Cp4.1LG01g07630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5414134 .. 5414511 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTCATCTTCTTTCTCTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGCGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCACCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCGCCTCCTCCGTCGTCTTTCATATACATACTCGGCCCCCCTGGAAACTTGTATCCCATTGACCGGGACTTCGCCGGTGCTGATCGAAGGAGGGTAGCCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV
Homology
[Close]
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match: A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-34
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 1 

Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L I  FF+  LSIN+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match: A5B8N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 33  SSKKLDES--TGGDDPSVKC-------TPCTHNPPPPPPP-----PKKPSPAYCPPPPPP 92
           +S+KLDES  +G  D  VKC        PC  +PPPPPPP     PKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 93  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 124
           P+SF+Y+ GPPG LYPID+D+ GA  R   V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAG-RNFMVGLPILAGCGLLNLL 134

[Close]
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match: A0A067FBM4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++GFL +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGFLAL 139

[Close]
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match: A0A0D2NDR7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 59/122 (48.36%), Postives = 68/122 (55.74%), Query Frame = 1 

Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTP-CTHNPPP 60
           M I+T   + LF+F   I FL   V      L S+KLDEST   D  +KCTP C  +PPP
Sbjct: 1   MSIKTNHFHPLFLF-LTISFLIATVAYPIDALESRKLDESTVPGDQGIKCTPSCVQSPPP 60

Query: 61  PPPPPKKPSPA----------------YCPPPPPPPSSFIYILGPPGNLYPIDRDFAGAD 106
           P PPP  P P                 YCPPPP PPS FIYI GPPGNLYPID++F  A 
Sbjct: 61  PSPPPPCPPPPSPPALPPPTPKKSPSQYCPPPPSPPS-FIYITGPPGNLYPIDQNFGAAS 120

[Close]
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match: B9SJ44_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0842980 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-12
Identity = 57/135 (42.22%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDES--TGGDDPSVKCTPCTHNPP 60
           M ++ R   ++ + ++F+  L I+       L S+KLDE+          KCTPC   PP
Sbjct: 1   MSLKFRCLDSMMLLNYFLLVLIISCAAPTLGLDSRKLDETPTVPAGPTDEKCTPCNPTPP 60

Query: 61  PPPPP-------------PKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRR 120
           PPPPP             PKKP  +YCPPPPP   SFIYI GPPGNLYPID D++ A R 
Sbjct: 61  PPPPPSPCPPPPALPPPSPKKPPSSYCPPPPP---SFIYITGPPGNLYPIDNDYSDAGRV 120

[Close]
BLAST of Cp4.1LG01g07630 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPPPPPPKKPSPAYCPPPP-------------- 91
           L ++KLDE     DP +KC+P C  NPPPP PPP  P P  CPPPP              
Sbjct: 38  LEARKLDEV----DP-IKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYC 97

Query: 92  --PPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIGFL 124
             PPP++F+YI GPPGNLYP+D  F A A +  + V+LS +  FG++ FL
Sbjct: 98  PPPPPANFLYITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]
BLAST of Cp4.1LG01g07630 vs. TAIR10
Match: AT1G70990.1 (AT1G70990.1 proline-rich family protein)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-12
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1 

Query: 18  IFFLSINVVLTHGFLSS-KKLDESTGGDDPSVKCTPCTHN-PPPPPPPPKKPSPAY-CPP 77
           + FL+  +++     S+ +KL+E     DP +KCTPC  N PPP PPPP  P P+  CPP
Sbjct: 57  VVFLTFPMIINASDSSTNRKLEE-----DP-IKCTPCLQNIPPPSPPPPSPPPPSQACPP 116

Query: 78  PP------------PPPSSFIYILGPPGNLYPIDRDF-AGADRRRVAVELSAVALFGLIG 124
           PP            PPPS++IY+ GPPG LYPID+ F A   +    V++S +  FG++ 
Sbjct: 117 PPLPPSPPKKSYCPPPPSTYIYMTGPPGELYPIDQQFGAAVTKSFTVVKISGLIAFGVMS 172

[Close]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: gi|700195654|gb|KGN50831.1| (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 6.3e-34
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 1 

Query: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHNPPPP 60
           MCIQ  P Y+L I  FF+  LSIN+   HGF+SSKKLDE     D SVKCTPCT   PPP
Sbjct: 1   MCIQPHPFYSLLILHFFLI-LSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSPPP 60

Query: 61  PPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120
           PPPPKKP P YCPPPP PPSSFIY+LGPP NLYPI+ DFA ADRR VA+EL  VA FGLI
Sbjct: 61  PPPPKKPPPIYCPPPPLPPSSFIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLI 120

Query: 121 GFLGV 126
           G + +
Sbjct: 121 GLIAL 124

[Close]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: gi|359472877|ref|XP_003631207.1| (PREDICTED: chitin-binding lectin 1 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 1 

Query: 33  SSKKLDES--TGGDDPSVKC-------TPCTHNPPPPPPP-----PKKPSPAYCPPPPPP 92
           +S+KLDES  +G  D  VKC        PC  +PPPPPPP     PKKP   YCPPPPPP
Sbjct: 31  NSRKLDESPASGSPDAGVKCGGCSSCQNPCNQSPPPPPPPSPPPPPKKPRAPYCPPPPPP 90

