CmoCh04G018660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G018660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr04 : 9363990 .. 9364409 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTGGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGTCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG

mRNA sequence

ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTGGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGTCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG

Coding sequence (CDS)

ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTGGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGTCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG
Homology
[Close]
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-17
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE---LDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S +PSSS      +  E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NGRERR---ISITQFKSLGQSFNNGGTEKGSASRCVMA-----ECCVCLCGFEADEEVSE 120
           N          + Q +S  + F N        S C        EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHITCPLCRS 138
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 8.6e-08
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS 138
           ++C VCL   +  EEV +L C+H FHK CL  W  + +  CPLCRS
Sbjct: 72  SDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHIT--CPLCR 137
           AECC+CLC +E   E+ EL C H FH  C+ KW    HI   CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL---HINSRCPLCK 379

[Close]
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR 137
           AECC+CL  +E   E+ EL C H FH +C+ KW    + TCPLC+
Sbjct: 351 AECCICLSAYEDGTELRELPCGHHFHCSCVDKWL-YINATCPLCK 394

[Close]
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match: AIP2_ARATH (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR 137
           AECC+C       +++ EL CKH FH  CL  W D +H +CP+CR
Sbjct: 228 AECCICKENLVIGDKMQELPCKHTFHPPCLKPWLD-EHNSCPICR 271

[Close]
BLAST of CmoCh04G018660 vs. TrEMBL
Match: A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-63
Identity = 126/139 (90.65%), Postives = 128/139 (92.09%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFK+LGQSF NG TE+   SRCVMAECCVCLC FEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 140
           LSKWFDNKH TCPLCRSIE
Sbjct: 121 LSKWFDNKHFTCPLCRSIE 138

[Close]
BLAST of CmoCh04G018660 vs. TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 96/144 (66.67%), Postives = 111/144 (77.08%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSS-EEELDW--- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++E D    
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKH 120
           EN   RERRISITQFKSL  + +  G+   +       ECCVCLCGFEADEEVSELSCKH
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGSGWANT-----VECCVCLCGFEADEEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHITCPLCRSI 139
           FFHK CL KWFDNKH TCPLCRSI
Sbjct: 121 FFHKVCLEKWFDNKHSTCPLCRSI 137

[Close]
BLAST of CmoCh04G018660 vs. TrEMBL
Match: A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.5e-40
Identity = 90/141 (63.83%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDW---E 60
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+  P   E++ D    E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NGRERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFH 120
           N R R ISITQFKSL    N GG+  G  SR  + ECCVCLCGFEA+EEVSELSCKHFFH
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGG-SRGAIVECCVCLCGFEAEEEVSELSCKHFFH 120

Query: 121 KACLSKWFDNKHITCPLCRSI 139
           + CL KW DNKH TCPLCRSI
Sbjct: 121 RGCLDKWIDNKHSTCPLCRSI 138

[Close]
BLAST of CmoCh04G018660 vs. TrEMBL
Match: M5XHD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.5e-39
Identity = 90/145 (62.07%), Postives = 105/145 (72.41%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRSV+Q+M A+ N  S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENPDGCPAE 60

Query: 61  ENGRERRISITQFKSLGQSFNNGGTEKGSASRCVMA--ECCVCLCGFEADEEVSELSCKH 120
              RERRISI+QFKSL  S +N        ++      ECCVCLCGFEA++EVSELSCKH
Sbjct: 61  MIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAMECCVCLCGFEAEQEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHITCPLCRSIE 140
           FFHK CL KWFDN H TCPLCRS++
Sbjct: 121 FFHKGCLEKWFDNNHSTCPLCRSVD 143

[Close]
BLAST of CmoCh04G018660 vs. TrEMBL
Match: B9HTS5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 92/141 (65.25%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMM-SASGNPSSSEEELDW--- 60
           MGLS+FP +AEGVL  PVLVMNTV+S+A LK++VRSV+Q++  A+  P   EEE D    
Sbjct: 1   MGLSSFPGAAEGVL--PVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRR 60

