Carg00115 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00115
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	hydroxyproline-rich glycoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_001 : 580212 .. 580586 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

mRNA sequence

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Coding sequence (CDS)

ATGTGCATCCAAACGAGGCCTCGTTATGCTCTGTTCATCTTCAGCTTCTTATTCGTTCTTTCAATCAATGTAGTACTCACCCATGGCTTCCTCTCTTCCAAGAAGCTTGATGAATCCACCGGCGGGGACGATCCCAGAGTCAAGTGTACACCCTGCACCCATAATCCGCCACCCCCACCGCCCCCACCGAAGAAACCGTCACCGGCCTACTGCCCTCCGCCACCACCTCCTCCGTCGTCTTTCATTTACATACTCGGCCCCCCCGGAAACTTGTATCCCATTGACCGGGATTTCGCCGGTGCTGATCGAAGGAGGGTAGTCGTGGAGTTGTCGGCGGTTGCTCTCTTTGGATTGATTGGTTTTCTTGGAGTTTGA

Protein sequence

MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHNPPPPPPPPKKPSPAYCPPPPPPPSSFIYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFLGV

Homology

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BLAST of Carg00115 vs. NCBI nr
Match: XP_023546806.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 120/125 (96.00%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFS-FLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHXXXXX 60
           MCIQTRPRYALFIFS F+F LSINVVLTHGFLSSKKLDESTGGDDP VKCTPCTHXXXXX
Sbjct: 1   MCIQTRPRYALFIFSFFIFFLSINVVLTHGFLSSKKLDESTGGDDPSVKCTPCTHXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLI 120
           XXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLI 120

Query: 121 GFLGV 125
           GFLGV
Sbjct: 121 GFLGV 125

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BLAST of Carg00115 vs. NCBI nr
Match: KGN50831.1 (hypothetical protein Csa_5G283490 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 9.0e-21
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHXXXXXX 60
           MCIQ  P Y+L I  F  +LSIN+   HGF+SSKKLDE     D  VKCTPCT   XXXX
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           XXXXXXXXXXXXXXXXXXXXX Y+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FLGV 125
            + +
Sbjct: 121 LIAL 124

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BLAST of Carg00115 vs. NCBI nr
Match: XP_022155381.1 (acrosin-like [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 89/126 (70.63%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCT--HXXXX 60
           M IQT+      I + L +LSINVV  HG +SS KLD STGGD   VKCTPCT  +XXXX
Sbjct: 1   MWIQTQ------ILNLLLILSINVVTIHGLISSNKLDGSTGGDS-TVKCTPCTRYNXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGL 120
           XXXXXXXXXXXXXXXXXXXXXXXXY+LGPPGNLYPI +DFAG  RRRV VEL  VAL GL
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXYMLGPPGNLYPIGQDFAGG-RRRVAVELPVVALLGL 118

Query: 121 IGFLGV 125
           +GF+ V
Sbjct: 121 MGFIAV 118

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BLAST of Carg00115 vs. NCBI nr
Match: XP_022942055.1 (probable glycosyltransferase 4 [Cucurbita moschata])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 83  YILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFLGV 125
           YILGPPGNLYPIDRDFAGADRRRV VELSAVALFGLIGFLGV
Sbjct: 84  YILGPPGNLYPIDRDFAGADRRRVAVELSAVALFGLIGFLGV 125

[Close]

BLAST of Carg00115 vs. NCBI nr
Match: XP_021593887.1 (leucine-rich repeat extensin-like protein 6 [Manihot esculenta] >OAY29220.1 hypothetical protein MANES_15G127400 [Manihot esculenta])

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-04
Identity = 63/102 (61.76%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 31  LSSKKLDESTGGDDPRVKCTPCT----------HXXXXXXXXXXXXXXXXXXXXXXXXXX 90
           L S+KLDE+T       KCTPCT           XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 25  LDSRKLDENTAPGSTDQKCTPCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 84

Query: 91  XXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFL 123
           X YI GPPGNLYP+D DF+GA  R  V  L A+   GL+ FL
Sbjct: 85  XIYISGPPGNLYPVDNDFSGAG-RTTVAGLPALIGCGLLAFL 125

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BLAST of Carg00115 vs. TAIR10
Match: AT1G23040.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.6e-06
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 83  YILGPPGNLYPIDRDF-AGADRRRVVVELSAVALFGLIGFL 123
           YI GPPGNLYP+D  F A A +  +VV+LS +  FG++ FL
Sbjct: 102 YITGPPGNLYPVDEQFGAAAGKSFMVVKLSGLIAFGIMAFL 142

[Close]

