CSPI05G22190 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G22190
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING/U-box superfamily protein
Location	Chr5 : 22670320 .. 22670915 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATATATACATACATACATACACACTTATTTGCATTTTGGGCTCTTTTTTCTTCTTCTTTCTTCCTTCTTAAGCCTCAAAACCAACCTATTTCTTCAACCTTGAAACAGATAGAACAACAAAAAGAAAAGAAGAAAAAAGTTTCAAATTTTGAGGTGTTTTTTGAAGATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAATGTTTTTAAC

mRNA sequence

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAA

Coding sequence (CDS)

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTACCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAA

Homology

[Close]

BLAST of CSPI05G22190 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-16
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSAS---GNSSSSEEEYDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K  VRS + ++  S    +SS S      E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NRRERR---ISITQFKTLGQSFNGETEE---EFVSRCVMA---ECCVCLCRFEADEEVSE 120
           N          + Q ++  + F   T     E + RC      EC VCL +F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHFTCPLCRS 137
           L C H FHK CL KW D  + TCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of CSPI05G22190 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-09
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 91  AECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCRS 137
           ++C VCL + +  EEV +L C+H FHK CL  W  + +F CPLCRS
Sbjct: 72  SDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]

BLAST of CSPI05G22190 vs. Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1


Query: 91  AECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCR 136
           AECC+CLC +E   E+ EL C H FH  C+ KW  + +  CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCK 379

[Close]

BLAST of CSPI05G22190 vs. Swiss-Prot
Match: AIP2_ARATH (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-07
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 1


Query: 80  TEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCR 136
           TEE        AECC+C       +++ EL CKH FH  CL  W D +H +CP+CR
Sbjct: 217 TEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICR 271

[Close]

BLAST of CSPI05G22190 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 1


Query: 92  ECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCR 136
           +C VCL  FE  E V E+ CKH FH  C+  W  NK  +CPLCR
Sbjct: 78  KCPVCLLEFEEQESVREMPCKHLFHTGCILPWL-NKTNSCPLCR 120

[Close]

BLAST of CSPI05G22190 vs. TrEMBL
Match: A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHFTCPLCRSIE 139
           SKWFDNKHFTCPLCRSIE
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of CSPI05G22190 vs. TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 94/143 (65.73%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 120
           EN   RERRISITQFK+L  + +G             ECCVCLC FEADEEVSELSCKHF
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGS----GWANTVECCVCLCGFEADEEVSELSCKHF 120

Query: 121 FHKACLSKWFDNKHFTCPLCRSI 138
           FHK CL KWFDNKH TCPLCRSI
Sbjct: 121 FHKVCLEKWFDNKHSTCPLCRSI 137

[Close]

BLAST of CSPI05G22190 vs. TrEMBL
Match: M5XHD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN VRSV+Q+M A+ NS S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENPDGCPAE 60

Query: 61  ENRRERRISITQFKTLGQS-FNGETEEEFVSRCVMA--ECCVCLCRFEADEEVSELSCKH 120
              RERRISI+QFK+L  S  N       V++      ECCVCLC FEA++EVSELSCKH
Sbjct: 61  MIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAMECCVCLCGFEAEQEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHFTCPLCRSIE 139
           FFHK CL KWFDN H TCPLCRS++
Sbjct: 121 FFHKGCLEKWFDNNHSTCPLCRSVD 143

[Close]

BLAST of CSPI05G22190 vs. TrEMBL
Match: A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 85/140 (60.71%), Postives = 101/140 (72.14%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEE---EYDWE 60
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN VRS++Q++ A+      E+   E+  E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHK 120
           N R R ISITQFK+L    NG       SR  + ECCVCLC FEA+EEVSELSCKHFFH+
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGGSRGAIVECCVCLCGFEAEEEVSELSCKHFFHR 120

Query: 121 ACLSKWFDNKHFTCPLCRSI 138
            CL KW DNKH TCPLCRSI
Sbjct: 121 GCLDKWIDNKHSTCPLCRSI 138

[Close]

BLAST of CSPI05G22190 vs. TrEMBL
Match: A0A067H3V9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039522mg PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 92/153 (60.13%), Postives = 108/153 (70.59%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSS--EEEYDW-- 60
           MGLSNFP +AEG  LLP LVMNTV+S+A LKN VRS++Q M A+ +SSSS  E+E D   
Sbjct: 1   MGLSNFPSAAEG--LLPGLVMNTVLSVALLKNMVRSLLQGMGAASDSSSSNVEDESDGFI 60

Query: 61  ------ENRRERRISITQFKTLGQSFNGETEEEFVSR-----CVMA-ECCVCLCRFEADE 120
                 +N RERRIS+TQFK+L  S +  +     S      C  A ECCVCL RF++DE
Sbjct: 61  SSNSEDDNARERRISVTQFKSLCDSRSSSSSTVARSNGGSTSCSAAMECCVCLSRFQSDE 120

Query: 121 EVSELSCKHFFHKACLSKWFDNKHFTCPLCRSI 138
           EVSELSCKHFFH+ CL KWFDNKH TCPLCRSI
Sbjct: 121 EVSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151

[Close]

BLAST of CSPI05G22190 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-33
Identity = 73/140 (52.14%), Postives = 102/140 (72.86%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSS-SSEEEYDWEN- 60
           MG+S++P ++EGV+  P+LVMNTV+S++ +KN VRSV+ M+S+  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGVM--PMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSEL-SCKHFFHK 120
           +R RRISIT F++L ++     E E +      +CCVCLC F+ +EEVSEL SCKH+FH 
Sbjct: 61  KRRRRISITHFESLCENRGSRNEREAM------DCCVCLCGFKEEEEVSELVSCKHYFHS 120

Query: 121 ACLSKWFDNKHFTCPLCRSI 138
           ACL KWF N H TCPLCRSI
Sbjct: 121 ACLDKWFGNNHTTCPLCRSI 132

[Close]

BLAST of CSPI05G22190 vs. TAIR10
Match: AT1G24580.1 (AT1G24580.1 RING/U-box superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 9.3e-29
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 1


Query: 21  MNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRRERRISITQFKTLGQSFNGET 80
           MNTV+S+  LKN VRSV Q++++   SS   ++   ++   RRISITQFK+L ++   E 
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  EEEFVSRCVMAECCVCLCRFEADEEVSEL-SCKHFFHKACLSKWFDNKHFTCPLCRSI 138
           EE+ V      ECCVCLC F+ +EEVSEL SCKHFFH+ACL  WF N H TCPLCRSI
Sbjct: 61  EEKGV------ECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSI 112

[Close]

BLAST of CSPI05G22190 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-17
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSAS---GNSSSSEEEYDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K  VRS + ++  S    +SS S      E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NRRERR---ISITQFKTLGQSFNGETEE---EFVSRCVMA---ECCVCLCRFEADEEVSE 120
           N          + Q ++  + F   T     E + RC      EC VCL +F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHFTCPLCRS 137
           L C H FHK CL KW D  + TCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of CSPI05G22190 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 91  AECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCRS 137
           ++C VCL + +  EEV +L C+H FHK CL  W  + +F CPLCRS
Sbjct: 72  SDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]

BLAST of CSPI05G22190 vs. TAIR10
Match: AT4G32600.1 (AT4G32600.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1


Query: 91  AECCVCLCRFEADEEVSELSCKHFFHKACLSKWFDNKHFTCPLCRS 137
           A CC+CL ++  +EE+ EL C HFFHK C+ KW    + +CPLC+S
Sbjct: 361 AVCCICLAKYANNEELRELPCSHFFHKECVDKWL-KINASCPLCKS 405

[Close]

BLAST of CSPI05G22190 vs. NCBI nr
Match: gi|778704905|ref|XP_011655602.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHFTCPLCRSIE 139
           SKWFDNKHFTCPLCRSIE
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of CSPI05G22190 vs. NCBI nr
Match: gi|590695189|ref|XP_007044820.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 170.6 bits (431), Expect = 1.9e-39
Identity = 94/143 (65.73%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEE----YDW 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN VRS++Q++ ASG+SSSS ++    Y  
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 120
           EN   RERRISITQFK+L  + +G             ECCVCLC FEADEEVSELSCKHF
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGS----GWANTVECCVCLCGFEADEEVSELSCKHF 120

Query: 121 FHKACLSKWFDNKHFTCPLCRSI 138
           FHK CL KWFDNKH TCPLCRSI
Sbjct: 121 FHKVCLEKWFDNKHSTCPLCRSI 137

[Close]

BLAST of CSPI05G22190 vs. NCBI nr
Match: gi|296081356|emb|CBI16789.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 91/144 (63.19%), Postives = 104/144 (72.22%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSS-----SEEEYD 60
           MGLSNF   AEGVL  PVLVMNTVMS+A LKN VRSV+Q+M A+G+S +     S EEY 
Sbjct: 1   MGLSNFHSPAEGVL--PVLVMNTVMSVALLKNMVRSVLQVMGANGSSPNLEEDPSNEEYS 60

Query: 61  --WENRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKH 120
              EN +ERR+S+TQFK+L  S    T       C   +CCVCLCRFEA+EEVSELSCKH
Sbjct: 61  PMSENAKERRVSVTQFKSLSHSSGTGT-----GWCSSMDCCVCLCRFEAEEEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHFTCPLCRSI 138
           FFHK C  KWFDNKH +CPLCRSI
Sbjct: 121 FFHKGCWEKWFDNKHSSCPLCRSI 137

[Close]

BLAST of CSPI05G22190 vs. NCBI nr
Match: gi|645230365|ref|XP_008221903.1| (PREDICTED: RING-H2 finger protein ATL47 [Prunus mume])

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-37
Identity = 89/147 (60.54%), Postives = 103/147 (70.07%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN VRSV+Q+M A+ NS S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENQDGCPAE 60

Query: 61  ENRRERRISITQFKTLGQSFNGETEEEFVSRCVMA-----ECCVCLCRFEADEEVSELSC 120
              RERRISI+QFK+L  S +        +R         ECCVCLC FEA++EVSELSC
Sbjct: 61  MIARERRISISQFKSLCHSNSNSNSRPNNTRVAKTNSWAMECCVCLCGFEAEQEVSELSC 120

Query: 121 KHFFHKACLSKWFDNKHFTCPLCRSIE 139
           KHFFHK CL KWFDN H TCPLCRS++
Sbjct: 121 KHFFHKGCLEKWFDNNHSTCPLCRSVD 145

[Close]

BLAST of CSPI05G22190 vs. NCBI nr
Match: gi|596202066|ref|XP_007223707.1| (hypothetical protein PRUPE_ppa013029mg [Prunus persica])

HSP 1 Score: 162.5 bits (410), Expect = 5.1e-37
Identity = 90/145 (62.07%), Postives = 104/145 (71.72%), Query Frame = 1


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN VRSV+Q+M A+ NS S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENPDGCPAE 60

Query: 61  ENRRERRISITQFKTLGQS-FNGETEEEFVSRCVMA--ECCVCLCRFEADEEVSELSCKH 120
              RERRISI+QFK+L  S  N       V++      ECCVCLC FEA++EVSELSCKH
Sbjct: 61  MIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAMECCVCLCGFEAEQEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHFTCPLCRSIE 139
           FFHK CL KWFDN H TCPLCRS++
Sbjct: 121 FFHKGCLEKWFDNNHSTCPLCRSVD 143

The following BLAST results are available for this feature:

BLAST of CSPI05G22190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	8.5e-16	35.81	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RHA2B_ARATH	5.9e-09	50.00	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2	[more]
RING4_ARATH	1.9e-07	48.89	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 ...	[more]
AIP2_ARATH	7.2e-07	42.86	E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1	[more]
RN181_DANRE	1.2e-06	52.27	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2	[more]

BLAST of CSPI05G22190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTI8_CUCSA	1.4e-73	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1	[more]
A0A061E8K8_THECC	1.3e-39	65.73	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1	[more]
M5XHD4_PRUPE	3.6e-37	62.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1	[more]
A0A067JRV9_JATCU	1.0e-36	60.71	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1	[more]
A0A067H3V9_CITSI	1.8e-36	60.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039522mg PE=4 SV=1	[more]

BLAST of CSPI05G22190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67856.1	1.3e-33	52.14	RING/U-box superfamily protein	[more]
AT1G24580.1	9.3e-29	55.08	RING/U-box superfamily protein	[more]
AT2G04240.1	4.8e-17	35.81	RING/U-box superfamily protein	[more]
AT2G01150.1	3.3e-10	50.00	RING-H2 finger protein 2B	[more]
AT4G32600.1	1.3e-09	50.00	RING/U-box superfamily protein	[more]

