPPPP-------------- 91
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPPPP              
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 92  --PPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
             PPP++F+YI GPPGNLYP+D  F A A +  + V+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]
BLAST of CmoCh04G010810 vs. TAIR10
Match: AT1G70990.1 (AT1G70990.1 proline-rich family protein)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-12
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1 

Query: 21  LSTNVVLTHGFLSSKKLDESTGG--DDPSVKCTPCTHN-PPPPPPPPKKPSPAY-CPPPP 80
           L+T V LT   + +   D ST    ++  +KCTPC  N PPP PPPP  P P+  CPPPP
Sbjct: 54  LTTVVFLTFPMIINAS-DSSTNRKLEEDPIKCTPCLQNIPPPSPPPPSPPPPSQACPPPP 113

Query: 81  ------------PPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
                       PPPS++IY+ GPPG LYPID+ F A   +    V++S +  FG++ FL
Sbjct: 114 LPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVVKISGLIAFGVMSFL 172

[Close]
BLAST of CmoCh04G010810 vs. NCBI nr
Match: gi|700195654|gb|KGN50831.1| (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33
Identity = 84/125 (67.20%), Postives = 92/125 (73.60%), Query Frame = 1 

Query: 1   MCIQTRPRYALFILSFFFFFLSTNVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L IL FF   LS N+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]
BLAST of CmoCh04G010810 vs. NCBI nr
Match: gi|359472877|ref|XP_003631207.1| (PREDICTED: chitin-binding lectin 1 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 33  SSKKLDES--TGGDDPSVKC-------TPCTHNPPPPPPP-----PKKPSPAYCPPPPPP 92
           +S+KLDES  +G  D  VKC        PC  +PPPPPPP     PKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 93  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 124
           P+SF+Y+ GPPG LYPID+D+ GA  R   V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAG-RNFMVGLPILAGCGLLNLL 134

[Close]
BLAST of CmoCh04G010810 vs. NCBI nr
Match: gi|641845802|gb|KDO64688.1| (hypothetical protein CISIN_1g0324291mg [Citrus sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++GFL +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGFLAL 139

[Close]
BLAST of CmoCh04G010810 vs. NCBI nr
Match: gi|568829713|ref|XP_006469163.1| (PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++G L +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGLLAL 139

[Close]
BLAST of CmoCh04G010810 vs. NCBI nr
Match: gi|729394417|ref|XP_010552717.1| (PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Tarenaya hassleriana])

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-13
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 44  DDPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPP--------------PPPSSFIYILGPP 103
           D+  +KCTPC  +PPPP PPP  P P  CPPPP              PPP SF+YI GPP
Sbjct: 31  DEDPIKCTPCLQSPPPPSPPPPSPPPPSCPPPPALPPPPPKKSGPNCPPPPSFLYITGPP 90

Query: 104 GNLYPIDRDFAG-ADRRRVAVELSAVALFGLIGF 123
           GNLYP+D++F G A +   AV+LSA+  FG++ F
Sbjct: 91  GNLYPVDQEFGGAAGKSSTAVKLSALLAFGVLAF 124

The following BLAST results are available for this feature:
BLAST of CmoCh04G010810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G010810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSV7_CUCSA9.7e-3467.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1[more]
A5B8N9_VITVI1.7e-1452.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=... [more]
A0A067FBM4_CITSI2.3e-1450.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1[more]
A0A087HQJ0_ARAAL2.1e-1243.61Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G251500 PE=4 SV=1[more]
A0A061E8H1_THECC2.8e-1250.89Uncharacterized protein OS=Theobroma cacao GN=TCM_010859 PE=4 SV=1[more]
BLAST of CmoCh04G010810 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23040.11.2e-1446.36 hydroxyproline-rich glycoprotein family protein[more]
AT1G70990.12.5e-1242.50 proline-rich family protein[more]
BLAST of CmoCh04G010810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195654|gb|KGN50831.1|1.4e-3367.20hypothetical protein Csa_5G283490 [Cucumis sativus][more]
gi|359472877|ref|XP_003631207.1|2.5e-1452.38PREDICTED: chitin-binding lectin 1 [Vitis vinifera][more]
gi|641845802|gb|KDO64688.1|3.2e-1450.00hypothetical protein CISIN_1g0324291mg [Citrus sinensis][more]
gi|568829713|ref|XP_006469163.1|1.6e-1349.12PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis][more]
gi|729394417|ref|XP_010552717.1|2.7e-1350.00PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Tarenaya hasslerian... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G010810.1CmoCh04G010810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 3..123
score: 3.8
NoneNo IPR availablePANTHERPTHR35094:SF1SUBFAMILY NOT NAMEDcoord: 3..123
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G010810Cla011701Watermelon (97103) v1cmowmB689
CmoCh04G010810ClCG07G006160Watermelon (Charleston Gray)cmowcgB675
CmoCh04G010810Lsi04G011330Bottle gourd (USVL1VR-Ls)cmolsiB672
CmoCh04G010810Cp4.1LG01g07630Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G010810CsaV3_5G013410Cucumber (Chinese Long) v3cmocucB0881
CmoCh04G010810Cla97C07G134180Watermelon (97103) v2cmowmbB754
CmoCh04G010810Bhi07G000289Wax gourdcmowgoB0888
CmoCh04G010810Carg00115Silver-seed gourdcarcmoB0923
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G010810Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G010810Cucumber (Gy14) v2cgybcmoB658
CmoCh04G010810Melon (DHL92) v3.6.1cmomedB726
CmoCh04G010810Silver-seed gourdcarcmoB0251
CmoCh04G010810Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G010810Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G010810Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G010810Melon (DHL92) v3.5.1cmomeB637
CmoCh04G010810Melon (DHL92) v3.5.1cmomeB651