Lsi04G005990 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGCCCTCTCTGTCGCTCCATTGAATAATATTTTAACTTCCACTGCTAAATTGCAGTCCAGCTTTTTGAAGGAAACTTCTGCTTTCATTTCAACAATTCTAGGGGGTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTGACATTTCTTTTCTATCTCTGTCTCTCTCTCGAAAGGGGATGAAGTTTTGTAATATCATCACTTTTCCTTTATGTATTTGTAGTGTATAATGAAAGATGAGGGATAGTGGAATTGTTTCTTTTTTCTGTTTTTTCAAATAAATCGTTTTCTGTTCTATTAAGAGCTCCTAGGCAAACTAAAAGTGCCCAAAAAGACCGATTTAGAATTCAAAAAGATTTTGAAGGGTTTCTCTGTTCCTATCAGTCATTAAACTCATTGGAGTTGAGAGAGACTAGGAATAGGAAAAGTAGTGGAAGAAGAAGCACAAAACTGAGTTAATTAGTAAAAGCAAGCAGCTTTAAAATTCTTAGAGCAGTTGGGCAGTAACATGAAAGAAGAAGAAAAAGAAGAAGAACAGAACTGGGAACAGTAAAAGGAAGAAGCTTTAAATGGCTTGGAGCTGTTGAGCAGTCACATTACAGGCAATTCCAAAGTGGGACCTTTTTTTCTTCAGTGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEVMKNLVQNSFMTQEMLCAGQIDDQKFSYGAQ
BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 9.2e-46 Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1
BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20 Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1
BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20 Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1
BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A061E6T9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010558 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19 Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1
BLAST of Lsi04G005990 vs. TrEMBL
Match: B9HTS5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19 Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1
BLAST of Lsi04G005990 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein) HSP 1 Score: 84.3 bits (207), Expect = 6.2e-17 Identity = 50/108 (46.30%), Postives = 78/108 (72.22%), Query Frame = 1
BLAST of Lsi04G005990 vs. TAIR10
Match: AT1G24580.1 (AT1G24580.1 RING/U-box superfamily protein) HSP 1 Score: 63.9 bits (154), Expect = 8.6e-11 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|778704905|ref|XP_011655602.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]) HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45 Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1
BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|296081356|emb|CBI16789.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21 Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 1
BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|590695189|ref|XP_007044820.1| (RING/U-box superfamily protein [Theobroma cacao]) HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20 Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1
BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|802723824|ref|XP_012085531.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]) HSP 1 Score: 105.5 bits (262), Expect = 7.3e-20 Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1
BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|590695186|ref|XP_007044819.1| (Uncharacterized protein TCM_010558 [Theobroma cacao]) HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19 Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |