Carg14502 (gene) Silver-seed gourd

NameCarg14502
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING/U-box superfamily protein
LocationCucurbita_argyrosperma_scaffold_041 : 784601 .. 785508 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAATGTTGTCTTTCTAAATGGTTTGATAATCAGCATGTTACTTGCCCTCTCTGTCGCTCCATTCAATAGAACGCAACTTTTTTTTAAGGAAATTTTTGTGTTCTGTTCTTTTTCTTGCTGTTTGAGCTGAAGGGTATGAATGATTCACTGTTTTATTGAGCTTCTGGCGGAAACGAATTAGAATTATTGAGAGAAGTAGTCCGGCATTGGCTAAGAGGAAGATCGTGGGTAAGTAAAGGAGTACTATCTCCATCTGTATTCGTATGAGACCTTTCGGAAAACCAAAGGCAAAGTTATGTGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGAGATGTCTAACATGGTATAGAGTTGTATCCTTAACTTAGCTTGGTCAATAGAATCCTAAGTCGAACAAAGAAGTTGTGAGGTTTGAAGTTGTAGTCAGAGGTGACTCAAGTGTCGAACAAATAGTGTATTTTGTTTAGGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

mRNA sequence

ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

Coding sequence (CDS)

ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKGDCSRALEEEVLGEAL
BLAST of Carg14502 vs. NCBI nr
Match: XP_022966845.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 5.5e-40
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+GR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGKGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
           RISITHFKSLRQSFNGGTET+NCS XXXXXXXXXXXXX FEADEEVSELS
Sbjct: 61  RISITHFKSLRQSFNGGTETENCSVXXXXXXXXXXXXXGFEADEEVSELS 110

BLAST of Carg14502 vs. NCBI nr
Match: XP_023541596.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 7.2e-40
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSS DEYEQESGRGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSVDEYEQESGRGR 60

Query: 61  RISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
           RISITHFKSLRQSFNGGTET+NCSXXXXXXXXXXXXXXXFEADEEVSELS
Sbjct: 61  RISITHFKSLRQSFNGGTETENCSXXXXXXXXXXXXXXXFEADEEVSELS 110

BLAST of Carg14502 vs. NCBI nr
Match: XP_022945499.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR R
Sbjct: 46  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRVR 105

Query: 61  RISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
           RISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS
Sbjct: 106 RISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 155

BLAST of Carg14502 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  GRRISITHFKSLRQSF-NGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
            RRISIT FKSL QSF NGGTE  + S               FEADEEVSELS
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSAS--RCIMAECCVCLCGFEADEEVSELS 153

BLAST of Carg14502 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  GRRISITHFKSLRQSF-NGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
            RRISIT FKSL QSF NGGTE  + S               FEADEEVSELS
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSAS--RCAMAECCVCLCGFEADEEVSELS 111

BLAST of Carg14502 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG--- 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+                      
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  -RGRRISITHFKSL---RQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSEL 110
            R RRISITHF+SL   R S N     D C                F+ +EEVSEL
Sbjct: 61  KRRRRISITHFESLCENRGSRNEREAMDCC-----------VCLCGFKEEEEVSEL 103

BLAST of Carg14502 vs. TAIR10
Match: AT1G24580.1 (RING/U-box superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 0

Query: 21  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRGRRISITHFKSLRQSFNGGT 80
           MNTV+S+  LKN+VRSV Q++++   SS   D+  ++    RRISIT FKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  ETDNCSXXXXXXXXXXXXXXXFEADEEVSEL 110
           E                    F+ +EEVSEL
Sbjct: 61  EEKGVE--------CCVCLCGFKEEEEVSEL 83

BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 74/112 (66.07%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSS--SADEYEQESGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSV+QMMSA+ +S     EY+ E+ R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60

Query: 61  GRRISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
            RRISIT FK+L QSFNG TE +  S               FEADEEVSELS
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVS--RCVMAECCVCLCRFEADEEVSELS 110

BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A2C9UU07|A0A2C9UU07_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G022000 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSAN-------PSSSADEYE 60
           MGLS+FP ++EGV  LPVLVMNTV+S+A LKN+VRSV Q+M AN            DEY 
Sbjct: 1   MGLSSFPSASEGV--LPVLVMNTVLSVALLKNMVRSVFQVMGANWTLENYEQDEDPDEYP 60

Query: 61  QESGRGRRISITHFKSLRQSFNGGTETDNCS-XXXXXXXXXXXXXXXFEADEEVSELS 111
           QE    RRISIT FKSL  +   G++    S                FEADEEVSELS
Sbjct: 61  QEHAGERRISITQFKSLTNNSGSGSDGGGESGRRGGATVECCVCLCRFEADEEVSELS 116

BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A2P4H301|A0A2P4H301_QUESU (Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_00091 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA-----NPSSSADEYE-- 60
           MGLSNFP  AEGV  LPVLVMNTV+S+AF+KN+VRS+LQ+M A     NPS+  +E +  
Sbjct: 48  MGLSNFPSPAEGV--LPVLVMNTVLSVAFMKNMVRSLLQVMGATASDQNPSNLEEEQDGC 107

Query: 61  QESGRGRRISITHFKSLRQS----------FNGGTETDNCSXXXXXXXXXXXXXXXFEAD 111
            ++ R RRISIT FKSL Q+            GGT T + S               FEA+
Sbjct: 108 VQNARERRISITQFKSLCQNRSIKLGSTSKIRGGTCTTSSS--NGCIMECCVCLCRFEAE 167

BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A067JRV9|A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSAN-----PSSSADEYEQE 60
           MGLS+FP +AEGV  LP+LVMNTV+S+A LKN+VRS+LQ++ AN          DE+ +E
Sbjct: 1   MGLSSFPSAAEGV--LPILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  SGRGRRISITHFKSLRQSFNGGTETDNCS-XXXXXXXXXXXXXXXFEADEEVSELS 111
           + R R ISIT FKSL    NGG    +CS                FEA+EEVSELS
Sbjct: 61  NARMRTISITQFKSLTPHSNGG---GSCSGGSRGAIVECCVCLCGFEAEEEVSELS 111

BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A061E8K8|A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 60/118 (50.85%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSS------ADEYEQ 60
           MGLSNFP +AEGV  LPVLVMNTV+S+A LKN+VRS+LQ++ A+ SSS      +D Y +
Sbjct: 1   MGLSNFPSAAEGV--LPVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  ES--GRGRRISITHFKSLRQSFNGGTETDNCSXXXXXXXXXXXXXXXFEADEEVSELS 111
           E+   R RRISIT FKSL  +      +D                  FEADEEVSELS
Sbjct: 61  ENIKARERRISITQFKSLCHT------SDGSGSGWANTVECCVCLCGFEADEEVSELS 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022966845.15.5e-4096.36probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima][more]
XP_023541596.17.2e-4098.18probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo][more]
XP_022945499.19.4e-4099.09probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata][more]
XP_022984317.11.4e-2771.68probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima][more]
XP_023523084.11.4e-2771.68probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023... [more]
Match NameE-valueIdentityDescription
AT1G67856.12.0e-0737.93RING/U-box superfamily protein[more]
AT1G24580.14.1e-0537.36RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA8.2e-2466.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1[more]
tr|A0A2C9UU07|A0A2C9UU07_MANES1.0e-1350.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G022000 PE=4 SV=... [more]
tr|A0A2P4H301|A0A2P4H301_QUESU2.2e-1349.61Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_0... [more]
tr|A0A067JRV9|A0A067JRV9_JATCU2.2e-1350.00Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1[more]
tr|A0A061E8K8|A0A061E8K8_THECC2.9e-1350.85RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14502-RACarg14502-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 28..110
NoneNo IPR availablePANTHERPTHR14155:SF190RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 28..110

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14502Carg14307Silver-seed gourdcarcarB286