CsGy5G021660 (gene) Cucumber (Gy14) v2

NameCsGy5G021660
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprobable E3 ubiquitin-protein ligase XERICO
LocationChr5 : 27342817 .. 27343595 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTGTAAGCATTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACTTTACTTGTCCTCTTTGTCGCTCTATCGAATAATGTTTTTAACAATTTTAGGGGTTTTTTTTAAAAAAATTTCTTTCTCTATCTCTCTTCCTATTTCATTTTGAGTGAAAGAGGATGAAGTTTTGAAACTGCTAAGTGATATATAATTAAATTCACTATACCTACCCATTGTAGTTTAAGTTTTTGGGTACTGGTGATTTATGTTCAAGTCGTGTAATATCATTTCCTCTTTGAACAAAAAAATTGTTCGTATCTCAAGCTATGAAAAAGTGATTTAAGAGCAATACCAACACTTTGTTACTTTGTATTTGTAGTATTAAAATAGGTGGGGGATAGTGGAAGTGTTTCTTTTTCTTTTTTCAGATAAATCATTTACTGTTTTATTAAACTCCTAG

mRNA sequence

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG

Coding sequence (CDS)

ATGGGTCTCTCAAATTTTCCTCCTTCAGCTGAAGGGGTGTTGCTGTTGCCAGTTTTAGTGATGAACACTGTAATGTCAATGGCGTTTTTGAAGAATTTTGTGAGATCTGTTATACAAATGATGAGTGCCAGTGGGAATTCTTCGAGTTCTGAGGAAGAATACGATTGGGAAAATAGAAGAGAAAGAAGGATTTCAATTACTCAGTTCAAAACTTTGGGGCAAAGCTTCAATGGGGAAACAGAGGAGGAGTTTGTTTCGAGGTGTGTTATGGCAGAGTGTTGTGTTTGTCTTTGTAGGTTTGAAGCTGATGAAGAAGTTAGTGAGTTGTCTTATAAATCATTTACTGTTTTATTAAACTCCTAG

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSFTVLLNS
BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_011655602.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN51747.1 hypothetical protein Csa_5G598060 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.8e-51
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 95/115 (82.61%), Postives = 99/115 (86.09%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN      E+DWEN R
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           ERRISITQFK+LGQSF NG TE+   SRC+MAECCVCLC FEADEEVSELS K F
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHF 157

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022957080.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42
Identity = 96/115 (83.48%), Postives = 98/115 (85.22%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN      E DWEN R
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           ERRISITQFK+LGQSF NG TE+   SRCVMAECCVCLC FEADEEVSELS K F
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHF 189

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42
Identity = 95/115 (82.61%), Postives = 98/115 (85.22%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN      E+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  ERRISITQFKTLGQSF-NGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           ERRISITQFK+LGQSF NG TE+   SRC MAECCVCLC FEADEEVSELS K F
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHF 115

BLAST of CsGy5G021660 vs. NCBI nr
Match: XP_022151826.1 (probable E3 ubiquitin-protein ligase XERICO [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 4.6e-30
Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSV--IQMMSASGNSXXXXXEYDWEN 60
           MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+ VRSV            XXXXX    EN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVXXXXXXXXXXXXXXXXXXXXXEN 60

Query: 61  RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
            RERRISITQFK+L QSFNG TE+   SRC+ AECCVCLC FEADEEVSELS K F
Sbjct: 61  ARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHF 116

BLAST of CsGy5G021660 vs. TAIR10
Match: AT1G67856.1 (RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-14
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQ--MMSASGNSXXXXXEYDWEN 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN VRSV+           XXXXX      
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSEL 110
           +R RRISIT F++L ++     E E +      +CCVCLC F+ +EEVSEL
Sbjct: 61  KRRRRISITHFESLCENRGSRNEREAM------DCCVCLCGFKEEEEVSEL 103

BLAST of CsGy5G021660 vs. TAIR10
Match: AT1G24580.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 21  MNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRRERRISITQFKTLGQSFNGET 80
           MNTV+S+  LKN VRSV Q++++   S     +   ++   RRISITQFK+L ++   E 
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  EEEFVSRCVMAECCVCLCRFEADEEVSEL 110
           EE+ V      ECCVCLC F+ +EEVSEL
Sbjct: 61  EEKGV------ECCVCLCGFKEEEEVSEL 83

BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXEYDWENRR 60

Query: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELS K F
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHF 114

BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A2P4H301|A0A2P4H301_QUESU (Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_00091 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 71/129 (55.04%), Postives = 83/129 (64.34%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASG---NSXXXXXEYDW- 60
           MGLSNFP  AEGV  LPVLVMNTV+S+AF+KN VRS++Q+M A+    N      E D  
Sbjct: 48  MGLSNFPSPAEGV--LPVLVMNTVLSVAFMKNMVRSLLQVMGATASDQNPSNLEEEQDGC 107

Query: 61  -ENRRERRISITQFKTLGQS----------FNGETEEEFVSRCVMAECCVCLCRFEADEE 115
            +N RERRISITQFK+L Q+            G T     S   + ECCVCLCRFEA+EE
Sbjct: 108 VQNARERRISITQFKSLCQNRSIKLGSTSKIRGGTCTTSSSNGCIMECCVCLCRFEAEEE 167

BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A061E8K8|A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 69/120 (57.50%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSXXXXXE----YDW 60
           MGLSNFP +AEGV  LPVLVMNTV+S+A LKN VRS++Q++ ASG+S     +    Y  
Sbjct: 1   MGLSNFPSAAEGV--LPVLVMNTVLSVALLKNMVRSLLQVVGASGSSSSSLDDESDGYPE 60

Query: 61  EN--RRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           EN   RERRISITQFK+L  + +G             ECCVCLC FEADEEVSELS K F
Sbjct: 61  ENIKARERRISITQFKSLCHTSDGSGS----GWANTVECCVCLCGFEADEEVSELSCKHF 114

BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|B9HTS5|B9HTS5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G047100v3 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASG----NSXXXXXEYDW 60
           MGLS+FP +AEGV  LPVLVMNTV+S+A LK+ VRSV+Q++  +     +      EY  
Sbjct: 1   MGLSSFPGAAEGV--LPVLVMNTVLSVALLKSMVRSVLQLVVGANWTPPDYEEEPDEYRR 60

Query: 61  ENRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           EN RERRISITQFK+L Q+  G       +R    ECCVCLC FEA+EEVSELS K F
Sbjct: 61  ENARERRISITQFKSLNQNDGG-------ARNSAMECCVCLCGFEAEEEVSELSCKHF 109

BLAST of CsGy5G021660 vs. TrEMBL
Match: tr|A0A067JRV9|A0A067JRV9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSAS---GNSXXXXXEYDWE 60
           MGLS+FP +AEGV  LP+LVMNTV+S+A LKN VRS++Q++ A+    +      E+  E
Sbjct: 1   MGLSSFPSAAEGV--LPILVMNTVLSVALLKNMVRSLLQVVGANWIPQDYEQDPDEFPRE 60

Query: 61  NRRERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSYKSF 115
           N R R ISITQFK+L    NG       SR  + ECCVCLC FEA+EEVSELS K F
Sbjct: 61  NARMRTISITQFKSLTPHSNGGGSCSGGSRGAIVECCVCLCGFEAEEEVSELSCKHF 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011655602.12.8e-5198.25PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN517... [more]
XP_022984317.11.8e-4282.61probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima][more]
XP_022957080.14.0e-4283.48probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata][more]
XP_023523084.14.0e-4282.61probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023... [more]
XP_022151826.14.6e-3071.55probable E3 ubiquitin-protein ligase XERICO [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G67856.13.3e-1445.05RING/U-box superfamily protein[more]
AT1G24580.11.3e-1347.19RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KTI8|A0A0A0KTI8_CUCSA1.8e-5198.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1[more]
tr|A0A2P4H301|A0A2P4H301_QUESU1.2e-2155.04Putative e3 ubiquitin-protein ligase xerico OS=Quercus suber OX=58331 GN=CFP56_0... [more]
tr|A0A061E8K8|A0A061E8K8_THECC2.6e-2157.50RING/U-box superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_010559 PE=4 SV=... [more]
tr|B9HTS5|B9HTS5_POPTR1.3e-2055.93Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G047100v3 PE=... [more]
tr|A0A067JRV9|A0A067JRV9_JATCU1.7e-2054.70Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17849 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G021660.1CsGy5G021660.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 28..113
NoneNo IPR availablePANTHERPTHR14155:SF190RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 28..113

The following gene(s) are paralogous to this gene:

None