Query: 93  PSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFL 124
           P+SF+Y+ GPPG LYPID+D+ GA  R   V L  +A  GL+  L
Sbjct: 91  PASFLYVTGPPGTLYPIDQDYGGAG-RNFMVGLPILAGCGLLNLL 134

[Close]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: gi|641845802|gb|KDO64688.1| (hypothetical protein CISIN_1g0324291mg [Citrus sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-14
Identity = 57/114 (50.00%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++GFL +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGFLAL 139

[Close]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: gi|568829713|ref|XP_006469163.1| (PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 56/114 (49.12%), Postives = 67/114 (58.77%), Query Frame = 1 

Query: 32  LSSKKLDESTGGDDPSVKCTP-CTHNPPPP-------------------PPPPKKPSPAY 91
           L S+KLDESTG  D  +KCTP CT +PPPP                   PP PKKP   Y
Sbjct: 31  LESRKLDESTG--DQGIKCTPSCTQSPPPPSPSPPPPYPPPPPALPPPAPPAPKKPPSQY 90

Query: 92  CPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 126
           CPPPPPP  SFIYI GPPGNLYP+D DF GA  +++   L  +   G++G L +
Sbjct: 91  CPPPPPP--SFIYITGPPGNLYPVDSDFNGAS-KKIPSSLPLLVASGILGLLAL 139

[Close]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match: gi|729394417|ref|XP_010552717.1| (PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Tarenaya hassleriana])

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-13
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 44  DDPSVKCTPCTHNPPPPPPPPKKPSPAYCPPPP--------------PPPSSFIYILGPP 103
           D+  +KCTPC  +PPPP PPP  P P  CPPPP              PPP SF+YI GPP
Sbjct: 31  DEDPIKCTPCLQSPPPPSPPPPSPPPPSCPPPPALPPPPPKKSGPNCPPPPSFLYITGPP 90

Query: 104 GNLYPIDRDFAG-ADRRRVAVELSAVALFGLIGF 123
           GNLYP+D++F G A +   AV+LSA+  FG++ F
Sbjct: 91  GNLYPVDQEFGGAAGKSSTAVKLSALLAFGVLAF 124

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSV7_CUCSA4.4e-3467.20Uncharacterized protein OS=Cucumis sativus GN=Csa_5G283490 PE=4 SV=1[more]
A5B8N9_VITVI1.7e-1452.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04830 PE=4 SV=... [more]
A0A067FBM4_CITSI2.3e-1450.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0324291mg PE=4 SV=1[more]
A0A0D2NDR7_GOSRA1.2e-1248.36Uncharacterized protein OS=Gossypium raimondii GN=B456_005G162200 PE=4 SV=1[more]
B9SJ44_RICCO1.6e-1242.22Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0842980 PE=4 SV=1[more]
BLAST of Cp4.1LG01g07630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23040.11.2e-1446.36 hydroxyproline-rich glycoprotein family protein[more]
AT1G70990.15.5e-1241.80 proline-rich family protein[more]
BLAST of Cp4.1LG01g07630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195654|gb|KGN50831.1|6.3e-3467.20hypothetical protein Csa_5G283490 [Cucumis sativus][more]
gi|359472877|ref|XP_003631207.1|2.5e-1452.38PREDICTED: chitin-binding lectin 1 [Vitis vinifera][more]
gi|641845802|gb|KDO64688.1|3.2e-1450.00hypothetical protein CISIN_1g0324291mg [Citrus sinensis][more]
gi|568829713|ref|XP_006469163.1|1.6e-1349.12PREDICTED: sulfated surface glycoprotein 185-like [Citrus sinensis][more]
gi|729394417|ref|XP_010552717.1|2.7e-1350.00PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Tarenaya hasslerian... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07630.1Cp4.1LG01g07630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 3..123
score: 5.2
NoneNo IPR availablePANTHERPTHR35094:SF1SUBFAMILY NOT NAMEDcoord: 3..123
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g07630CmoCh04G010810Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07630Cla011701Watermelon (97103) v1cpewmB423
Cp4.1LG01g07630Csa5G283490Cucumber (Chinese Long) v2cpecuB429
Cp4.1LG01g07630ClCG07G006160Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g07630CSPI05G12290Wild cucumber (PI 183967)cpecpiB436
Cp4.1LG01g07630Lsi04G011330Bottle gourd (USVL1VR-Ls)cpelsiB361
Cp4.1LG01g07630CsaV3_5G013410Cucumber (Chinese Long) v3cpecucB0548
Cp4.1LG01g07630Bhi07G000289Wax gourdcpewgoB0553
Cp4.1LG01g07630Carg00115Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07630Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g07630Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g07630Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g07630Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g07630Melon (DHL92) v3.5.1cpemeB368
Cp4.1LG01g07630Melon (DHL92) v3.5.1cpemeB383
Cp4.1LG01g07630Cucumber (Gy14) v2cgybcpeB652
Cp4.1LG01g07630Melon (DHL92) v3.6.1cpemedB428
Cp4.1LG01g07630Silver-seed gourdcarcpeB0259