CsGy5G021660 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAATGTTTTTAACAATTTTAGGGGTTTTTTTTAAAAAAATTTCTTTCTCTATCTCTCTTCCTATTTCATTTTGAGTGAAAGAGGATGAAGTTTTGAAACTGCTAAGTGATATATAATTAAATTCACTATACCTACCCATTGTAGTTTAAGTTTTTGGGTACTGGTGATTTATGTTCAAGTCGTGTAATATCATTTCCTCTTTGAACAAAAAAATTGTTCGTATCTCAAGCTATGAAAAAGTGATTTAAGAGCAATACCAACACTTTGTTACTTTGTATTTGTAGTATTAAAATAGGTGGGGGATAGTGGAAGTGTTTCTTTTTCTTTTTTCAGATAAATCATTTACTGTTTTATTAAACTCCTAG ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSFTVLLNS
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_011655602.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN51747.1 hypothetical protein Csa_5G598060 [Cucumis sativus]) HSP 1 Score: 210.7 bits (535), Expect = 2.8e-51 Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]) HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42 Identity = 95/115 (82.61%), Postives = 99/115 (86.09%), Query Frame = 0
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022957080.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]) HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42 Identity = 96/115 (83.48%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]) HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42 Identity = 95/115 (82.61%), Postives = 98/115 (85.22%), Query Frame = 0
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022151826.1 (probable E3 ubiquitin-protein ligase XERICO [Momordica charantia]) HSP 1 Score: 140.2 bits (352), Expect = 4.6e-30 Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = 0
BLAST of CsGy5G021660 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein) HSP 1 Score: 75.1 bits (183), Expect = 3.3e-14 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0
BLAST of CsGy5G021660 vs. TAIR10
Match: AT1G24580.1 (RING/U-box superfamily protein) HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13 Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51 Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0
BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A2P4H301|A0A2P4H301_QUESU (Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_00091 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21 Identity = 71/129 (55.04%), Postives = 83/129 (64.34%), Query Frame = 0
BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A061E8K8|A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21 Identity = 69/120 (57.50%), Postives = 81/120 (67.50%), Query Frame = 0
BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|B9HTS5|B9HTS5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G047100v3 PE=4 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20 Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 0
BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A067JRV9|A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20 Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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