Query: 61  ENGRERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFF 120
           EN RERRISITQFKSL Q  N+GG    +       ECCVCLCGFEA+EEVSELSCKHFF
Sbjct: 61  ENARERRISITQFKSLNQ--NDGGARNSAM------ECCVCLCGFEAEEEVSELSCKHFF 120

Query: 121 HKACLSKWFDNKHITCPLCRS 138
           H+ CL KWFDN H TCPLCRS
Sbjct: 121 HRGCLDKWFDNIHATCPLCRS 131

[Close]
BLAST of CmoCh04G018660 vs. TAIR10
Match: AT1G67856.1 (AT1G67856.1 RING/U-box superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-34
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPS-SSEEELDWENG 60
           MG+S++P ++EGV+  P+LVMNTV+S++ +KN+VRSV+ M+S+  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGVM--PMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  -RERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSEL-SCKHFFH 120
            R RRISIT F+SL ++       +GS +     +CCVCLCGF+ +EEVSEL SCKH+FH
Sbjct: 61  KRRRRISITHFESLCEN-------RGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFH 120

Query: 121 KACLSKWFDNKHITCPLCRSI 139
            ACL KWF N H TCPLCRSI
Sbjct: 121 SACLDKWFGNNHTTCPLCRSI 132

[Close]
BLAST of CmoCh04G018660 vs. TAIR10
Match: AT1G24580.1 (AT1G24580.1 RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1 

Query: 21  MNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGRERRISITQFKSLGQSFNNGG 80
           MNTV+S+  LKN+VRSV Q++++    S   ++   ++   RRISITQFKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  TEKGSASRCVMAECCVCLCGFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRSI 139
            EKG        ECCVCLCGF+ +EEVSEL SCKHFFH+ACL  WF N H TCPLCRSI
Sbjct: 61  EEKG-------VECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSI 112

[Close]
BLAST of CmoCh04G018660 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-18
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE---LDWE 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S +PSSS      +  E
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  NGRERR---ISITQFKSLGQSFNNGGTEKGSASRCVMA-----ECCVCLCGFEADEEVSE 120
           N          + Q +S  + F N        S C        EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHITCPLCRS 138
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]
BLAST of CmoCh04G018660 vs. TAIR10
Match: AT2G01150.1 (AT2G01150.1 RING-H2 finger protein 2B)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS 138
           ++C VCL   +  EEV +L C+H FHK CL  W  + +  CPLCRS
Sbjct: 72  SDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]
BLAST of CmoCh04G018660 vs. TAIR10
Match: AT4G11680.1 (AT4G11680.1 Zinc finger, C3HC4 type (RING finger) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 

Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHIT--CPLCR 137
           AECC+CLC +E   E+ EL C H FH  C+ KW    HI   CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL---HINSRCPLCK 379

[Close]
BLAST of CmoCh04G018660 vs. NCBI nr
Match: gi|778704905|ref|XP_011655602.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.9e-63
Identity = 126/139 (90.65%), Postives = 128/139 (92.09%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFK+LGQSF NG TE+   SRCVMAECCVCLC FEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 140
           LSKWFDNKH TCPLCRSIE
Sbjct: 121 LSKWFDNKHFTCPLCRSIE 138

[Close]
BLAST of CmoCh04G018660 vs. NCBI nr
Match: gi|590695189|ref|XP_007044820.1| (RING/U-box superfamily protein [Theobroma cacao])

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40
Identity = 96/144 (66.67%), Postives = 111/144 (77.08%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSS-EEELDW--- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRS++Q++ ASG+ SSS ++E D    
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--GRERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKH 120
           EN   RERRISITQFKSL  + +  G+   +       ECCVCLCGFEADEEVSELSCKH
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGSGWANT-----VECCVCLCGFEADEEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHITCPLCRSI 139
           FFHK CL KWFDNKH TCPLCRSI
Sbjct: 121 FFHKVCLEKWFDNKHSTCPLCRSI 137

[Close]
BLAST of CmoCh04G018660 vs. NCBI nr
Match: gi|802723824|ref|XP_012085531.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas])

