Carg14502 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAATGTTGTCTTTCTAAATGGTTTGATAATCAGCATGTTACTTGCCCTCTCTGTCGCTCCATTCAATAGAACGCAACTTTTTTTTAAGGAAATTTTTGTGTTCTGTTCTTTTTCTTGCTGTTTGAGCTGAAGGGTATGAATGATTCACTGTTTTATTGAGCTTCTGGCGGAAACGAATTAGAATTATTGAGAGAAGTAGTCCGGCATTGGCTAAGAGGAAGATCGTGGGTAAGTAAAGGAGTACTATCTCCATCTGTATTCGTATGAGACCTTTCGGAAAACCAAAGGCAAAGTTATGTGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTTGAGATGTCTAACATGGTATAGAGTTGTATCCTTAACTTAGCTTGGTCAATAGAATCCTAAGTCGAACAAAGAAGTTGTGAGGTTTGAAGTTGTAGTCAGAGGTGACTCAAGTGTCGAACAAATAGTGTATTTTGTTTAGGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGTGCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCTTCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCTTGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELSWALERVGLKGDCSRALEEEVLGEAL
BLAST of Carg14502 vs. NCBI nr
Match: XP_022966845.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]) HSP 1 Score: 173.3 bits (438), Expect = 5.5e-40 Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0
BLAST of Carg14502 vs. NCBI nr
Match: XP_023541596.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]) HSP 1 Score: 172.9 bits (437), Expect = 7.2e-40 Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0
BLAST of Carg14502 vs. NCBI nr
Match: XP_022945499.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]) HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0
BLAST of Carg14502 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]) HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27 Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0
BLAST of Carg14502 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]) HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27 Identity = 81/113 (71.68%), Postives = 87/113 (76.99%), Query Frame = 0
BLAST of Carg14502 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein) HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07 Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 0
BLAST of Carg14502 vs. TAIR10
Match: AT1G24580.1 (RING/U-box superfamily protein) HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05 Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 0
BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1) HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24 Identity = 74/112 (66.07%), Postives = 81/112 (72.32%), Query Frame = 0
BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A2C9UU07|A0A2C9UU07_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G022000 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13 Identity = 59/118 (50.00%), Postives = 69/118 (58.47%), Query Frame = 0
BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A2P4H301|A0A2P4H301_QUESU (Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_00091 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13 Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 0
BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A067JRV9|A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13 Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 0
BLAST of Carg14502 vs. TrEMBL
Match: tr|A0A061E8K8|A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13 Identity = 60/118 (50.85%), Postives = 73/118 (61.86%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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