BLAST of CSPI05G22190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704905\|ref\|XP_011655602.1\|	2.0e-73	100.00	PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]	[more]
gi\|590695189\|ref\|XP_007044820.1\|	1.9e-39	65.73	RING/U-box superfamily protein [Theobroma cacao]	[more]
gi\|296081356\|emb\|CBI16789.3\|	1.6e-38	63.19	unnamed protein product [Vitis vinifera]	[more]
gi\|645230365\|ref\|XP_008221903.1\|	1.8e-37	60.54	PREDICTED: RING-H2 finger protein ATL47 [Prunus mume]	[more]
gi\|596202066\|ref\|XP_007223707.1\|	5.1e-37	62.07	hypothetical protein PRUPE_ppa013029mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G22190.1	CSPI05G22190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 92..135 score: 4.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 93..134 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 93..135 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 91..136 score: 1.8
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 13..136 score: 2.6
None	No IPR available	PANTHER	PTHR14155:SF102	RING ZINC FINGER-CONTAINING PROTEIN	coord: 13..136 score: 2.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 92..136 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G22190	Cla010037	Watermelon (97103) v1	cpiwmB410
CSPI05G22190	Csa5G598060	Cucumber (Chinese Long) v2	cpicuB239
CSPI05G22190	MELO3C011942	Melon (DHL92) v3.5.1	cpimeB369
CSPI05G22190	ClCG05G025820	Watermelon (Charleston Gray)	cpiwcgB412
CSPI05G22190	Lsi04G005990	Bottle gourd (USVL1VR-Ls)	cpilsiB372
CSPI05G22190	MELO3C011942.2	Melon (DHL92) v3.6.1	cpimedB363
CSPI05G22190	CsaV3_5G031030	Cucumber (Chinese Long) v3	cpicucB284
CSPI05G22190	Cla97C05G108050	Watermelon (97103) v2	cpiwmbB402
CSPI05G22190	Bhi07G001441	Wax gourd	cpiwgoB516
CSPI05G22190	Cucsa.286560	Cucumber (Gy14) v1	cgycpiB432
CSPI05G22190	CmaCh04G017740	Cucurbita maxima (Rimu)	cmacpiB758
CSPI05G22190	CmoCh18G007660	Cucurbita moschata (Rifu)	cmocpiB407
CSPI05G22190	CmoCh04G018660	Cucurbita moschata (Rifu)	cmocpiB748
CSPI05G22190	Cp4.1LG01g15710	Cucurbita pepo (Zucchini)	cpecpiB440
CSPI05G22190	Cp4.1LG09g05450	Cucurbita pepo (Zucchini)	cpecpiB042
CSPI05G22190	CsGy5G021660	Cucumber (Gy14) v2	cgybcpiB225
CSPI05G22190	Carg14502	Silver-seed gourd	carcpiB0759
CSPI05G22190	Carg14307	Silver-seed gourd	carcpiB0275

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G22190	Wax gourd	cpiwgoB493
CSPI05G22190	Wild cucumber (PI 183967)	cpicpiB076
CSPI05G22190	Cucumber (Gy14) v1	cgycpiB580
CSPI05G22190	Cucurbita maxima (Rimu)	cmacpiB419
CSPI05G22190	Cucurbita maxima (Rimu)	cmacpiB814
CSPI05G22190	Cucurbita moschata (Rifu)	cmocpiB177
CSPI05G22190	Cucurbita moschata (Rifu)	cmocpiB797
CSPI05G22190	Cucumber (Chinese Long) v2	cpicuB220
CSPI05G22190	Melon (DHL92) v3.5.1	cpimeB389
CSPI05G22190	Watermelon (Charleston Gray)	cpiwcgB429
CSPI05G22190	Watermelon (97103) v1	cpiwmB382
CSPI05G22190	Cucurbita pepo (Zucchini)	cpecpiB116
CSPI05G22190	Cucurbita pepo (Zucchini)	cpecpiB838
CSPI05G22190	Bottle gourd (USVL1VR-Ls)	cpilsiB392
CSPI05G22190	Melon (DHL92) v3.6.1	cpimedB383
CSPI05G22190	Cucumber (Gy14) v2	cgybcpiB077
CSPI05G22190	Silver-seed gourd	carcpiB0538
CSPI05G22190	Silver-seed gourd	carcpiB0658
CSPI05G22190	Cucumber (Chinese Long) v3	cpicucB261
CSPI05G22190	Watermelon (97103) v2	cpiwmbB421