HSP 1 Score: 172.6 bits (436), Expect = 5.0e-40
Identity = 90/141 (63.83%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDW---E 60
           MGLS+FP +AEGVL  P+LVMNTV+S+A LKN+VRS++Q++ A+  P   E++ D    E
Sbjct: 1   MGLSSFPSAAEGVL--PILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NGRERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFH 120
           N R R ISITQFKSL    N GG+  G  SR  + ECCVCLCGFEA+EEVSELSCKHFFH
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGG-SRGAIVECCVCLCGFEAEEEVSELSCKHFFH 120

Query: 121 KACLSKWFDNKHITCPLCRSI 139
           + CL KW DNKH TCPLCRSI
Sbjct: 121 RGCLDKWIDNKHSTCPLCRSI 138

[Close]
BLAST of CmoCh04G018660 vs. NCBI nr
Match: gi|645230365|ref|XP_008221903.1| (PREDICTED: RING-H2 finger protein ATL47 [Prunus mume])

HSP 1 Score: 169.1 bits (427), Expect = 5.5e-39
Identity = 90/147 (61.22%), Postives = 106/147 (72.11%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRSV+Q+M A+ N  S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENQDGCPAE 60

Query: 61  ENGRERRISITQFKSLGQSFNNGGTEKGSA----SRCVMAECCVCLCGFEADEEVSELSC 120
              RERRISI+QFKSL  S +N  +   +     +     ECCVCLCGFEA++EVSELSC
Sbjct: 61  MIARERRISISQFKSLCHSNSNSNSRPNNTRVAKTNSWAMECCVCLCGFEAEQEVSELSC 120

Query: 121 KHFFHKACLSKWFDNKHITCPLCRSIE 140
           KHFFHK CL KWFDN H TCPLCRS++
Sbjct: 121 KHFFHKGCLEKWFDNNHSTCPLCRSVD 145

[Close]
BLAST of CmoCh04G018660 vs. NCBI nr
Match: gi|596202066|ref|XP_007223707.1| (hypothetical protein PRUPE_ppa013029mg [Prunus persica])

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-38
Identity = 90/145 (62.07%), Postives = 105/145 (72.41%), Query Frame = 1 

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDW---- 60
           MGLSNFP +AEGVL  PVLVMNTV+S+A LKN+VRSV+Q+M A+ N  S EE  D     
Sbjct: 1   MGLSNFPSAAEGVL--PVLVMNTVLSVALLKNMVRSVLQVMGANVNSQSFEENPDGCPAE 60

Query: 61  ENGRERRISITQFKSLGQSFNNGGTEKGSASRCVMA--ECCVCLCGFEADEEVSELSCKH 120
              RERRISI+QFKSL  S +N        ++      ECCVCLCGFEA++EVSELSCKH
Sbjct: 61  MIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAMECCVCLCGFEAEQEVSELSCKH 120

