Lsi04G005990 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G005990
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING-H2 type zinc finger
Locationchr04 : 5535584 .. 5536699 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGCCCTCTCTGTCGCTCCATTGAATAATATTTTAACTTCCACTGCTAAATTGCAGTCCAGCTTTTTGAAGGAAACTTCTGCTTTCATTTCAACAATTCTAGGGGGTTTTTTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTGACATTTCTTTTCTATCTCTGTCTCTCTCTCGAAAGGGGATGAAGTTTTGTAATATCATCACTTTTCCTTTATGTATTTGTAGTGTATAATGAAAGATGAGGGATAGTGGAATTGTTTCTTTTTTCTGTTTTTTCAAATAAATCGTTTTCTGTTCTATTAAGAGCTCCTAGGCAAACTAAAAGTGCCCAAAAAGACCGATTTAGAATTCAAAAAGATTTTGAAGGGTTTCTCTGTTCCTATCAGTCATTAAACTCATTGGAGTTGAGAGAGACTAGGAATAGGAAAAGTAGTGGAAGAAGAAGCACAAAACTGAGTTAATTAGTAAAAGCAAGCAGCTTTAAAATTCTTAGAGCAGTTGGGCAGTAACATGAAAGAAGAAGAAAAAGAAGAAGAACAGAACTGGGAACAGTAAAAGGAAGAAGCTTTAAATGGCTTGGAGCTGTTGAGCAGTCACATTACAGGCAATTCCAAAGTGGGACCTTTTTTTCTTCAGTGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA

mRNA sequence

ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA

Coding sequence (CDS)

ATGGGTCTCTCAAATTTTCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTCTTGAAGAATTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACTCAGTTCAAATCTTTGGGGCAAAGCTTTAATGGTGGAACAGAGAATGACTCTGCTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTGTGTAGGTTTGAAGCTGATGAAGAAGTTATGAAAAATCTGGTTCAGAACTCATTCATGACACAAGAAATGCTGTGTGCTGGCCAAATTGATGACCAGAAGTTCAGCTATGGGGCACAATAA

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEVMKNLVQNSFMTQEMLCAGQIDDQKFSYGAQ
BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 9.2e-46
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
           ERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRFEADEEV
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEV 106

BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGV  LPVLVMNTV+S+A LKN+VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGV--LPVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEVMKNLVQNS 120
           EN   RERRISITQFKSL  + +G      +      ECCVCLC FEADEEV +   ++ 
Sbjct: 61  ENIKARERRISITQFKSLCHTSDG----SGSGWANTVECCVCLCGFEADEEVSELSCKHF 120

Query: 121 FMTQEMLCAGQIDDQKFS 133
           F     +C  +  D K S
Sbjct: 121 F---HKVCLEKWFDNKHS 129

BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEE---EYDWE 60
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+      E+   E+  E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
           N R R ISITQFKSL    NGG      SR  + ECCVCLC FEA+EEV
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGGSRGAIVECCVCLCGFEAEEEV 107

BLAST of Lsi04G005990 vs. TrEMBL
Match: A0A061E6T9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010558 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSL-----GQSFNGGTENDSASRCVMA----------ECCVCLCR 106
           EN   RERRISITQFKSL          G + + +AS C  +          ECCVCLC 
Sbjct: 61  ENIKARERRISITQFKSLCHTSESSICEGSSTSAAASACSCSGSGSGWANTVECCVCLCG 120

BLAST of Lsi04G005990 vs. TrEMBL
Match: B9HTS5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASG----NSSSSEEEYDW 60
           MGLS+FP +AEGVL  PVLVMNTV+S+A LK++VRSV+Q++  +     +     +EY  
Sbjct: 1   MGLSSFPGAAEGVL--PVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRR 60

Query: 61  ENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
           EN RERRISITQFKSL Q       ND  +R    ECCVCLC FEA+EEV
Sbjct: 61  ENARERRISITQFKSLNQ-------NDGGARNSAMECCVCLCGFEAEEEV 101

BLAST of Lsi04G005990 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-17
Identity = 50/108 (46.30%), Postives = 78/108 (72.22%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSS-SSEEEYDWENG 60
           MG+S++P ++EGV+  P+LVMNTV+S++ +KN+VRSV+ M+S+  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGVM--PMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  -RERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
            R RRISIT F+SL +  N G+ N+  +     +CCVCLC F+ +EEV
Sbjct: 61  KRRRRISITHFESLCE--NRGSRNEREA----MDCCVCLCGFKEEEEV 100