BLAST of Carg00115 vs. TAIR10
Match: AT1G70990.1 (proline-rich family protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.2e-04
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 83  YILGPPGNLYPIDRDF-AGADRRRVVVELSAVALFGLIGFL 123
           Y+ GPPG LYPID+ F A   +   VV++S +  FG++ FL
Sbjct: 132 YMTGPPGELYPIDQQFGAAVTKSFTVVKISGLIAFGVMSFL 172

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BLAST of Carg00115 vs. TrEMBL
Match: tr|A0A0A0KSV7|A0A0A0KSV7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-21
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 0


Query: 1   MCIQTRPRYALFIFSFLFVLSINVVLTHGFLSSKKLDESTGGDDPRVKCTPCTHXXXXXX 60
           MCIQ  P Y+L I  F  +LSIN+   HGF+SSKKLDE     D  VKCTPCT   XXXX
Sbjct: 1   MCIQPHPFYSLLILHFFLILSINLQPIHGFISSKKLDEPIPRHDSSVKCTPCTRYSXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIG 120
           XXXXXXXXXXXXXXXXXXXXX Y+LGPP NLYPI+ DFA ADRR V +EL  VA FGLIG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIYMLGPPVNLYPIEHDFASADRRSVAMELPVVAFFGLIG 120

Query: 121 FLGV 125
            + +
Sbjct: 121 LIAL 124

[Close]

BLAST of Carg00115 vs. TrEMBL
Match: tr|A0A2C9UFM0|A0A2C9UFM0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 63/102 (61.76%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 31  LSSKKLDESTGGDDPRVKCTPCT----------HXXXXXXXXXXXXXXXXXXXXXXXXXX 90
           L S+KLDE+T       KCTPCT           XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 25  LDSRKLDENTAPGSTDQKCTPCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 84

Query: 91  XXYILGPPGNLYPIDRDFAGADRRRVVVELSAVALFGLIGFL 123
           X YI GPPGNLYP+D DF+GA  R  V  L A+   GL+ FL
Sbjct: 85  XIYISGPPGNLYPVDNDFSGAG-RTTVAGLPALIGCGLLAFL 125

The following BLAST results are available for this feature:

BLAST of Carg00115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546806.1	1.3e-40	96.00	formin-like protein 20 [Cucurbita pepo subsp. pepo]	[more]
KGN50831.1	9.0e-21	66.94	hypothetical protein Csa_5G283490 [Cucumis sativus]	[more]
XP_022155381.1	1.0e-16	70.63	acrosin-like [Momordica charantia]	[more]
XP_022942055.1	1.4e-13	97.62	probable glycosyltransferase 4 [Cucurbita moschata]	[more]
XP_021593887.1	5.8e-04	61.76	leucine-rich repeat extensin-like protein 6 [Manihot esculenta] >OAY29220.1 hypo...	[more]

BLAST of Carg00115 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23040.1	7.6e-06	53.66	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70990.1	4.2e-04	46.34	proline-rich family protein	[more]

BLAST of Carg00115 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00115 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSV7\|A0A0A0KSV7_CUCSA	5.9e-21	66.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283490 PE=4 SV=1	[more]
tr\|A0A2C9UFM0\|A0A2C9UFM0_MANES	3.9e-04	61.76	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G127400 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00115-RA	Carg00115-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..73
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 3..122
None	No IPR available	PANTHER	PTHR35094:SF1	SUBFAMILY NOT NAMED	coord: 3..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00115	Cla011701	Watermelon (97103) v1	carwmB0668
Carg00115	ClCG07G006160	Watermelon (Charleston Gray)	carwcgB0651
Carg00115	CmoCh04G010810	Cucurbita moschata (Rifu)	carcmoB0923
Carg00115	Lsi04G011330	Bottle gourd (USVL1VR-Ls)	carlsiB610
Carg00115	Cp4.1LG01g07630	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00115	CsaV3_5G013410	Cucumber (Chinese Long) v3	carcucB0709
Carg00115	Cla97C07G134180	Watermelon (97103) v2	carwmbB0700
Carg00115	Bhi07G000289	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00115	Silver-seed gourd	carcarB214
Carg00115	Cucumber (Gy14) v2	carcgybB0671
Carg00115	Cucurbita maxima (Rimu)	carcmaB0948
Carg00115	Cucurbita maxima (Rimu)	carcmaB0949
Carg00115	Cucurbita moschata (Rifu)	carcmoB0924
Carg00115	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00115	Wild cucumber (PI 183967)	carcpiB0704
Carg00115	Cucumber (Chinese Long) v2	carcuB0692
Carg00115	Cucumber (Chinese Long) v3	carcucB0705
Carg00115	Melon (DHL92) v3.5.1	carmeB0657
Carg00115	Melon (DHL92) v3.5.1	carmeB0662
Carg00115	Melon (DHL92) v3.6.1	carmedB0667