Query: 121 FFHKACLSKWFDNKHITCPLCRSIE 140
           FFHK CL KWFDN H TCPLCRS++
Sbjct: 121 FFHKGCLEKWFDNNHSTCPLCRSVD 143

The following BLAST results are available for this feature:
BLAST of CmoCh04G018660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
XERIC_ARATH7.7e-1737.16Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RHA2B_ARATH8.6e-0847.83E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2[more]
RING4_ARATH2.5e-0751.06E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 ... [more]
RING1_ARATH1.2e-0648.89E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=1 ... [more]
AIP2_ARATH1.6e-0646.67E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1[more]
BLAST of CmoCh04G018660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTI8_CUCSA1.3e-6390.65Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598060 PE=4 SV=1[more]
A0A061E8K8_THECC1.2e-4066.67RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1[more]
A0A067JRV9_JATCU3.5e-4063.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17849 PE=4 SV=1[more]
M5XHD4_PRUPE8.5e-3962.07Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1[more]
B9HTS5_POPTR1.1e-3865.25Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s05720g PE=4 SV=1[more]
BLAST of CmoCh04G018660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67856.11.9e-3453.19 RING/U-box superfamily protein[more]
AT1G24580.13.2e-2954.62 RING/U-box superfamily protein[more]
AT2G04240.14.4e-1837.16 RING/U-box superfamily protein[more]
AT2G01150.14.8e-0947.83 RING-H2 finger protein 2B[more]
AT4G11680.11.4e-0851.06 Zinc finger, C3HC4 type (RING finger) family protein[more]
BLAST of CmoCh04G018660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778704905|ref|XP_011655602.1|1.9e-6390.65PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus][more]
gi|590695189|ref|XP_007044820.1|1.7e-4066.67RING/U-box superfamily protein [Theobroma cacao][more]
gi|802723824|ref|XP_012085531.1|5.0e-4063.83PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas][more]
gi|645230365|ref|XP_008221903.1|5.5e-3961.22PREDICTED: RING-H2 finger protein ATL47 [Prunus mume][more]
gi|596202066|ref|XP_007223707.1|1.2e-3862.07hypothetical protein PRUPE_ppa013029mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G018660.1CmoCh04G018660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 93..136
score: 2.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 94..135
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 94..136
score: 11
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 93..136
score: 0.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 92..137
score: 1.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 92..137
score: 5.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 93..137
score: 1.81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G018660Cucsa.286560Cucumber (Gy14) v1cgycmoB0794
CmoCh04G018660CmaCh04G017740Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G018660Cla010037Watermelon (97103) v1cmowmB694
CmoCh04G018660Csa5G598060Cucumber (Chinese Long) v2cmocuB739
CmoCh04G018660MELO3C011942Melon (DHL92) v3.5.1cmomeB632
CmoCh04G018660ClCG05G025820Watermelon (Charleston Gray)cmowcgB655
CmoCh04G018660CSPI05G22190Wild cucumber (PI 183967)cmocpiB748
CmoCh04G018660Lsi04G005990Bottle gourd (USVL1VR-Ls)cmolsiB661
CmoCh04G018660Cp4.1LG09g05450Cucurbita pepo (Zucchini)cmocpeB646
CmoCh04G018660Cp4.1LG01g15710Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G018660MELO3C011942.2Melon (DHL92) v3.6.1cmomedB721
CmoCh04G018660CsaV3_5G031030Cucumber (Chinese Long) v3cmocucB0875
CmoCh04G018660Cla97C05G108050Watermelon (97103) v2cmowmbB730
CmoCh04G018660Bhi07G001441Wax gourdcmowgoB0890
CmoCh04G018660CsGy5G021660Cucumber (Gy14) v2cgybcmoB653
CmoCh04G018660Carg14502Silver-seed gourdcarcmoB0985
CmoCh04G018660Carg14307Silver-seed gourdcarcmoB0343
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G018660CmoCh18G007660Cucurbita moschata (Rifu)cmocmoB341
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G018660Cucurbita pepo (Zucchini)cmocpeB656
CmoCh04G018660Bottle gourd (USVL1VR-Ls)cmolsiB698
CmoCh04G018660Cucumber (Gy14) v2cgybcmoB232
CmoCh04G018660Melon (DHL92) v3.6.1cmomedB761
CmoCh04G018660Silver-seed gourdcarcmoB0685
CmoCh04G018660Silver-seed gourdcarcmoB0858
CmoCh04G018660Cucumber (Chinese Long) v3cmocucB0808
CmoCh04G018660Watermelon (97103) v2cmowmbB763
CmoCh04G018660Wax gourdcmowgoB0861
CmoCh04G018660Cucurbita moschata (Rifu)cmocmoB472
CmoCh04G018660Cucumber (Gy14) v1cgycmoB1092
CmoCh04G018660Cucurbita maxima (Rimu)cmacmoB189
CmoCh04G018660Cucurbita maxima (Rimu)cmacmoB422
CmoCh04G018660Cucurbita maxima (Rimu)cmacmoB785
CmoCh04G018660Wild cucumber (PI 183967)cmocpiB693
CmoCh04G018660Cucumber (Chinese Long) v2cmocuB682
CmoCh04G018660Melon (DHL92) v3.5.1cmomeB673
CmoCh04G018660Watermelon (Charleston Gray)cmowcgB683
CmoCh04G018660Watermelon (97103) v1cmowmB666