BLAST of Lsi04G005990 vs. TAIR10
Match: AT1G24580.1 (AT1G24580.1 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 8.6e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1

Query: 21  MNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGRERRISITQFKSLGQSFNGGT 80
           MNTV+S+  LKN+VRSV Q++++   SS   ++   ++   RRISITQFKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  ENDSASRCVMAECCVCLCRFEADEEV 107
           E          ECCVCLC F+ +EEV
Sbjct: 61  EEKG------VECCVCLCGFKEEEEV 80

BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|778704905|ref|XP_011655602.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEEYDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGNSSSSEEEYDWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
           ERRISITQFK+LGQSFNG TE +  SRCVMAECCVCLCRFEADEEV
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEV 106

BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|296081356|emb|CBI16789.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSS-----SEEEYD 60
           MGLSNF   AEGVL  PVLVMNTVMS+A LKN+VRSV+Q+M A+G+S +     S EEY 
Sbjct: 1   MGLSNFHSPAEGVL--PVLVMNTVMSVALLKNMVRSVLQVMGANGSSPNLEEDPSNEEYS 60

Query: 61  --WENGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
              EN +ERR+S+TQFKSL  S   GT       C   +CCVCLCRFEA+EEV
Sbjct: 61  PMSENAKERRVSVTQFKSLSHSSGTGT-----GWCSSMDCCVCLCRFEAEEEV 106

BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|590695189|ref|XP_007044820.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGV  LPVLVMNTV+S+A LKN+VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGV--LPVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEVMKNLVQNS 120
           EN   RERRISITQFKSL  + +G      +      ECCVCLC FEADEEV +   ++ 
Sbjct: 61  ENIKARERRISITQFKSLCHTSDG----SGSGWANTVECCVCLCGFEADEEVSELSCKHF 120

Query: 121 FMTQEMLCAGQIDDQKFS 133
           F     +C  +  D K S
Sbjct: 121 F---HKVCLEKWFDNKHS 129

BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|802723824|ref|XP_012085531.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas])

HSP 1 Score: 105.5 bits (262), Expect = 7.3e-20
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEE---EYDWE 60
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+      E+   E+  E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NGRERRISITQFKSLGQSFNGGTENDSASRCVMAECCVCLCRFEADEEV 107
           N R R ISITQFKSL    NGG      SR  + ECCVCLC FEA+EEV
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGGSRGAIVECCVCLCGFEAEEEV 107

BLAST of Lsi04G005990 vs. NCBI nr
Match: gi|590695186|ref|XP_007044819.1| (Uncharacterized protein TCM_010558 [Theobroma cacao])

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 1

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSL-----GQSFNGGTENDSASRCVMA----------ECCVCLCR 106
           EN   RERRISITQFKSL          G + + +AS C  +          ECCVCLC 
Sbjct: 61  ENIKARERRISITQFKSLCHTSESSICEGSSTSAAASACSCSGSGSGWANTVECCVCLCG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTI8_CUCSA9.2e-4692.45Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1[more]
A0A061E8K8_THECC1.0e-2052.17RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1[more]
A0A067JRV9_JATCU5.1e-2055.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1[more]
A0A061E6T9_THECC1.1e-1954.76Uncharacterized protein OS=Theobroma cacao GN=TCM_010558 PE=4 SV=1[more]
B9HTS5_POPTR3.3e-1956.36Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G67856.16.2e-1746.30 RING/U-box superfamily protein[more]
AT1G24580.18.6e-1144.19 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778704905|ref|XP_011655602.1|1.3e-4592.45PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus][more]
gi|296081356|emb|CBI16789.3|3.9e-2159.29unnamed protein product [Vitis vinifera][more]
gi|590695189|ref|XP_007044820.1|1.5e-2052.17RING/U-box superfamily protein [Theobroma cacao][more]
gi|802723824|ref|XP_012085531.1|7.3e-2055.96PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas][more]
gi|590695186|ref|XP_007044819.1|1.6e-1954.76Uncharacterized protein TCM_010558 [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005990.1Lsi04G005990.1mRNA


The following gene(s) are paralogous to this gene:

None